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Volumn 473, Issue 7346, 2011, Pages 203-207

Evolution and metabolic significance of the urea cycle in photosynthetic diatoms

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CARBAMOYL PHOSPHATE SYNTHASE; CARBON; GENE PRODUCT; GLUTAMATE AMMONIA LIGASE; GLUTAMATE SYNTHASE; NITROGEN; ORNITHINE; POLYAMINE; PROLINE; RNA; SILICON DIOXIDE; TRICARBOXYLIC ACID; UREA;

EID: 79955910093     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature10074     Document Type: Article
Times cited : (391)

References (49)
  • 1
    • 3142664643 scopus 로고    scopus 로고
    • Theevolution of modern eukaryotic phytoplankton
    • Falkowski, P. G. et al. Theevolution of modern eukaryotic phytoplankton. Science 305, 354-360 (2004).
    • (2004) Science , vol.305 , pp. 354-360
    • Falkowski, P.G.1
  • 2
    • 34548729735 scopus 로고    scopus 로고
    • Mixand match: Howclimateselects phytoplankton Nature Rev
    • Falkowski, P. G. & Oliver, M. J. Mixand match: howclimateselects phytoplankton Nature Rev. Microbiol. 5, 813-819 (2007).
    • (2007) Microbiol. , vol.5 , pp. 813-819
    • Falkowski, P.G.1    Oliver, M.J.2
  • 3
    • 0029540174 scopus 로고
    • Production and dissolution of biogenic silica in the ocean: revised global estimates, comparison with regional data and relationship to biogenic sedimentation
    • Nelson, D. M., Treguer, P., Brzezinski, M. A., Leynaert, A. & Queguiner, B. Production and dissolution of biogenic silica in the ocean-revised global estimates, comparison with regional data and relationship to biogenic sedimentation. Glob. Biogeochem. Cycles 9, 359-372 (1995). (Pubitemid 26439874)
    • (1995) Global Biogeochemical Cycle , vol.9 , Issue.3 , pp. 359-372
    • Nelson, D.M.1    Treguer, P.2    Brzezinski, M.A.3    Leynaert, A.4    Queguiner, B.5
  • 6
    • 33646471390 scopus 로고    scopus 로고
    • An ecological and evolutionary context for ntegrated nitrogen metabolism and related signaling pathways in marine diatoms
    • Allen, A. E., Vardi, A. & Bowler, C. An ecological and evolutionary context for ntegrated nitrogen metabolism and related signaling pathways in marine diatoms. Curr. Opin. Plant Biol. 9, 264-273 (2006).
    • (2006) Curr. Opin. Plant Biol. , vol.9 , pp. 264-273
    • Allen, A.E.1    Vardi, A.2    Bowler, C.3
  • 7
    • 56249098614 scopus 로고    scopus 로고
    • The Phaeod actylumgenome reveal stheevolutionary history of diatom genomes
    • Bowler, C. et al. The Phaeod actylumgenome reveal stheevolutionary history of diatom genomes. Nature 456, 239-244 (2008).
    • (2008) Nature , vol.456 , pp. 239-244
    • Bowler, C.1
  • 8
    • 67649998350 scopus 로고    scopus 로고
    • Genomic foot prints of acryptic plastid endosymbiosis in diatoms
    • Moustafa, A. et al. Genomic foot prints of acryptic plastid endosymbiosis in diatoms. Science 324, 1724-1726 (2009).
    • (2009) Science , vol.324 , pp. 1724-1726
    • Moustafa, A.1
  • 9
    • 77957294748 scopus 로고    scopus 로고
    • Oceanographicand biogeochemical insightsfrom diatom genomes
    • Bowler, C., Vardi, A. & Allen, A. E. Oceanographicand biogeochemical insightsfrom diatom genomes. Ann. Rev. Mar. Sci. 2, 333-365 (2010).
    • (2010) Ann. Rev. Mar. Sci. , vol.2 , pp. 333-365
    • Bowler, C.1    Vardi, A.2    Allen, A.E.3
  • 10
    • 48749127648 scopus 로고    scopus 로고
    • Whole-cell response of the pennatediatom Phaeodactylum tricornutumto ironstarvation
    • Allen, A. E. et al. Whole-cell response of the pennatediatom Phaeodactylum tricornutumto ironstarvation. Proc. Natl Acad. Sci. USA 105, 10438-10443 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 10438-10443
    • Allen, A.E.1
  • 11
    • 58549108456 scopus 로고    scopus 로고
    • Diatoms\from cell wall biogenesisto nanotechnology
    • Kröger, N. & Poulsen, N. Diatoms\from cell wall biogenesisto nanotechnology. Annu. Rev. Genet 42, 83-107 (2008).
    • (2008) Annu. Rev. Genet , vol.42 , pp. 83-107
    • Kröger, N.1    Poulsen, N.2
  • 12
    • 34547574576 scopus 로고    scopus 로고
    • Regulation of proline metabolism under salt stress in the psychrophilic diatom Fragilariopsis cylindrus (Bacillariophyceae)
    • DOI 10.1111/j.1529-8817.2007.00366.x
    • Krell, A., Funck, D., Plettner, I., John, U. & Dieckmann, G. Regulation of proline metabolism under salt stress in the psychrophilic diatom Fragilariopsis cylindrus (Bacillariophyceae). J. Phycol. 43, 753-762 (2007). (Pubitemid 47196291)
    • (2007) Journal of Phycology , vol.43 , Issue.4 , pp. 753-762
    • Krell, A.1    Funck, D.2    Plettner, I.3    John, U.4    Dieckmann, G.5
  • 13
    • 0019327960 scopus 로고
    • Glutamine-and N-acetylglutamate-dependentcarbamoyl phosphate synthetase in elasmobranchs
    • Anderson, P. M. Glutamine-and N-acetylglutamate-dependentcarbamoyl phosphate synthetase in elasmobranchs. Science 208, 291-293 (1980).
    • (1980) Science , vol.208 , pp. 291-293
    • Anderson, P.M.1
  • 14
    • 0027996538 scopus 로고
    • Carbamyl phosphate synthetase III, an evolutionary intermediate in the transition between glutamine-dependent and ammonia-dependent carbamyl phosphate synthetases
    • DOI 10.1006/jmbi.1994.1638
    • Hong, J., Salo, W. L., Lusty, C. J. & Anderson, P. M. Carbamoyl-phosphate synthetase-III, an evolutionary intermediate in the transition between glutamine-dependent and ammonia-dependent carbamoyl-phosphate synthetases. J. Mol. Biol. 243, 131-140 (1994). (Pubitemid 24327239)
    • (1994) Journal of Molecular Biology , vol.243 , Issue.1 , pp. 131-140
    • Hong, J.1    Salo, W.L.2    Lusty, C.J.3    Anderson, P.M.4
  • 15
    • 0024494202 scopus 로고
    • Evolution of urea synthesis in vertebrates: The piscine connection
    • Mommsen, T. P. & Walsh, P. J. Evolution of urea synthesis in vertebrates: the piscine connection. Science 243, 72-75 (1989). (Pubitemid 19027926)
    • (1989) Science , vol.243 , Issue.4887 , pp. 72-75
    • Mommsen, T.P.1    Walsh, P.J.2
  • 16
    • 0029815789 scopus 로고    scopus 로고
    • Phylogenetic analysis of carbamoylphosphate synthetase genes: Complex evolutionary history includes an internal duplication within a gene which can root the tree of life
    • Lawson, F. S., Charlebois, R. L & Dillon, J. A. R. Phylogenetic analysis of carbamoylphosphatesynthetasegenes: Complexevolutionaryhistoryincludesan nternal duplication within a genewhich can rootthetreeof life. Mol. Biol. Evol. 13, 970-977 (1996). (Pubitemid 26284913)
    • (1996) Molecular Biology and Evolution , vol.13 , Issue.7 , pp. 970-977
    • Lawson, F.S.1    Charlebois, R.L.2    Dillon, J.-A.R.3
  • 17
    • 38249043372 scopus 로고
    • The hibernating bear: Why is itso hot, and whydoes itcycle urea through the gut
    • Guppy, M. The hibernating bear: why is itso hot, and whydoes itcycle urea through the gut. Trends Biochem. Sci. 11, 274-276 (1986).
    • (1986) Trends Biochem. Sci. , vol.11 , pp. 274-276
    • Guppy, M.1
  • 18
    • 0032729457 scopus 로고    scopus 로고
    • Carbamoyl phosphate synthetase: An amazing biochemical odyssey from substrate to product
    • DOI 10.1007/s000180050448
    • Holden, H. M., Thoden, J. B. & Raushel, F. M. Carbamoyl phosphatesynthetase:an amazing biochemical odyssey from substrate to product. Cell. Mol. Life Sci. 56, 507-522 (1999). (Pubitemid 29520838)
    • (1999) Cellular and Molecular Life Sciences , vol.56 , Issue.5-6 , pp. 507-522
    • Holden, H.M.1    Thoden, J.B.2    Raushel, F.M.3
  • 19
    • 6044252163 scopus 로고    scopus 로고
    • Thegenomeofthediatom Thalassiosirapseudonana: Ecology evolution, and metabolism
    • Armbrust, E. V. et al. Thegenomeofthediatom Thalassiosirapseudonana: Ecology evolution, and metabolism. Science 306, 79-86 (2004).
    • (2004) Science , vol.306 , pp. 79-86
    • Armbrust, E.V.1
  • 20
    • 62549146255 scopus 로고    scopus 로고
    • Diatom plastidsdepend on nucleotide importfromthecytosol
    • Ast, M. et al. Diatom plastidsdepend on nucleotide importfromthecytosol. Proc. Natl Acad. Sci. USA 106, 3621-3626 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 3621-3626
    • Ast, M.1
  • 21
    • 77955821696 scopus 로고    scopus 로고
    • Digital expression profilingof novel diatomtranscripts provides insight into their biological functions
    • Maheswari, U. et al. Digital expression profilingof novel diatomtranscripts provides insight into their biological functions. Genome Biol. 11, R85 (2010).
    • (2010) Genome Biol. , vol.11
    • Maheswari, U.1
  • 22
    • 77949673615 scopus 로고    scopus 로고
    • Vitamin Adeficiency increases protein catabolismand nduces urea cycle enzymes in rats
    • Esteban-Pretel, G. et al. Vitamin Adeficiency increases protein catabolismand nduces urea cycle enzymes in rats. J. Nutr. 140, 792-798 (2010).
    • (2010) J. Nutr. , vol.140 , pp. 792-798
    • Esteban-Pretel, G.1
  • 25
    • 0142126885 scopus 로고    scopus 로고
    • Photosynthetic function in Dunaliella tertiolecta (Chlorophyta) during a nitrogen starvation and recovery cycle
    • Young, E. B. & Beardall, J. Photosynthetic function in Dunaliella tertiolecta (Chlorophyta) duringa nitrogen starvation recoverycycle. J. Phycol. 39, 897-905 (2003). (Pubitemid 37274258)
    • (2003) Journal of Phycology , vol.39 , Issue.5 , pp. 897-905
    • Young, E.B.1    Beardall, J.2
  • 26
    • 0036402941 scopus 로고    scopus 로고
    • Regulation of enzymes of the urea cycleand arginine metabolism
    • Morris, S. M. Regulation of enzymes of the urea cycleand arginine metabolism. Annu. Rev. Nutr. 22, 87-105 (2002).
    • (2002) Annu. Rev. Nutr. , vol.22 , pp. 87-105
    • Morris, S.M.1
  • 27
    • 78649761413 scopus 로고    scopus 로고
    • Metabolicand signalingaspects underpinning the regulation of plantcarbon nitrogen interactions
    • Nunes-Nesi, A., Fernie, A. R. & Stitt, M. Metabolicand signalingaspects underpinning the regulation of plantcarbon nitrogen interactions. Mol. Plant3, 973-96 (2010).
    • (2010) Mol. Plant , vol.3 , pp. 973-96
    • Nunes-Nesi, A.1    Fernie, A.R.2    Stitt, M.3
  • 28
  • 29
    • 34248580879 scopus 로고    scopus 로고
    • Gas chromatography mass spectrometry-based metabolite profiling in plants
    • Lisec, J., Schauer, N., Kopka, J., Willmitzer, L & Fernie, A. R. Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 1, 387-396 (2006).
    • (2006) Nature Protocols , vol.1 , pp. 387-396
    • Lisec, J.1    Schauer, N.2    Kopka, J.3    Willmitzer, L.4    Fernie, A.R.5
  • 30
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • DOI 10.1093/bioinformatics/btl446
    • Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogeneticanalyses with thousands of taxa and models. Bioinformatics 22, 2688-2690 (2006). (Pubitemid 44642609)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 31
    • 34848926649 scopus 로고    scopus 로고
    • Moleculartoolboxforstudyingdiatom biology in Phaeodactylum tricornutum
    • Siaut, M. et al. Moleculartoolboxforstudyingdiatom biology in Phaeodactylum tricornutum. Gene 406, 23-35 (2007).
    • (2007) Gene , vol.406 , pp. 23-35
    • Siaut, M.1
  • 34
    • 79955909147 scopus 로고    scopus 로고
    • R Development Core Team ISBN3-900051-07-0 (RFoundation for Statistical Computing
    • R Development Core Team. R: A languageand environmentforstatistica computing. ISBN3-900051-07-0 (RFoundation for Statistical Computing, 2008).
    • (2008) R: A Languageand Environmentforstatistica Computing
  • 35
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh, K., Misawa, K., Kuma, K. & Miyata, T. MAFT: a novel method for rapid multiplesequencealignment basedon fast Fouriertransform. Nucleic Acids Res. 30, 3059-3066 (2002). (Pubitemid 34851225)
    • (2002) Nucleic Acids Research , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.-I.3    Miyata, T.4
  • 36
    • 74549125386 scopus 로고    scopus 로고
    • Sea View version 4: A multiplatform graphica user interface for sequence alignment and phylogenetic tree building
    • Gouy, M., Guindon, S. & Gascuel, O. Sea View version 4: a multiplatform graphica user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 27, 221-224 (2010).
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3
  • 37
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H. A., Strimmer, K., Vingron, M. & von Haeseler, A. TREE-PUZZLE: a maximum likeli hood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18, 502-504 (2002). (Pubitemid 34284960)
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 38
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. Asimple, fast, and accuratealgorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52, 696-704 (2003). (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 39
    • 2442691520 scopus 로고    scopus 로고
    • A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
    • DOI 10.1093/molbev/msh112
    • Lartillot, N. & Philippe, H. ABayesian mixturemodelforacross- siteheterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 21, 1095-1109 (2004). (Pubitemid 38658218)
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.6 , pp. 1095-1109
    • Lartillot, N.1    Philippe, H.2
  • 40
    • 53749090508 scopus 로고    scopus 로고
    • Empirical profile mixture models for phylogenetic reconstruction
    • Quang, L S., Gascuel, O. & Lartillot, N. Empirical profile mixture models for phylogenetic reconstruction. Bioinformatics24, 2317-2323 (2008).
    • (2008) Bioinformatics , vol.24 , pp. 2317-2323
    • Quang, L.S.1    Gascuel, O.2    Lartillot, N.3
  • 41
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likeli hood-ratiotest for branches: Afast accurate, and powerful alternative
    • Anisimova, M. & Gascuel, O. Approximate likeli hood-ratiotest for branches:Afast accurate, and powerful alternative. Syst Biol. 55, 539-552 (2006).
    • (2006) Syst Biol. , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 42
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogeny
    • Huelsenbeck, J. P. & Ronquist, F. MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17, 754-755 (2001).
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 43
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • DOI 10.1093/bioinformatics/btg180
    • Ronquist, F. & Huelsenbeck, J. P. MRBAYES3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574 (2003). (Pubitemid 37038874)
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 44
    • 69949126557 scopus 로고    scopus 로고
    • Phylo Bayes: A Bayesian software package forphylogenetic reconstruction and moleculardating
    • Lartillot, N., Lepgae, T. & Blanquart, S. Phylo Bayes3:a Bayesian software package forphylogenetic reconstruction and moleculardating. Bioinformatics25, 2286-2288 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2286-2288
    • Lartillot, N.1    Lepgae, T.2    Blanquart, S.3
  • 45
    • 0030773749 scopus 로고    scopus 로고
    • Anonparametricapproachtoestimatingdivergencetimes in the absence of rate consistency
    • Sanderson, M. J. Anonparametricapproachtoestimatingdivergencetimes in the absence of rate consistency. Mol. Biol. Evol. 19, 1218-1231 (1997).
    • (1997) Mol. Biol. Evol. , vol.19 , pp. 1218-1231
    • Sanderson, M.J.1
  • 46
    • 0036135468 scopus 로고    scopus 로고
    • Estimating absolute rates of molecular evolution and divergence times: A penalized likelihood approach
    • Sanderson, M. J. Estimating absolute rates of molecularevolution and divergence times: a penalized likelihood approach. Mol. Biol. Evol. 19, 101-109 (2002). (Pubitemid 34008052)
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.1 , pp. 101-109
    • Sanderson, M.J.1
  • 47
    • 0031741182 scopus 로고    scopus 로고
    • Estimatingtherateofevolutionoftherateof molecular evolution
    • Thorne, J. L, Kishino, H. & Painter, I. S. Estimatingtherateofevolutionoftherateof molecular evolution. Mol. Biol. Evol. 15, 1647-1657 (1998).
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1647-1657
    • Thorne, J.L.1    Kishino, H.2    Painter, I.S.3
  • 48
    • 33750618212 scopus 로고    scopus 로고
    • A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record
    • DOI 10.1098/rspb.2006.3537
    • Berney, C. & Pawlowski, J. A moleculartimescaleforeukaryoteevolution recalibrated with the continuous microfossil record. Proc. R. Soc. A/B 273, 1867-1872 (2006). (Pubitemid 46939922)
    • (2006) Proceedings of the Royal Society B: Biological Sciences , vol.273 , Issue.1596 , pp. 1867-1872
    • Berney, C.1    Pawlowski, J.2
  • 49
    • 33845883023 scopus 로고    scopus 로고
    • Paleontological evidence to date the tree of life
    • DOI 10.1093/molbev/msl150
    • Benton, M. J. & Donoghue, P. C. J. Paleontological evidence to date the tree of life. Mol. Biol. Evol. 24, 26-53 (2007). (Pubitemid 46026279)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.1 , pp. 26-53
    • Benton, M.J.1    Donoghue, P.C.J.2


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