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Volumn 13, Issue 7, 2012, Pages

Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation

Author keywords

[No Author keywords available]

Indexed keywords

CELL SURFACE PROTEIN; FRUCTOSE BISPHOSPHATE ALDOLASE; IRON; MITOCHONDRIAL PROTEIN;

EID: 84864139509     PISSN: None     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2012-13-7-r66     Document Type: Article
Times cited : (202)

References (63)
  • 1
    • 66149107356 scopus 로고    scopus 로고
    • The life of diatoms in the world's oceans.
    • 10.1038/nature08057, 19444204
    • Armbrust EV. The life of diatoms in the world's oceans. Nature 2009, 459:185-192. 10.1038/nature08057, 19444204.
    • (2009) Nature , vol.459 , pp. 185-192
    • Armbrust, E.V.1
  • 6
    • 77957294748 scopus 로고    scopus 로고
    • Oceanographic and biogeochemical insights from diatom genomes.
    • Bowler C, Vardi A, Allen AE. Oceanographic and biogeochemical insights from diatom genomes. Annu Rev Marine Sci 2010, 2:333-365.
    • (2010) Annu Rev Marine Sci , vol.2 , pp. 333-365
    • Bowler, C.1    Vardi, A.2    Allen, A.E.3
  • 7
    • 0037388327 scopus 로고    scopus 로고
    • The mesozoic radiation of eukaryotic algae: The portable plastid hypothesis.
    • Grzebyk D, Schofield O, Vetriani C, Falkowski PG. The mesozoic radiation of eukaryotic algae: The portable plastid hypothesis. J Phycol 2003, 39:259-267.
    • (2003) J Phycol , vol.39 , pp. 259-267
    • Grzebyk, D.1    Schofield, O.2    Vetriani, C.3    Falkowski, P.G.4
  • 9
    • 0001638456 scopus 로고
    • The role of iron in phytoplankton photosynthesis, and the potential for iron limitation of primary productivity in the sea
    • Geider RJ, Julie LaRoche J. The role of iron in phytoplankton photosynthesis, and the potential for iron limitation of primary productivity in the sea. Photosynth Res 1994, 39:275-301.
    • (1994) Photosynth Res , vol.39 , pp. 275-301
    • Geider, R.J.1    Julie LaRoche, J.2
  • 10
    • 0029756642 scopus 로고    scopus 로고
    • Flavodoxin as an in situ marker for iron stress in phytoplankton.
    • LaRoche J, Boyd PW, McKay RML, Geider RJ. Flavodoxin as an in situ marker for iron stress in phytoplankton. Nature 1996, 382:802-805.
    • (1996) Nature , vol.382 , pp. 802-805
    • LaRoche, J.1    Boyd, P.W.2    McKay, R.M.L.3    Geider, R.J.4
  • 11
    • 33744966833 scopus 로고    scopus 로고
    • Copper-containing plastocyanin used for electron transport by an oceanic diatom.
    • 10.1038/nature04630, 16572122
    • Peers G, Price NM. Copper-containing plastocyanin used for electron transport by an oceanic diatom. Nature 2006, 441:341-344. 10.1038/nature04630, 16572122.
    • (2006) Nature , vol.441 , pp. 341-344
    • Peers, G.1    Price, N.M.2
  • 12
    • 6044271639 scopus 로고    scopus 로고
    • Photosynthetic architecture differs in coastal and oceanic diatoms.
    • 10.1038/nature02954, 15470428
    • Strzepek RF, Harrison PJ. Photosynthetic architecture differs in coastal and oceanic diatoms. Nature 2004, 431:689-692. 10.1038/nature02954, 15470428.
    • (2004) Nature , vol.431 , pp. 689-692
    • Strzepek, R.F.1    Harrison, P.J.2
  • 13
    • 0020922957 scopus 로고
    • Limitation of marine phytoplankton reproductive rates by zinc, manganese, and iron.
    • Brand LE, Sunda WG, Guillard RRL. Limitation of marine phytoplankton reproductive rates by zinc, manganese, and iron. Limnol Oceanogr 1983, 28:1182-1198.
    • (1983) Limnol Oceanogr , vol.28 , pp. 1182-1198
    • Brand, L.E.1    Sunda, W.G.2    Guillard, R.R.L.3
  • 14
    • 53649100100 scopus 로고    scopus 로고
    • The development and impact of 454 sequencing.
    • 10.1038/nbt1485, 18846085
    • Rothberg JM, Leamon JH. The development and impact of 454 sequencing. Nat Biotechnol 2008, 26:1117-1124. 10.1038/nbt1485, 18846085.
    • (2008) Nat Biotechnol , vol.26 , pp. 1117-1124
    • Rothberg, J.M.1    Leamon, J.H.2
  • 15
    • 42249101576 scopus 로고    scopus 로고
    • Inter- and intraspecific relationships between nuclear DNA content and cell size in selected members of the centric diatom genus Thalassiosira (Bacillariophyceae).
    • von Dassow P, Petersen TW, Chepurnov VA, Armbrust EV. Inter- and intraspecific relationships between nuclear DNA content and cell size in selected members of the centric diatom genus Thalassiosira (Bacillariophyceae). J Phycol 2008, 44:335-349.
    • (2008) J Phycol , vol.44 , pp. 335-349
    • von Dassow, P.1    Petersen, T.W.2    Chepurnov, V.A.3    Armbrust, E.V.4
  • 16
    • 33748674197 scopus 로고    scopus 로고
    • AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.
    • 10.1186/gb-2006-7-s1-s11, 1810548, 16925833
    • Stanke M, Tzvetkova A, Morgenstern B. AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome. Genome Biol 2006, 7(Suppl 1):S11. 10.1186/gb-2006-7-s1-s11, 1810548, 16925833.
    • (2006) Genome Biol , vol.7 , Issue.SUPPL. 1
    • Stanke, M.1    Tzvetkova, A.2    Morgenstern, B.3
  • 17
    • 78650298751 scopus 로고    scopus 로고
    • Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation.
    • 10.1186/1471-2164-11-718, 3022921, 21171997
    • Lommer M, Roy AS, Schilhabel M, Schreiber S, Rosenstiel P, LaRoche J. Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation. BMC Genomics 2010, 11:718. 10.1186/1471-2164-11-718, 3022921, 21171997.
    • (2010) BMC Genomics , vol.11 , pp. 718
    • Lommer, M.1    Roy, A.S.2    Schilhabel, M.3    Schreiber, S.4    Rosenstiel, P.5    LaRoche, J.6
  • 18
    • 84867014829 scopus 로고    scopus 로고
    • The Thalassiosira oceanica Genome Browser.
    • The Thalassiosira oceanica Genome Browser. , http://bose.ifm-geomar.de/cgi-bin/gbrowse/Toceanica/
  • 19
    • 84867014831 scopus 로고    scopus 로고
    • Fragilariopsis cylindrus - JGI Genome Browser.
    • Fragilariopsis cylindrus - JGI Genome Browser. , http://genome.jgi-psf.org/Fracy1/Fracy1.download.html
  • 21
    • 0002063504 scopus 로고
    • Iron nutrition of phytoplankton and its possible importance in the ecology of ocean regions with high nutrient and low biomass.
    • Morel FMM, Rueter JG, Price NM. Iron nutrition of phytoplankton and its possible importance in the ecology of ocean regions with high nutrient and low biomass. Oceanography 1991, 4:56-61.
    • (1991) Oceanography , vol.4 , pp. 56-61
    • Morel, F.M.M.1    Rueter, J.G.2    Price, N.M.3
  • 22
    • 0034518635 scopus 로고    scopus 로고
    • The comparison of gene expression from multiple cDNA libraries.
    • 10.1101/gr.GR-1325RR, 313085, 11116099
    • Stekel DJ, Git Y, Falciani F. The comparison of gene expression from multiple cDNA libraries. Genome Res 2000, 10:2055-2061. 10.1101/gr.GR-1325RR, 313085, 11116099.
    • (2000) Genome Res , vol.10 , pp. 2055-2061
    • Stekel, D.J.1    Git, Y.2    Falciani, F.3
  • 23
    • 3242715114 scopus 로고    scopus 로고
    • Reactive oxygen species: metabolism, oxidative stress, and signal transduction.
    • 10.1146/annurev.arplant.55.031903.141701, 15377225
    • Apel K, Hirt H. Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 2004, 55:373-399. 10.1146/annurev.arplant.55.031903.141701, 15377225.
    • (2004) Annu Rev Plant Biol , vol.55 , pp. 373-399
    • Apel, K.1    Hirt, H.2
  • 24
    • 78149232898 scopus 로고    scopus 로고
    • An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light.
    • 10.1073/pnas.1007703107, 2964204, 20921421
    • Bailleul B, Rogato A, de Martino A, Coesel S, Cardol P, Bowler C, Falciatore A, Finazzi G. An atypical member of the light-harvesting complex stress-related protein family modulates diatom responses to light. Proc Natl Acad Sci USA 2010, 107:18214-18219. 10.1073/pnas.1007703107, 2964204, 20921421.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 18214-18219
    • Bailleul, B.1    Rogato, A.2    de Martino, A.3    Coesel, S.4    Cardol, P.5    Bowler, C.6    Falciatore, A.7    Finazzi, G.8
  • 25
    • 70849095710 scopus 로고    scopus 로고
    • An ancient light-harvesting protein is critical for the regulation of algal photosynthesis.
    • 10.1038/nature08587, 19940928
    • Peers G, Truong TB, Ostendorf E, Busch A, Elrad D, Grossman AR, Hippler M, Niyogi KK. An ancient light-harvesting protein is critical for the regulation of algal photosynthesis. Nature 2009, 462:518-521. 10.1038/nature08587, 19940928.
    • (2009) Nature , vol.462 , pp. 518-521
    • Peers, G.1    Truong, T.B.2    Ostendorf, E.3    Busch, A.4    Elrad, D.5    Grossman, A.R.6    Hippler, M.7    Niyogi, K.K.8
  • 26
    • 0002063504 scopus 로고
    • Iron nutrition of phytoplankton and its possible importance in the ecology of ocean regions with high nutrient and low biomass.
    • Morel FMM, Rueter JG, Price NM. Iron nutrition of phytoplankton and its possible importance in the ecology of ocean regions with high nutrient and low biomass. Oceanography 1991, 4:56-61.
    • (1991) Oceanography , vol.4 , pp. 56-61
    • Morel, F.M.M.1    Rueter, J.G.2    Price, N.M.3
  • 27
    • 84862894116 scopus 로고    scopus 로고
    • Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms.
    • 3245544, 21903677
    • Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Mol Biol Evol 2011, 29:367-379. 3245544, 21903677.
    • (2011) Mol Biol Evol , vol.29 , pp. 367-379
    • Allen, A.E.1    Moustafa, A.2    Montsant, A.3    Eckert, A.4    Kroth, P.G.5    Bowler, C.6
  • 28
    • 0033802606 scopus 로고    scopus 로고
    • Purification and characterization of glpX-encoded fructose 1,6-bisphosphatase, a new enzyme of the glycerol 3-phosphate regulon of Escherichia coli.
    • 10.1128/JB.182.19.5624-5627.2000, 111013, 10986273
    • Donahue JL, Bownas JL, Niehaus WG, Larson TJ. Purification and characterization of glpX-encoded fructose 1,6-bisphosphatase, a new enzyme of the glycerol 3-phosphate regulon of Escherichia coli. J Bacteriol 2000, 182:5624-5627. 10.1128/JB.182.19.5624-5627.2000, 111013, 10986273.
    • (2000) J Bacteriol , vol.182 , pp. 5624-5627
    • Donahue, J.L.1    Bownas, J.L.2    Niehaus, W.G.3    Larson, T.J.4
  • 29
    • 0029761259 scopus 로고    scopus 로고
    • Novel active site in Escherichia coli fructose 1,6-bisphosphate aldolase.
    • 10.1038/nsb1096-856, 8836102
    • Blom NS, Tetreault S, Coulombe R, Sygusch J. Novel active site in Escherichia coli fructose 1,6-bisphosphate aldolase. Nat Struct Biol 1996, 3:856-862. 10.1038/nsb1096-856, 8836102.
    • (1996) Nat Struct Biol , vol.3 , pp. 856-862
    • Blom, N.S.1    Tetreault, S.2    Coulombe, R.3    Sygusch, J.4
  • 30
    • 0037348358 scopus 로고    scopus 로고
    • The organization of divalent cations in the active site of cadmium Escherichia coli fructose-1,6-bisphosphate aldolase.
    • Hall DR, Kemp LE, Leonard GA, Marshall K, Berry A, Hunter WN. The organization of divalent cations in the active site of cadmium Escherichia coli fructose-1,6-bisphosphate aldolase. Acta Crystallogr D 2003, 59:611-614.
    • (2003) Acta Crystallogr D , vol.59 , pp. 611-614
    • Hall, D.R.1    Kemp, L.E.2    Leonard, G.A.3    Marshall, K.4    Berry, A.5    Hunter, W.N.6
  • 31
    • 0037453033 scopus 로고    scopus 로고
    • Polyketide and non-ribosomal peptide synthases: Falling together by coming apart.
    • 10.1073/pnas.0730689100, 152231, 12631695
    • Hutchinson CR. Polyketide and non-ribosomal peptide synthases: Falling together by coming apart. Proc Natl Acad Sci USA 2003, 100:3010-3012. 10.1073/pnas.0730689100, 152231, 12631695.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 3010-3012
    • Hutchinson, C.R.1
  • 32
    • 0027498549 scopus 로고
    • Trace metal transport by marine microorganisms: Implications of metal coordination kinetics.
    • Hudson RJM, Morel FMM. Trace metal transport by marine microorganisms: Implications of metal coordination kinetics. Deep Sea Res Part I Oceanogr Res Pap 1992, 40:129-150.
    • (1992) Deep Sea Res Part I Oceanogr Res Pap , vol.40 , pp. 129-150
    • Hudson, R.J.M.1    Morel, F.M.M.2
  • 33
    • 55249096894 scopus 로고    scopus 로고
    • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast.
    • 10.1038/nature07341, 18820680
    • de Godoy LMF, Olsen JV, Cox J, Nielsen ML, Hubner NC, Froehlich F, Walther TC, Mann M. Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 2008, 455:1251-1254. 10.1038/nature07341, 18820680.
    • (2008) Nature , vol.455 , pp. 1251-1254
    • de Godoy, L.M.F.1    Olsen, J.V.2    Cox, J.3    Nielsen, M.L.4    Hubner, N.C.5    Froehlich, F.6    Walther, T.C.7    Mann, M.8
  • 34
    • 0027142977 scopus 로고
    • PsaL subunit is required for the formation of photosystem I trimers in the cyanobacterium Synechocystis sp. PCC 6803.
    • 10.1016/0014-5793(93)80831-E, 8262256
    • Chitnis VP, Chitnis PR. PsaL subunit is required for the formation of photosystem I trimers in the cyanobacterium Synechocystis sp. PCC 6803. FEBS Lett 1993, 336:330-334. 10.1016/0014-5793(93)80831-E, 8262256.
    • (1993) FEBS Lett , vol.336 , pp. 330-334
    • Chitnis, V.P.1    Chitnis, P.R.2
  • 35
    • 84864944295 scopus 로고    scopus 로고
    • Characterization of putative iron responsive genes as species-specific indicators of iron stress in thalassiosiroid diatoms.
    • 3223615, 22275908
    • Whitney LP, Lins JJ, Hughes MP, Wells ML, Chappell PD, Jenkins BD. Characterization of putative iron responsive genes as species-specific indicators of iron stress in thalassiosiroid diatoms. Front Microbiol 2011, 2:234. 3223615, 22275908.
    • (2011) Front Microbiol , vol.2 , pp. 234
    • Whitney, L.P.1    Lins, J.J.2    Hughes, M.P.3    Wells, M.L.4    Chappell, P.D.5    Jenkins, B.D.6
  • 36
    • 22244478077 scopus 로고    scopus 로고
    • Structure and physiologic function of the low-density lipoprotein receptor.
    • 10.1146/annurev.biochem.74.082803.133354, 15952897
    • Jeon H, Blacklow SC. Structure and physiologic function of the low-density lipoprotein receptor. Annu Rev Biochem 2005, 74:535-562. 10.1146/annurev.biochem.74.082803.133354, 15952897.
    • (2005) Annu Rev Biochem , vol.74 , pp. 535-562
    • Jeon, H.1    Blacklow, S.C.2
  • 37
    • 34247884339 scopus 로고    scopus 로고
    • Multicopper ferroxidase involved in iron binding to transferrins in Dunaliella salina plasma membranes.
    • 10.1074/jbc.M609756200, 17227764
    • Paz Y, Katz A, Pick U. Multicopper ferroxidase involved in iron binding to transferrins in Dunaliella salina plasma membranes. J Biol Chem 2007, 282:8658-8666. 10.1074/jbc.M609756200, 17227764.
    • (2007) J Biol Chem , vol.282 , pp. 8658-8666
    • Paz, Y.1    Katz, A.2    Pick, U.3
  • 38
    • 0034117358 scopus 로고    scopus 로고
    • Dotlet: diagonal plots in a web browser.
    • 10.1093/bioinformatics/16.2.178, 10842741
    • Junier T, Pagni M. Dotlet: diagonal plots in a web browser. Bioinformatics 2000, 16:178-179. 10.1093/bioinformatics/16.2.178, 10842741.
    • (2000) Bioinformatics , vol.16 , pp. 178-179
    • Junier, T.1    Pagni, M.2
  • 39
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Menlo Park, California: AAAI Press, Altman R, Brutlag D, Karp P, Lathrop R, Searls D
    • Bailey TL, Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology 1994, 28-36. Menlo Park, California: AAAI Press, Altman R, Brutlag D, Karp P, Lathrop R, Searls D.
    • (1994) Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 41
    • 72849160376 scopus 로고
    • Auxotrophy and heterotrophy in marine littoral diatoms.
    • 10.1139/m60-015, 14416473
    • Lewin JC, Lewin RA. Auxotrophy and heterotrophy in marine littoral diatoms. Can J Microbiol 1960, 6:127-134. 10.1139/m60-015, 14416473.
    • (1960) Can J Microbiol , vol.6 , pp. 127-134
    • Lewin, J.C.1    Lewin, R.A.2
  • 43
    • 0035874988 scopus 로고    scopus 로고
    • Trophic obligate conversion of an photoautotrophic organism through metabolic engineering.
    • 10.1126/science.160015, 11408656
    • Zaslavskaia LA, Lippmeier JC, Shih C, Ehrhardt D, Grossman AR, Apt KE. Trophic obligate conversion of an photoautotrophic organism through metabolic engineering. Science 2001, 292:2073-2075. 10.1126/science.160015, 11408656.
    • (2001) Science , vol.292 , pp. 2073-2075
    • Zaslavskaia, L.A.1    Lippmeier, J.C.2    Shih, C.3    Ehrhardt, D.4    Grossman, A.R.5    Apt, K.E.6
  • 45
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes.
    • 10.1016/S0168-9525(98)01494-2, 9724962
    • Doolittle WE. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet 1998, 14:307-311. 10.1016/S0168-9525(98)01494-2, 9724962.
    • (1998) Trends Genet , vol.14 , pp. 307-311
    • Doolittle, W.E.1
  • 47
    • 20044394916 scopus 로고    scopus 로고
    • A general kinetic model for iron acquisition by eukaryotic phytoplankton.
    • Shaked Y, Kustka AB, Morel FMM. A general kinetic model for iron acquisition by eukaryotic phytoplankton. Limnol Oceanogr 2005, 50:872-882.
    • (2005) Limnol Oceanogr , vol.50 , pp. 872-882
    • Shaked, Y.1    Kustka, A.B.2    Morel, F.M.M.3
  • 48
    • 84985217503 scopus 로고
    • The marine, planktonic diatoms Thalassiosira oceanica Sp-Nov and Thalassiosira partheneia.
    • Hasle GR. The marine, planktonic diatoms Thalassiosira oceanica Sp-Nov and Thalassiosira partheneia. J Phycol 1983, 19:220-229.
    • (1983) J Phycol , vol.19 , pp. 220-229
    • Hasle, G.R.1
  • 49
    • 84986437255 scopus 로고
    • The Center for Culture of Marine Phytoplankton: history, structure, function and future.
    • Guillard RRL. The Center for Culture of Marine Phytoplankton: history, structure, function and future. J Protozool 1988, 35:255-256.
    • (1988) J Protozool , vol.35 , pp. 255-256
    • Guillard, R.R.L.1
  • 50
    • 84986745455 scopus 로고
    • Steady-state growth and ammonium uptake of a fast-growing marine diatom.
    • Goldman JC, McCarthy JJ. Steady-state growth and ammonium uptake of a fast-growing marine diatom. Limnol Oceanogr 1978, 23:695-703.
    • (1978) Limnol Oceanogr , vol.23 , pp. 695-703
    • Goldman, J.C.1    McCarthy, J.J.2
  • 51
    • 0000777265 scopus 로고    scopus 로고
    • Chlorophyll fluorescence: new instruments for special applications
    • Dordrecht: Kluwer Academic Publishers, Garab G
    • Schreiber U. Chlorophyll fluorescence: new instruments for special applications. Photosynthesis: Mechanisms and Effects. Volume V 1998, 4253-4258. Dordrecht: Kluwer Academic Publishers, Garab G.
    • (1998) Photosynthesis: Mechanisms and Effects. Volume V , pp. 4253-4258
    • Schreiber, U.1
  • 52
    • 34347263073 scopus 로고    scopus 로고
    • Purification of mitochondrial and plastid DNA.
    • 10.1038/nprot.2007.58, 17406627
    • Lang BF, Burger G. Purification of mitochondrial and plastid DNA. Nat Protoc 2007, 2:652-660. 10.1038/nprot.2007.58, 17406627.
    • (2007) Nat Protoc , vol.2 , pp. 652-660
    • Lang, B.F.1    Burger, G.2
  • 54
    • 84859048706 scopus 로고    scopus 로고
    • The Transcriptome Analysis and Comparison Explorer - T-ACE: a platform-independent, graphical tool to process large RNAseq datasets of non-model organisms.
    • 10.1093/bioinformatics/bts056, 22285826
    • Philipp EE, Kraemer L, Mountfort D, Schilhabel M, Schreiber S, Rosenstiel P. The Transcriptome Analysis and Comparison Explorer - T-ACE: a platform-independent, graphical tool to process large RNAseq datasets of non-model organisms. Bioinformatics 2012, 28:777-783. 10.1093/bioinformatics/bts056, 22285826.
    • (2012) Bioinformatics , vol.28 , pp. 777-783
    • Philipp, E.E.1    Kraemer, L.2    Mountfort, D.3    Schilhabel, M.4    Schreiber, S.5    Rosenstiel, P.6
  • 55
    • 79954562400 scopus 로고    scopus 로고
    • Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows.
    • 10.1093/bioinformatics/btr081, 21325302
    • Specht M, Kuhlgert S, Fufezan C, Hippler M. Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows. Bioinformatics 2011, 27:1183-1184. 10.1093/bioinformatics/btr081, 21325302.
    • (2011) Bioinformatics , vol.27 , pp. 1183-1184
    • Specht, M.1    Kuhlgert, S.2    Fufezan, C.3    Hippler, M.4
  • 57
    • 79955015992 scopus 로고    scopus 로고
    • Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome.
    • 10.1002/pmic.201000621, 3145493, 21432999
    • Specht M, Stanke M, Terashima M, Naumann-Busch B, Janssen I, Hohner R, Hom EF, Liang C, Hippler M. Concerted action of the new Genomic Peptide Finder and AUGUSTUS allows for automated proteogenomic annotation of the Chlamydomonas reinhardtii genome. Proteomics 2011, 11:1814-1823. 10.1002/pmic.201000621, 3145493, 21432999.
    • (2011) Proteomics , vol.11 , pp. 1814-1823
    • Specht, M.1    Stanke, M.2    Terashima, M.3    Naumann-Busch, B.4    Janssen, I.5    Hohner, R.6    Hom, E.F.7    Liang, C.8    Hippler, M.9
  • 58
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry.
    • 10.1038/nmeth1019, 17327847
    • Elias JE, Gygi SP. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat Methods 2007, 4:207-214. 10.1038/nmeth1019, 17327847.
    • (2007) Nat Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 59
    • 77952825427 scopus 로고    scopus 로고
    • Characterizing the anaerobic response of Chlamydomonas reinhardtii by quantitative proteomics.
    • 10.1074/mcp.M900421-MCP200, 2938099, 20190198
    • Terashima M, Specht M, Naumann B, Hippler M. Characterizing the anaerobic response of Chlamydomonas reinhardtii by quantitative proteomics. Mol Cell Proteomics 2010, 9:1514-1532. 10.1074/mcp.M900421-MCP200, 2938099, 20190198.
    • (2010) Mol Cell Proteomics , vol.9 , pp. 1514-1532
    • Terashima, M.1    Specht, M.2    Naumann, B.3    Hippler, M.4
  • 60
    • 84872617175 scopus 로고    scopus 로고
    • NCBI Sequence Read Archive.
    • NCBI Sequence Read Archive. , http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi
  • 61
    • 84867014830 scopus 로고    scopus 로고
    • NCBI Transcriptome Shotgun Assembly database.
    • NCBI Transcriptome Shotgun Assembly database. , http://www.ncbi.nlm.nih.gov/genbank/TSA.html
  • 62
    • 84867014832 scopus 로고    scopus 로고
    • The Proteome Commons Tranche repository for proteomics data.
    • The Proteome Commons Tranche repository for proteomics data. , https://proteomecommons.org/tranche/
  • 63
    • 84867013202 scopus 로고    scopus 로고
    • The Joint Genome Institute of the US Department of Energy.
    • The Joint Genome Institute of the US Department of Energy. , http://www.jgi.doe.gov/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.