Characterization of a novel bipartite double-stranded RNA mycovirus conferring hypovirulence in the phytopathogenic fungus Botrytis porri

Journal of Virology

Volumn 86, Issue 12, 2012, Pages 6605-6619

  Wu, Mingde ^a   Jin, Fengyin ^a   Zhang, Jing ^a   Yang, Long ^a   Jiang, Daohong ^a   Li, Guoqing ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED RNA; RNA POLYMERASE; VIRUS PROTEIN; VIRUS RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; BOTRYTIS; BOTRYTIS PORRI; CLADISTICS; DNA SEQUENCE; GENE SEQUENCE; HOST PATHOGEN INTERACTION; MOLECULAR PHYLOGENY; MYCELIAL GROWTH; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; RNA ANALYSIS; RNA FINGERPRINTING; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIRION; VIRUS GENOME; VIRUS PURIFICATION; VIRUS VIRULENCE;

AMINO ACID SEQUENCE; BOTRYTIS; GARLIC; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; RNA VIRUSES; RNA, DOUBLE-STRANDED; RNA, VIRAL; VIRAL PROTEINS; VIRULENCE;

ALLIUM SATIVUM; BOTRYOTINIA PORRI; CHRYSOVIRIDAE; DSRNA VIRUSES; FUNGI; MYCOVIRUS; RNA VIRUSES; SYZYGIUM AROMATICUM; TOTIVIRIDAE;

EID: 84864015434     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.00292-12     Document Type: Article

References (59)

1. Anagnostakis SL. 1982. Biological control of chestnut blight. Science 215: 466-471.
2. Aoki N, et al. 2009. A novel mycovirus associated with four doublestranded RNAs affects host fungal growth in Alternaria alternata. Virus Res. 140:179 -187.
3. Asiedu SK, Raghavan GSV, Gariepy Y, Reeleder R. 1986. Botrytis porri on leek in Canada. Plant Dis. 70:259.
4. Barr JN, Fearns R. 2010. How RNA viruses maintain their genome integrity. J. Gen. Virol. 91:1373-1387.
5. Castro M, et al. 1999. A new double-stranded RNA mycovirus from Botrytis cinerea. FEMS Microbiol. Lett. 175:95-99.
6. Castro M, Kramer K, Valdivia L, Ortiz S, Castillo A. 2003. A doublestranded RNA mycovirus confers hypovirulence-associated traits to Botrytis cinerea. FEMS Microbiol. Lett. 228:87-91.
7. Chen B, Choi G, Nuss DL. 1994. Attenuation of fungal virulence by synthetic infectious hypovirus transcripts. Science 264:1762-1764.
8. Chen BJ, Lamb RA. 2008. Mechanisms for enveloped virus budding: can some viruses do without an ESCRT? Virology 372:221-232.
9. Chiba S, et al. 2009. A novel bipartite double-stranded RNA mycovirus from the white root rot fungus Rosellinia necatrix: molecular and biological characterization, taxonomic considerations, and potential for biological control. J. Virol. 83:12801-12812.
10. Choi GH, Nuss DL. 1992. Hypovirulence of chestnut blight fungus conferred by an infectious viral cDNA. Science 257:800-803.
11. Dodds JA. 1980. Association of type 1 viral-like double stranded RNA with club shaped particles in hypovirulent strains of Endothia parasitica. Virology 107:1-12.
12. Dugan FM, Hellier BC, Lupien L. 2007. Pathogenic fungi in garlic seed cloves from the United States and China, and efficacy of fungicides against pathogens in garlic germplasm in Washington State. J. Phytopathol. 155: 437-445.
13. Fahima T, Kazmierczak P, Hansen DR, Pfeiffer P, van Alfen NK. 1993. Membrane-associated replication of an unencapsidated double-strand RNA of the fungus, Cryphonectria parasitica. Virology 195:81- 89.
14. Fahima T, Wu Y, Zhang L, van Alfen NK. 1994. Identification of the putative RNA polymerase of Cryphonectria hypovirus in a solubilized replication complex. J. Virol. 68:6116-6119.
15. Finn RD, et al. 2008. The Pfam protein families database. Nucleic Acids Res. 36:D281-D288.
16. Ghabrial SA, Suzuki N. 2009. Viruses of plant pathogenic fungi. Annu. Rev. Phytopathol. 47:353-384.
17. Ghabrial SA, Castón JR. 2011. Chrysoviridae, p 509-513. In Fauquet CM, et al. (ed), Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, London, United Kingdom.
18. Ghabrial SA, et al. 2011. Partitiviridae, p 523-534. In Fauquet CM, et al. (ed), Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, London, United Kingdom.
19. Heiniger U, Rigling D. 1994. Biological control of chestnut blight in Europe. Annu. Rev. Phytopathol. 32:581-599.
20. Hillman BI, Supyani S, Kondo H, Suzuki N. 2004. A reovirus of the fungus Cryphonectria parasitica that is infectious as particles and related to the Coltivirus genus of animal pathogens. J. Virol. 78:892- 898.
21. Howitt RLJ, Beever RE, Pearson MN, Forster RLS. 1995. Presence of double-stranded RNA and virus-like particles in Botrytis cinerea. Mycol. Res. 99:1472-1478.
22. Howitt RLJ, Beever RE, Pearson MN, Forster RL. 2001. Genome characterization of Botrytis virus F, a flexuous rod-shaped mycovirus resembling plant "potex-like" viruses. J. Gen. Virol. 82:67-78.
23. Howitt RLJ, Beever RE, Pearson MN, Forster RL. 2005. Genome characterization of a flexuous rod-shaped mycovirus, Botrytis virus X, reveals high amino acid identity to genes from plant "potex-like" viruses. Arch. Virol. 151:563-579.
24. Huang S, Ghabrial SA. 1996. Organization and expression of the doublestranded RNA genome of Helminthosporium victoriae 190S virus, a totivirus infecting a plant pathogenic filamentous fungus. Proc. Natl. Acad. Sci. of U. S. A. 93:12541-12546.
25. Jiang DH, Ghabrial SA. 2004. Molecular characterization of Penicillium chrysogenum virus: reconsideration of the taxonomy of the genus Chrysovirus. J. Gen. Virol. 85:2111-2121.
26. Kang JG, Wu JC, Bruenn JA, Park CM. 2001. The H1 double-stranded RNA genome of Ustilago maydis virus-H1 encodes a polyprotein that contains structural motifs for capsid polypeptide, papain-like protease, and RNA-dependent RNA polymerase. Virus Res. 76:183-189.
27. Kanematsu S, et al. 2004. A reovirus causes hypovirulence of Rosellinia necatrix. Phytopathology 94:561-568.
28. Lin HY, et al. 2007. Genome sequence, full-length infectious cDNA clone, and mapping of viral double-stranded RNA accumulation determinant of hypovirus CHV1-EP721. J. Virol. 81:1813-1820.
29. Liu H, et al. 2009. A novel mycovirus that is related to the human pathogen hepatitis E virus and Rubi-like viruses. J. Virol. 83:1981-1991.
30. MacDonald W, Fulbright D. 1991. Biological control of chestnut blight: use and limitations of transmissible hypovirulence. Plant Dis. 75:656- 661.
31. Mackenzie J. 2005. Wrapping things up about virus RNA replication. Traffic 6:967-977.
32. Mathews DH, et al. 2004. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl. Acad. Sci. U. S. A. 101:7287-7292.
33. McDonald MR, et al. 2004. Management of diseases of onions and garlic, p 149-200. In Naqvi SAMH (ed), Diseases of fruits and vegetables, vol II. Kluwer, Dordrecht, Netherlands.
34. Morris TJ, Dodds JA. 1979. Isolation and analysis of double-stranded RNA virus infected plant and fungal tissue. Phytopathology 69:854-858.
35. Newhouse JR, Hoch HC, MacDonald WL. 1983. The ultrastructure of Endothia parasitica comparison of a virulent with a hypovirulent isolate. Can. J. Bot. 61:389 -399.
36. Newhouse JR, MacDonald WL, Hoch HC. 1990. Virus-like particles in hyphae and conidia of European hypovirulent dsRNA-containing strains of Cryphonectria parasitica. Can. J. Bot. 68:90 -101.
37. Nuss DL, Koltin Y. 1990. Significance of dsRNA genetic elements in plant pathogenic fungi. Annu. Rev. Phytopathol. 28:37-58.
38. Nuss DL. 2005. Hypovirulence: mycoviruses at the fungal-plant interface. Nat. Rev. Microbiol. 3:632- 642.
39. Pearson MN, Beever RE, Boine B, Arthur K. 2009. Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol. Plant Pathol. 10:115-128.
40. Rawlings ND, Morton FR, Barrett AJ. 2006. MEROPS: the peptidase database. Nucleic Acids Res. 34:270 -272.
41. Sanderlin RS, Ghabrial SA. 1978. Physicochemical properties of two distinct types of virus-like particles from Helminthosporium victoriae. Virology 87:142-151.
42. Sasaki A, Kanematsu S, Onoue M, Oyama Y, Yoshida K. 2006. Infection of Rosellinia necatrix with purified viral particles of a member of Partitiviridae (RnPV1-W8). Arch. Virol. 151:697-707.
43. Sasaki A, et al. 2007. Artificial infection of Rosellinia necatrix with purified viral particles of a member of the genus Mycoreovirus reveals its uneven distribution in single colonies. Phytopathology 97:278 -286.
44. Segers GC, van Wezel R, Zhang X, Hong Y, Nuss DL. 2006. Hypovirus papain-like protease p29 suppresses RNA silencing in the natural fungal host and in a heterologous plant system. Eukaryot. Cells 5:896 -904.
45. Segers GC, Zhang X, Deng F, Sun Q, Nuss DL. 2007. Evidence that RNA silencing functions as an antiviral defense mechanism in fungi. Proc. Natl. Acad. Sci. U. S. A. 104:12902-12906.
46. Spear A, Sisterson MS, Yokomi R, Stenger DC. 2010. Plant-feeding insects harbor double-stranded RNA viruses encoding a novel prolinealanine rich protein and a polymerase distantly related to that of fungal viruses. Virology 404:304 -311.
47. Suzuki N, Maruyama K, Moriyama M, Nuss DL. 2003. Hypovirus papain-like protease p29 is an enhancer of viral dsRNA accumulation and vertical transmission. J. Virol. 77:11697-11707.
48. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aids by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
49. Urayama S, et al. 2010. Mycoviruses related to chrysovirus affect vegetative growth in the rice blast fungus Magnaporthe oryzae. J. Gen. Virol. 91:3085-3094.
50. Vilches S, Castillo A. 1997. A double-stranded RNA mycovirus in Botrytis cinerea. FEMS Microbiol. Lett. 155:125-130.
51. Wu MD, et al. 2007. Hypovirulence and double-stranded RNA in Botrytis cinerea. Phytopathology 97:1590 -1599.
52. Wu MD, Zhang L, Li GQ, Jiang DH, Ghabrial SA. 2010. Genome characterization of a debilitation-associated mitovirus infecting the phytopathogenic fungus Botrytis cinerea. Virology 406:117-126.
53. Xie JT, et al. 2011. A novel mycovirus closely related to hypoviruses that infects the plant pathogenic fungus Sclerotinia sclerotiorum.Virology 418: 49-56.
54. Yelton MM, Hamer JE, Timberlake WE. 1984. Transformation of Aspergillus nidulans by using a trpC plasmid. Proc. Natl. Acad. Sci. U. S. A. 81:1470 -1474.
55. Yu X, et al. 2010. A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc. Natl. Acad. Sci. U. S. A. 107:8387- 8392.
56. Zhang X, Nuss DL. 2008. A host dicer is required for defective viral RNA production and recombinant virus vector RNA instability for a positive sense RNA virus. Proc. Natl. Acad. Sci. U. S. A. 105:16749 -16754.
57. Zhang J, Li GQ, Jiang DH. 2009. First report of garlic leaf blight caused by Botrytis porri in China. Plant Dis. 93:1216.
58. Zhang J, et al. 2010. Botrytis sinoallii: a new species of the grey mould pathogen on Allium crops in China. Mycoscience 51:421- 431.
59. Zhang LY, et al. 2009. A novel virus that infecting hypovirulent strain XG36-1 of plant fungal pathogen Sclerotinia sclerotiorum. Virol. J. 6:96.