Plant-feeding insects harbor double-stranded RNA viruses encoding a novel proline-alanine rich protein and a polymerase distantly related to that of fungal viruses

Virology

Volumn 404, Issue 2, 2010, Pages 304-311

  Spear, Allyn ^a   Sisterson, Mark S ^a   Yokomi, Raymond ^a   Stenger, Drake C ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Beet leafhopper; Circulifer tenellus; Spissistilus festinus; Threecornered alfalfa hopper

Indexed keywords

DOUBLE STRANDED RNA; PROLINE ALANINE RICH PROTEIN; RNA DIRECTED RNA POLYMERASE; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ARTICLE; CIRCULIFER TENELLUS VIRUS 1; CONTROLLED STUDY; CUCURBIT YELLOW ASSOCIATED VIRUS; FUSARIUM GRAMINEARUM VIRUS 3; INSECT; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHLEBIOPSIS GIGANTEA VIRUS 2; PHYLOGENY; PLANT VIRUS; PRIORITY JOURNAL; PROTEIN EXPRESSION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RIBOSOMAL FRAMESHIFTING; RNA ISOLATION; RNA SEQUENCE; RNA VIRUS; SEQUENCE ANALYSIS; SPISSISTILUS FESTINUS VIRUS 1; VIRION; VIRUS GENOME;

ANIMALS; BASE SEQUENCE; DNA-DIRECTED RNA POLYMERASES; FUNGI; GENE EXPRESSION REGULATION, VIRAL; GENOME, VIRAL; HEMIPTERA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT VIRUSES; RNA VIRUSES; RNA, DOUBLE-STRANDED; RNA, VIRAL; VIRAL PROTEINS;

EID: 77954539543     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2010.05.015     Document Type: Article

References (33)

1. Bennett C.W. The Curly Top Disease of Sugarbeet and Other Plants. Monograph No. 7 1971, The American Phytopathological Society, St. Paul, MN.
2. Brierley I., Jenner A.J., Inglis S.C. Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal. J. Mol. Biol. 1992, 227:463-479.
3. Chen B.J., Lamb R.A. Mechanisms for enveloped virus budding: Can some viruses do without an ESCRT?. Virology 2008, 372:221-232.
4. Chiba S., Salaipeth L., Lin Y.-H., Sasaki A., Kanematsu S., Suzuki N. A novel bipartite double-stranded RNA mycovirus from the white rot fungus Rosellinia necatrix: molecular and biological characterization, taxonomic considerations, and potential for biological control. J. Virol. 2009, 83:12801-12812.
5. Coffin R.S., Coutts R.H.A. Relationships among Trialeurodes vaparariorum - transmitted yellowing viruses from Europe and North America. J. Phytopathol. 1995, 143:375-380.
6. Condron B.G., Atkins J.F., Gesteland R.F. Frameshifting in gene 10 of bacteriophage T7. J. Bact. 1991, 173:6998-7003.
7. den Boon J.A., Snijder E.J., Chirnside E.D., de Vries A.A.F., Horzinek M.C., Spaan W.J.M. Equine arteritis virus is not a togavirus, but belongs to the coronaviruslike superfamily. J. Virol. 1991, 65:2910-2920.
8. Farabaugh P.J. Programmed translational frameshifting. Ann. Rev. Genet. 1996, 30:507-528.
9. Filbin M.E., Kieft J.S. Toward a structural understanding of IRES RNA function. Curr. Opin. Struct. Biol. 2009, 19:267-276.
10. Fudl-Allah A.A., Calavan E.C. Cellular morphology and reproduction of the mycoplasma-like organism associated with citrus stubborn disease. Phytopathology 1974, 64:1309-1313.
11. Ghabrial S.A., Nibert M.L. Victoriavirus, a new genus of fungal viruses in the family Totiviridae. Arch. Virol. 2009, 154:373-379.
12. Huang C.-H., Lu C.L., Chiu H.-T. A heuristic approach for detecting RNA H-type pseudoknots. Bioinformatics 2005, 21:3501-3508.
13. Hunnicutt L.E., Hunter W.B., Cave R.D., Powell C.A., Mozoruk J.J. Genome sequence and molecular characterization of Homalodisca coagulata virus-1, a novel virus discovered in the glassy-winged sharpshooter (Hemiptera: Cicadellidae). Virology 2006, 350:67-78.
14. Kay B.K., Williamson M.P., Sudol M. The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains. FASEB J. 2000, 14:231-241.
15. Kozlakidis Z., Hacker C.V., Bradley D., Jamal A., Phoon X., Webber J., Brasier C.M., Buck K.W., Coutts R.H.A. Molecular characterization of two novel double-stranded RNA elements from Phlebiopsis gigantea. Virus Genes 2009, 39:132-136.
16. Maga J.A., Widmer G., LeBowitz J.H. Leishmania RNA virus 1-mediated cap-independent translation. Mol. Cell. Biol. 1995, 15:4884-4889.
17. Mello A.F., Yokomi R.K., Melcher U., Chen J., Fletcher J. Citrus stubborn Severity is associated with Spiroplasma citri titer but not with bacterial genotype. Plant Dis. 2009, 94:75-82.
18. Mertens P. The dsRNA viruses. Virus Res. 2004, 101:3-13.
19. Moon S., Byun Y., Kim H., Jeong S., Han K. Predicting genes expressed via -1 and +1 frameshifts. Nucl. Acids Res. 2004, 32:4884-4892.
20. Morris T.J., Dodds J.A. Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissue. Phytopathology 1979, 69:854-858.
21. Potgieter A.C., Steele A.D., van Dijk A.A. Cloning of complete genome sets of six dsRNA viruses using an improved cloning methods for large dsRNA genes. J. Gen. Virol. 2002, 83:2215-2223.
22. Rath A., Davidson A.R., Deber C.M. The structure of "unstructured" regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition. Biopolymers (Pept. Sci.) 2005, 80:179-185.
23. Stenger D.C., Carbonaro D., Duffus J.E. Genomic characterization of phenotypic variants of beet curly top virus. J. Gen. Virol. 1990, 71:2211-2215.
24. Stenger D.C., Sisterson M.S., Krugner R., Backus E.A., Hunter W.B. A new Phytoreovirus infecting the glassy-winged sharpshooter (Homalodisca vitripennis). Virology 2009, 386:469-477.
25. Stern V.M., Smith R.F., van den Bosch R., Hagen K.S. The integrated control concept. Hilgardia 1959, 29:81-101.
26. Summers C.G., Godfrey L.D., Natwick E.T. Managing insects in alfalfa. Irrigated Alfalfa Management For Mediterranean and Desert Zones. University of California Agriculture and Natural Resource Publication 8295 2007, C.G. Summers, D.H. Putnam (Eds.).
27. Walter A.E., Turner D.H., Kim J., Lyttle M.H., Muller P., Mathews D.H., Zuker M. Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding. Proc. Natl. Acad. Sci. U. S. A. 1994, 91:9218-9222.
28. Wilermuth V.L. Three-cornered alfalfa hopper. J. Agr. Res. 1915, 3:343-362.
29. Williamson M.P. The structure and function of proline-rich regions in proteins. Biochem. J. 1994, 297:249-260.
30. Wirblich C., Bhattacharya B., Roy P. Nonstructural protein 3 of bluetongue virus assists virus release by recruiting ESCRT-1 protein Tsg101. J. Virol. 2006, 80:460-473.
31. Xayaphoummine A., Bucher T., Isambert H. Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. Nucl. Acids Res. 2005, 33:605-610.
32. Yu J., Kwon S.-J., Lee M.-K., Son M., Kim K.-H. Complete nucleotide sequence of double-stranded RNA viruses from Fusarium graminearum strain DK3. Arch. Virol. 2009, 154:1855-1858.
33. Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucl. Acids Res. 2003, 31:3406-3415.