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Volumn 28, Issue 6, 2012, Pages 777-783

The transcriptome analysis and comparison explorer-T-ACE: A platform-independent, graphical tool to process large RNAseq datasets of non-model organisms

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; COMPUTER LANGUAGE; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENETICS; MOLLUSC; POLYCHAETA; SEQUENCE ANALYSIS;

EID: 84859048706     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts056     Document Type: Article
Times cited : (10)

References (18)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: tool for the unification of biology
    • Ashburner, M. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 2
    • 33644800656 scopus 로고    scopus 로고
    • Biological profiling of gene groups utilizing Gene Ontology
    • Bluthgen, N. et al. (2005) Biological profiling of gene groups utilizing Gene Ontology. Genome Inform., 16, 106-115.
    • (2005) Genome Inform. , vol.16 , pp. 106-115
    • Bluthgen, N.1
  • 3
    • 3042615882 scopus 로고    scopus 로고
    • Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
    • Chevreux, B. et al. (2004) Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res., 14, 1147-1159.
    • (2004) Genome Res. , vol.14 , pp. 1147-1159
    • Chevreux, B.1
  • 4
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa, A. et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics, 21, 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1
  • 5
    • 77749237076 scopus 로고    scopus 로고
    • Pyrosequencing of Mytilus galloprovincialis cDNAs: tissuespecific expression patterns
    • Craft, J. A. et al. (2010) Pyrosequencing of Mytilus galloprovincialis cDNAs: tissuespecific expression patterns. PLoS One, 5, e8875.
    • (2010) PLoS One , vol.5
    • Craft, J.A.1
  • 6
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 7
    • 58149203231 scopus 로고    scopus 로고
    • InterPro: the integrative protein signature database
    • Hunter, S. et al. (2009) InterPro: the integrative protein signature database. Nucleic Acids Res., 37, D211-D215.
    • (2009) Nucleic Acids Res. , vol.37
    • Hunter, S.1
  • 8
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa, M. and Goto, S. (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 9
    • 25444458848 scopus 로고    scopus 로고
    • AutoFACT: An Automatic Functional Annotation and Classification Tool
    • Koski, L. et al. (2005) AutoFACT: An Automatic Functional Annotation and Classification Tool. BMC Bioinformatics, 6, 151.
    • (2005) BMC Bioinformatics , vol.6 , pp. 151
    • Koski, L.1
  • 10
    • 77957926979 scopus 로고    scopus 로고
    • Comparing de novo assemblers for 454 transcriptome data
    • Kumar, S. and Blaxter, M. (2010) Comparing de novo assemblers for 454 transcriptome data. BMC Genomics, 11, 571.
    • (2010) BMC Genomics , vol.11 , pp. 571
    • Kumar, S.1    Blaxter, M.2
  • 11
    • 80052960863 scopus 로고    scopus 로고
    • Next-generation transcriptome assembly
    • Martin, J. A. and Wang, Z. (2011) Next-generation transcriptome assembly. Nat. Rev. Genet., 12, 671-682.
    • (2011) Nat. Rev. Genet. , vol.12 , pp. 671-682
    • Martin, J.A.1    Wang, Z.2
  • 13
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer, F. et al. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9, 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1
  • 14
    • 3142716808 scopus 로고    scopus 로고
    • PartiGene-constructing partial genomes
    • Parkinson, J. et al. (2004) PartiGene-constructing partial genomes. Bioinformatics, 20, 1398-1404.
    • (2004) Bioinformatics , vol.20 , pp. 1398-1404
    • Parkinson, J.1
  • 15
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen, S. and Skaletsky, H. (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol., 132, 365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 16
    • 42449107363 scopus 로고    scopus 로고
    • annot8r: rapid assignment of GO, EC and KEGG annotations
    • Schmid, R. and Blaxter, M. L. (2008) annot8r: rapid assignment of GO, EC and KEGG annotations. BMC Bioinformatics, 2008, 9, 180.
    • (2008) BMC Bioinformatics , vol.2008 , pp. 180
    • Schmid, R.1    Blaxter, M.L.2
  • 17
    • 13244256972 scopus 로고    scopus 로고
    • prot4EST: Translating Expressed Sequence Tags from neglected genomes
    • Wasmuth, J. and Blaxter, M. (2004) prot4EST: Translating Expressed Sequence Tags from neglected genomes. BMC Bioinformatics, 5, 187.
    • (2004) BMC Bioinformatics , vol.5 , pp. 187
    • Wasmuth, J.1    Blaxter, M.2
  • 18
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D. and Birney, E. (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res., 18, 821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.