-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389- 3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
3
-
-
0036175114
-
The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination
-
Auger S, Yuen WH, Danchin A, Martin-Verstraete I. 2002. The metIC operon involved in methionine biosynthesis in Bacillus subtilis is controlled by transcription antitermination. Microbiology 148:507-518.
-
(2002)
Microbiology
, vol.148
, pp. 507-518
-
-
Auger, S.1
Yuen, W.H.2
Danchin, A.3
Martin-Verstraete, I.4
-
4
-
-
67849122320
-
MEME suite: tools for motif discovery and searching
-
doi:10.1093/nar/gkp335
-
Bailey TL, et al. 2009. MEME suite: tools for motif discovery and searching. Nucleic Acids Res. 37:W202-W208. doi:10.1093/nar/gkp335.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Bailey, T.L.1
-
5
-
-
38949153839
-
Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis
-
Belitsky BR, Sonenshein AL. 2008. Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis. J. Bacteriol. 190:1224 -1236.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 1224-1236
-
-
Belitsky, B.R.1
Sonenshein, A.L.2
-
6
-
-
3242759038
-
Three different systems participate in L-cystine uptake in Bacillus subtilis
-
Burguiere P, Auger S, Hullo MF, Danchin A, Martin-Verstraete I. 2004. Three different systems participate in L-cystine uptake in Bacillus subtilis. J. Bacteriol. 186:4875- 4884.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4875-4884
-
-
Burguiere, P.1
Auger, S.2
Hullo, M.F.3
Danchin, A.4
Martin-Verstraete, I.5
-
7
-
-
30744458839
-
Regulation of aspartokinase, aspartate semialdehyde dehydrogenase, dihydrodipicolinate synthase and dihydrodipicolinate reductase in Lactobacillus plantarum
-
Cahyanto MN, Kawasaki H, Nagashio M, Fujiyama K, Seki T. 2006. Regulation of aspartokinase, aspartate semialdehyde dehydrogenase, dihydrodipicolinate synthase and dihydrodipicolinate reductase in Lactobacillus plantarum. Microbiology 152:105-112.
-
(2006)
Microbiology
, vol.152
, pp. 105-112
-
-
Cahyanto, M.N.1
Kawasaki, H.2
Nagashio, M.3
Fujiyama, K.4
Seki, T.5
-
8
-
-
78649348683
-
The global nutritional regulator CodY is an essential protein in the human pathogen Streptococcus pneumoniae
-
Caymaris S, et al. 2010. The global nutritional regulator CodY is an essential protein in the human pathogen Streptococcus pneumoniae. Mol. Microbiol. 78:344 -360.
-
(2010)
Mol. Microbiol.
, vol.78
, pp. 344-360
-
-
Caymaris, S.1
-
9
-
-
80052929972
-
S-Bacillithiolation protects against hypochlorite stress in Bacillus subtilis as revealed by transcriptomics and redox proteomics Mol
-
doi:10.1074/10M111.009506.mcp.M111.009506
-
Chi BK, et al. 2011. S-Bacillithiolation protects against hypochlorite stress in Bacillus subtilis as revealed by transcriptomics and redox proteomics Mol. Cell. Proteomics 10:M111.009506. doi:10.1074/ mcp.M111.009506.
-
(2011)
Cell. Proteomics
-
-
Chi, B.K.1
-
10
-
-
19544377011
-
A nucleosidase required for in vivo function of the S-adenosyl-L-methionine radical enzyme, biotin synthase
-
Choi-Rhee E, Cronan JE. 2005. A nucleosidase required for in vivo function of the S-adenosyl-L-methionine radical enzyme, biotin synthase. Chem. Biol. 12:589 -593.
-
(2005)
Chem. Biol.
, vol.12
, pp. 589-593
-
-
Choi-Rhee, E.1
Cronan, J.E.2
-
11
-
-
26644445945
-
The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element
-
den Hengst CD, et al. 2005. The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element. J. Biol. Chem. 280:34332- 34342.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 34332-34342
-
-
den Hengst, C.D.1
-
12
-
-
0033988405
-
Identification and characterization of a cystathionine beta/gamma-lyase from Lactococcus lactis ssp. cremoris MG1363
-
Dobric N, Limsowtin GK, Hillier AJ, Dudman NP, Davidson BE. 2000. Identification and characterization of a cystathionine beta/gamma-lyase from Lactococcus lactis ssp. cremoris MG1363. FEMS Microbiol. Lett. 182: 249-254.
-
(2000)
FEMS Microbiol. Lett.
, vol.182
, pp. 249-254
-
-
Dobric, N.1
Limsowtin, G.K.2
Hillier, A.J.3
Dudman, N.P.4
Davidson, B.E.5
-
13
-
-
0003516147
-
-
Cambridge University Press, Cambridge, United Kingdom
-
Durbin R, Eddy S, Krogh A, Mitchison G. 1998. Biological sequence analysis: probabilistic models of proteins and nucleic acids. Cambridge University Press, Cambridge, United Kingdom.
-
(1998)
Biological sequence analysis: probabilistic models of proteins and nucleic acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
15
-
-
0034604382
-
Prediction of transcription terminators in bacterial genomes
-
Ermolaeva MD, Khalak HG, White O, Smith HO, Salzberg SL. 2000. Prediction of transcription terminators in bacterial genomes. J. Mol. Biol. 301:27-33.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 27-33
-
-
Ermolaeva, M.D.1
Khalak, H.G.2
White, O.3
Smith, H.O.4
Salzberg, S.L.5
-
16
-
-
0036134771
-
Regulation of the metC-cysK operon, involved in sulfur metabolism in Lactococcus lactis
-
Fernandez M, Kleerebezem M, Kuipers OP, Siezen RJ, van Kranenburg R. 2002. Regulation of the metC-cysK operon, involved in sulfur metabolism in Lactococcus lactis. J. Bacteriol. 184:82-90.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 82-90
-
-
Fernandez, M.1
Kleerebezem, M.2
Kuipers, O.P.3
Siezen, R.J.4
van Kranenburg, R.5
-
17
-
-
0342614210
-
Molecular and functional analyses of the metC gene of Lactococcus lactis, encoding cystathionine beta-lyase
-
Fernandez M, et al. 2000. Molecular and functional analyses of the metC gene of Lactococcus lactis, encoding cystathionine beta-lyase. Appl. Environ. Microbiol. 66:42- 48.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 42-48
-
-
Fernandez, M.1
-
18
-
-
75549090603
-
The Pfam protein families database
-
doi:10.1093/nar/gkp985
-
Finn RD, et al. 2010. The Pfam protein families database. Nucleic Acids Res. 38:D211-D222. doi:10.1093/nar/gkp985.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
-
19
-
-
79960854989
-
Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior
-
doi:10.1186/1471-2164-12-385
-
Francke C, et al. 2011. Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior. BMC Genomics 12:385. doi:10.1186/1471-2164-12-385.
-
(2011)
BMC Genomics
, vol.12
, pp. 385
-
-
Francke, C.1
-
20
-
-
42449147860
-
A generic approach to identify transcription factor-specific operator motifs; inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1
-
doi:10.1186/1471-2164-9-145
-
Francke C, Kerkhoven R, Wels M, Siezen RJ. 2008. A generic approach to identify transcription factor-specific operator motifs; inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1.BMC Genomics 9:145. doi:10.1186/1471-2164-9-145.
-
(2008)
BMC Genomics
, vol.9
, pp. 145
-
-
Francke, C.1
Kerkhoven, R.2
Wels, M.3
Siezen, R.J.4
-
21
-
-
80052970361
-
Crystal structures of cobalamin-independent methionine synthase (MetE) from Streptococcus mutans: a dynamic zincinversion model
-
Fu TM, et al. 2011. Crystal structures of cobalamin-independent methionine synthase (MetE) from Streptococcus mutans: a dynamic zincinversion model. J. Mol. Biol. 412:688-697.
-
(2011)
J. Mol. Biol.
, vol.412
, pp. 688-697
-
-
Fu, T.M.1
-
22
-
-
33644792751
-
The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase
-
Fuchs RT, Grundy FJ, Henkin TM. 2006. The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase. Nat. Struct. Mol. Biol. 13:226 -233.
-
(2006)
Nat. Struct. Mol. Biol
, vol.13
, pp. 226-233
-
-
Fuchs, R.T.1
Grundy, F.J.2
Henkin, T.M.3
-
23
-
-
0028306093
-
Clustering and co-transcription of the Bacillus subtilis genes encoding the aminoacyl-tRNA synthetases specific for glutamate and for cysteine and the first enzyme for cysteine biosynthesis
-
Gagnon Y, et al. 1994. Clustering and co-transcription of the Bacillus subtilis genes encoding the aminoacyl-tRNA synthetases specific for glutamate and for cysteine and the first enzyme for cysteine biosynthesis. J. Biol. Chem. 269:7473-7482.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 7473-7482
-
-
Gagnon, Y.1
-
25
-
-
14044272177
-
Molecular characterization of the CmbR activator-binding site in the metC-cysK promoter region in Lactococcus lactis
-
Golic N, Schliekelmann M, Fernandez M, Kleerebezem M, van Kranenburg R. 2005. Molecular characterization of the CmbR activator-binding site in the metC-cysK promoter region in Lactococcus lactis. Microbiology 151:439-446.
-
(2005)
Microbiology
, vol.151
, pp. 439-446
-
-
Golic, N.1
Schliekelmann, M.2
Fernandez, M.3
Kleerebezem, M.4
van Kranenburg, R.5
-
26
-
-
0026630973
-
Comparison of cobalamin-independent and cobalamin-dependent methionine synthases from Escherichia coli: two solutions to the same chemical problem
-
Gonzalez JC, Banerjee RV, Huang S, Sumner JS, Matthews RG. 1992. Comparison of cobalamin-independent and cobalamin-dependent methionine synthases from Escherichia coli: two solutions to the same chemical problem. Biochemistry 31:6045- 6056.
-
(1992)
Biochemistry
, vol.31
, pp. 6045-6056
-
-
Gonzalez, J.C.1
Banerjee, R.V.2
Huang, S.3
Sumner, J.S.4
Matthews, R.G.5
-
27
-
-
0031735563
-
The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria
-
Grundy FJ, Henkin TM. 1998. The S box regulon: a new global transcription termination control system for methionine and cysteine biosynthesis genes in gram-positive bacteria. Mol. Microbiol. 30:737-749.
-
(1998)
Mol. Microbiol
, vol.30
, pp. 737-749
-
-
Grundy, F.J.1
Henkin, T.M.2
-
28
-
-
29244489781
-
Overall control of nitrogen metabolism in Lactococcus lactis by CodY, and possible models for CodY regulation in Firmicutes
-
Guedon E, Sperandio B, Pons N, Ehrlich SD, Renault P. 2005. Overall control of nitrogen metabolism in Lactococcus lactis by CodY, and possible models for CodY regulation in Firmicutes. Microbiology 151:3895-3909.
-
(2005)
Microbiology
, vol.151
, pp. 3895-3909
-
-
Guedon, E.1
Sperandio, B.2
Pons, N.3
Ehrlich, S.D.4
Renault, P.5
-
29
-
-
63849299263
-
Biochemical features and functional implications of the RNA-based T-box regulatory mechanism
-
Gutierrez-Preciado A, Henkin TM, Grundy FJ, Yanofsky C, Merino E. 2009. Biochemical features and functional implications of the RNA-based T-box regulatory mechanism. Microbiol. Mol. Biol. Rev. 73:36-61.
-
(2009)
Microbiol. Mol. Biol. Rev.
, vol.73
, pp. 36-61
-
-
Gutierrez-Preciado, A.1
Henkin, T.M.2
Grundy, F.J.3
Yanofsky, C.4
Merino, E.5
-
30
-
-
33845919625
-
Conversion of methionine to cysteine in Bacillus subtilis and its regulation
-
Hullo MF, et al. 2007. Conversion of methionine to cysteine in Bacillus subtilis and its regulation. J. Bacteriol. 189:187-197.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 187-197
-
-
Hullo, M.F.1
-
31
-
-
37849039819
-
Cloning and characterization of two Lactobacillus casei genes encoding a cystathionine lyase
-
Irmler S, Raboud S, Beisert B, Rauhut D, Berthoud H. 2008. Cloning and characterization of two Lactobacillus casei genes encoding a cystathionine lyase. Appl. Environ. Microbiol. 74:99 -106.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 99-106
-
-
Irmler, S.1
Raboud, S.2
Beisert, B.3
Rauhut, D.4
Berthoud, H.5
-
32
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
doi:10.1093/nar/gkr988
-
Kanehisa M, Goto S, Sato Y, Furumichi M, Tanabe M. 2012. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res. 40:D109-D114. doi:10.1093/nar/gkr988.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
33
-
-
0022630140
-
Distribution of two kinds of cystathionine gamma-synthase in various bacteria
-
Kanzaki H, Kobayashi M, Nagasawa T, Yamada H. 1986. Distribution of two kinds of cystathionine gamma-synthase in various bacteria. FEMS Microbiol. Lett. 33:65- 68.
-
(1986)
FEMS Microbiol. Lett.
, vol.33
, pp. 65-68
-
-
Kanzaki, H.1
Kobayashi, M.2
Nagasawa, T.3
Yamada, H.4
-
34
-
-
1842821076
-
Visualization for genomics: the Microbial Genome Viewer
-
Kerkhoven R, van Enckevort FH, Boekhorst J, Molenaar D, Siezen RJ. 2004. Visualization for genomics: the Microbial Genome Viewer. Bioinformatics 20:1812-1814.
-
(2004)
Bioinformatics
, vol.20
, pp. 1812-1814
-
-
Kerkhoven, R.1
van Enckevort, F.H.2
Boekhorst, J.3
Molenaar, D.4
Siezen, R.J.5
-
36
-
-
35448998130
-
Transcriptional regulation of the methionine and cysteine transport and metabolism in streptococci
-
Kovaleva GY, Gelfand MS. 2007. Transcriptional regulation of the methionine and cysteine transport and metabolism in streptococci. FEMS Microbiol. Lett. 276:207-215.
-
(2007)
FEMS Microbiol. Lett.
, vol.276
, pp. 207-215
-
-
Kovaleva, G.Y.1
Gelfand, M.S.2
-
37
-
-
36448991500
-
Clustal W and Clustal X version 2
-
Larkin MA, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
-
(2007)
0. Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
38
-
-
33846632778
-
Functional analysis of luxS in the probiotic strain Lactobacillus rhamnosus GG reveals a central metabolic role important for growth and biofilm formation
-
Lebeer S, et al. 2007. Functional analysis of luxS in the probiotic strain Lactobacillus rhamnosus GG reveals a central metabolic role important for growth and biofilm formation. J. Bacteriol. 189:860-871.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 860-871
-
-
Lebeer, S.1
-
39
-
-
48149101967
-
Global regulation by (p) ppGpp and CodY in Streptococcus mutans
-
Lemos JA, Nascimento MM, Lin VK, Abranches J, Burne RA. 2008. Global regulation by (p) ppGpp and CodY in Streptococcus mutans. J. Bacteriol. 190:5291-5299.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 5291-5299
-
-
Lemos, J.A.1
Nascimento, M.M.2
Lin, V.K.3
Abranches, J.4
Burne, R.A.5
-
40
-
-
68249162066
-
Possible promoter regions within the proteolytic system in Streptococcus thermophilus and their interaction with the CodY homolog
-
Liu F, Du L, Du P, Huo G. 2009. Possible promoter regions within the proteolytic system in Streptococcus thermophilus and their interaction with the CodY homolog. FEMS Microbiol. Lett. 297:164 -172.
-
(2009)
FEMS Microbiol. Lett.
, vol.297
, pp. 164-172
-
-
Liu, F.1
Du, L.2
Du, P.3
Huo, G.4
-
41
-
-
49449101678
-
Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria
-
Liu M, Nauta A, Francke C, Siezen RJ. 2008. Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria. Appl. Environ. Microbiol. 74:4590-4600.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 4590-4600
-
-
Liu, M.1
Nauta, A.2
Francke, C.3
Siezen, R.J.4
-
42
-
-
78649529299
-
SAM recognition and conformational switching mechanism in the Bacillus subtilis yitJ S box/SAM-I riboswitch
-
Lu C, et al. 2010. SAM recognition and conformational switching mechanism in the Bacillus subtilis yitJ S box/SAM-I riboswitch. J. Mol. Biol. 404:803- 818.
-
(2010)
J. Mol. Biol.
, vol.404
, pp. 803-818
-
-
Lu, C.1
-
43
-
-
58949097886
-
Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins
-
Maddocks SE, Oyston PC. 2008. Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 154: 3609-3623.
-
(2008)
Microbiology
, vol.154
, pp. 3609-3623
-
-
Maddocks, S.E.1
Oyston, P.C.2
-
44
-
-
0029884411
-
Cloning and transcriptional analysis of two threonine biosynthetic genes from Lactococcus lactis MG1614
-
Madsen SM, Albrechtsen B, Hansen EB, Israelsen H. 1996. Cloning and transcriptional analysis of two threonine biosynthetic genes from Lactococcus lactis MG1614. J. Bacteriol. 178:3689 -3694.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3689-3694
-
-
Madsen, S.M.1
Albrechtsen, B.2
Hansen, E.B.3
Israelsen, H.4
-
45
-
-
0029451604
-
Molecular cloning of the hom-thrC-thrB cluster from Bacillus sp. ULM1: expression of the thrC gene in Escherichia coli and Corynebacteria, and evolutionary relationships of the threonine genes
-
Malumbres M, Mateos LM, Guerrero C, Martin JF. 1995. Molecular cloning of the hom-thrC-thrB cluster from Bacillus sp. ULM1: expression of the thrC gene in Escherichia coli and Corynebacteria, and evolutionary relationships of the threonine genes. Folia Microbiol. (Praha) 40:595- 606.
-
(1995)
Folia Microbiol. (Praha)
, vol.40
, pp. 595-606
-
-
Malumbres, M.1
Mateos, L.M.2
Guerrero, C.3
Martin, J.F.4
-
46
-
-
33746041078
-
YtjE from Lactococcus lactis IL1403 is a C-S lyase with alpha, gamma-elimination activity toward methionine
-
Martinez-Cuesta MC, et al. 2006. YtjE from Lactococcus lactis IL1403 is a C-S lyase with alpha, gamma-elimination activity toward methionine. Appl. Environ. Microbiol. 72:4878-4884.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 4878-4884
-
-
Martinez-Cuesta, M.C.1
-
47
-
-
0037453069
-
Transcription termination control of the S box system: direct measurement of Sadenosylmethionine by the leader RNA
-
McDaniel BA, Grundy FJ, Artsimovitch I, Henkin TM. 2003. Transcription termination control of the S box system: direct measurement of Sadenosylmethionine by the leader RNA. Proc. Natl. Acad. Sci. U. S. A. 100:3083-3088.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 3083-3088
-
-
McDaniel, B.A.1
Grundy, F.J.2
Artsimovitch, I.3
Henkin, T.M.4
-
48
-
-
33646557632
-
Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression
-
McDaniel BA, Grundy FJ, Kurlekar VP, Tomsic J, Henkin TM. 2006. Identification of a mutation in the Bacillus subtilis S-adenosylmethionine synthetase gene that results in derepression of S-box gene expression. J. Bacteriol. 188:3674 -3681.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3674-3681
-
-
McDaniel, B.A.1
Grundy, F.J.2
Kurlekar, V.P.3
Tomsic, J.4
Henkin, T.M.5
-
49
-
-
0036776777
-
The Escherichia coli metD locus encodes anABCtransporter which includes Abc (MetN), YaeE (MetI), and YaeC (MetQ)
-
Merlin C, Gardiner G, Durand S, Masters M. 2002. The Escherichia coli metD locus encodes anABCtransporter which includes Abc (MetN), YaeE (MetI), and YaeC (MetQ). J. Bacteriol. 184:5513-5517.
-
(2002)
J. Bacteriol
, vol.184
, pp. 5513-5517
-
-
Merlin, C.1
Gardiner, G.2
Durand, S.3
Masters, M.4
-
50
-
-
0036796553
-
Frequent oligonucleotide motifs in genomes of three streptococci
-
Mrazek J, Gaynon LH, Karlin S. 2002. Frequent oligonucleotide motifs in genomes of three streptococci. Nucleic Acids Res. 30:4216-4221.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4216-4221
-
-
Mrazek, J.1
Gaynon, L.H.2
Karlin, S.3
-
51
-
-
0036135596
-
Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg
-
Ohshima H, Matsuoka S, Asai K, Sadaie Y. 2002. Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg. J. Bacteriol. 184:381-389.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 381-389
-
-
Ohshima, H.1
Matsuoka, S.2
Asai, K.3
Sadaie, Y.4
-
52
-
-
77952905782
-
The L-cysteine/L-cystine shuttle system provides reducing equivalents to the periplasm in Escherichia coli
-
Ohtsu I, et al. 2010. The L-cysteine/L-cystine shuttle system provides reducing equivalents to the periplasm in Escherichia coli. J. Biol. Chem. 285:17479 -17487.
-
(2010)
J. Biol. Chem
, vol.285
, pp. 17479-17487
-
-
Ohtsu, I.1
-
53
-
-
0037208159
-
The ERGO (TM) genome analysis and discovery system
-
Overbeek R, et al. 2003. The ERGO (TM) genome analysis and discovery system. Nucleic Acids Res. 31:164 -171.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 164-171
-
-
Overbeek, R.1
-
54
-
-
0023754148
-
Cloning and nucleotide sequence of the Bacillus subtilis hom gene coding for homoserine dehydrogenase. Structural and evolutionary relationships with Escherichia coli aspartokinaseshomoserine dehydrogenases I and II
-
Parsot C, Cohen GN. 1988. Cloning and nucleotide sequence of the Bacillus subtilis hom gene coding for homoserine dehydrogenase. Structural and evolutionary relationships with Escherichia coli aspartokinaseshomoserine dehydrogenases I and II. J. Biol. Chem. 263:14654 -14660.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 14654-14660
-
-
Parsot, C.1
Cohen, G.N.2
-
55
-
-
78650238422
-
Methylthioadenosine/S-adenosylhomocysteine nucleosidase, a critical enzyme for bacterial metabolism
-
Parveen N, Cornell KA. 2011. Methylthioadenosine/S-adenosylhomocysteine nucleosidase, a critical enzyme for bacterial metabolism. Mol. Microbiol. 79:7-20.
-
(2011)
Mol. Microbiol.
, vol.79
, pp. 7-20
-
-
Parveen, N.1
Cornell, K.A.2
-
56
-
-
0033064681
-
In vivo and in vitro processing of the Bacillus subtilis transcript coding for glutamyl-tRNA synthetase, serine acetyltransferase, and cysteinyl-tRNA synthetase
-
Pelchat M, Lapointe J. 1999. In vivo and in vitro processing of the Bacillus subtilis transcript coding for glutamyl-tRNA synthetase, serine acetyltransferase, and cysteinyl-tRNA synthetase. RNA 5:281-289.
-
(1999)
RNA
, vol.5
, pp. 281-289
-
-
Pelchat, M.1
Lapointe, J.2
-
57
-
-
84859436530
-
NCBI reference sequences (RefSeq): current status, new features and genome annotation policy
-
doi:10.1093/nar/gkr1079
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR. 2012. NCBI reference sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 40:D130-D135. doi:10.1093/nar/gkr1079.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
58
-
-
14844340465
-
Crystal structure of S-ribosylhomocysteinase (LuxS) in complex with a catalytic 2-ketone intermediate
-
Rajan R, Zhu J, Hu X, Pei D, Bell CE. 2005. Crystal structure of S-ribosylhomocysteinase (LuxS) in complex with a catalytic 2-ketone intermediate. Biochemistry 44:3745-3753.
-
(2005)
Biochemistry
, vol.44
, pp. 3745-3753
-
-
Rajan, R.1
Zhu, J.2
Hu, X.3
Pei, D.4
Bell, C.E.5
-
59
-
-
3042639887
-
Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems
-
Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS. 2004. Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems. Nucleic Acids Res. 32:3340 -3353.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 3340-3353
-
-
Rodionov, D.A.1
Vitreschak, A.G.2
Mironov, A.A.3
Gelfand, M.S.4
-
60
-
-
77957360781
-
The LysR-type nitrogen assimilation control protein forms complexes with both long and short DNA binding sites in the absence of coeffectors
-
Rosario CJ, Frisch RL, Bender RA. 2010. The LysR-type nitrogen assimilation control protein forms complexes with both long and short DNA binding sites in the absence of coeffectors. J. Bacteriol. 192:4827- 4833.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 4827-4833
-
-
Rosario, C.J.1
Frisch, R.L.2
Bender, R.A.3
-
61
-
-
75549088687
-
Database resources of the National Center for Biotechnology Information
-
doi:10.1093/ nar/gkp967
-
Sayers EW, et al. 2010. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38:D5-D16. doi:10.1093/ nar/gkp967.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Sayers, E.W.1
-
62
-
-
0027446708
-
Molecular biology of the LysR family of transcriptional regulators
-
Schell MA. 1993. Molecular biology of the LysR family of transcriptional regulators. Annu. Rev. Microbiol. 47:597- 626.
-
(1993)
Annu. Rev. Microbiol.
, vol.47
, pp. 597-626
-
-
Schell, M.A.1
-
63
-
-
0015793310
-
Threonine synthetase-catalyzed conversion of phosphohomoserine to alpha-ketobutyrate in Bacillus subtilis
-
Schildkraut I, Greer S. 1973. Threonine synthetase-catalyzed conversion of phosphohomoserine to alpha-ketobutyrate in Bacillus subtilis. J. Bacteriol. 115:777-785.
-
(1973)
J. Bacteriol.
, vol.115
, pp. 777-785
-
-
Schildkraut, I.1
Greer, S.2
-
64
-
-
0032945180
-
Purification and properties of NADH-dependent 5,10-methylenetetrahydrofolate reductase (MetF) from Escherichia coli
-
Sheppard CA, Trimmer EE, Matthews RG. 1999. Purification and properties of NADH-dependent 5,10-methylenetetrahydrofolate reductase (MetF) from Escherichia coli. J. Bacteriol. 181:718 -725.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 718-725
-
-
Sheppard, C.A.1
Trimmer, E.E.2
Matthews, R.G.3
-
65
-
-
38549162091
-
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
-
doi: 10.1093/nar/gkm910
-
Sierro N, Makita Y, de Hoon M, Nakai K. 2008. DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res. 36:D93-D96. doi: 10.1093/nar/gkm910.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Sierro, N.1
Makita, Y.2
de Hoon, M.3
Nakai, K.4
-
66
-
-
0015918969
-
Threonine synthetase of Bacillus subtilis. The nature of an associated dehydratase activity
-
Skarstedt MT, Greer SB. 1973. Threonine synthetase of Bacillus subtilis. The nature of an associated dehydratase activity. J. Biol. Chem. 248:1032- 1044.
-
(1973)
J. Biol. Chem.
, vol.248
, pp. 1032-1044
-
-
Skarstedt, M.T.1
Greer, S.B.2
-
67
-
-
15744389217
-
CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria
-
Sonenshein AL. 2005. CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria. Curr. Opin. Microbiol. 8:203-207.
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 203-207
-
-
Sonenshein, A.L.1
-
68
-
-
34948881211
-
Control of methionine synthesis and uptake by MetR and homocysteine in Streptococcus mutans
-
Sperandio B, et al. 2007. Control of methionine synthesis and uptake by MetR and homocysteine in Streptococcus mutans. J. Bacteriol. 189:7032-7044.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 7032-7044
-
-
Sperandio, B.1
-
69
-
-
77954373711
-
Three paralogous LysR-type transcriptional regulators control sulfur amino acid supply in Streptococcus mutans
-
Sperandio B, et al. 2010. Three paralogous LysR-type transcriptional regulators control sulfur amino acid supply in Streptococcus mutans. J. Bacteriol. 192:3464 -3473.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 3464-3473
-
-
Sperandio, B.1
-
70
-
-
18944364877
-
Sulfur amino acid metabolism and its control in Lactococcus lactis IL1403
-
Sperandio B, Polard P, Ehrlich DS, Renault P, Guedon E. 2005. Sulfur amino acid metabolism and its control in Lactococcus lactis IL1403. J. Bacteriol. 187:3762-3778.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3762-3778
-
-
Sperandio, B.1
Polard, P.2
Ehrlich, D.S.3
Renault, P.4
Guedon, E.5
-
71
-
-
79958807695
-
The CodY pleiotropic repressor controls virulence in gram-positive pathogens
-
Stenz L, et al. 2011. The CodY pleiotropic repressor controls virulence in gram-positive pathogens. FEMS Immunol. Med. Microbiol. 62:123-139.
-
(2011)
FEMS Immunol. Med. Microbiol
, vol.62
, pp. 123-139
-
-
Stenz, L.1
-
72
-
-
34548703833
-
Preparation, crystallization and preliminary X-ray analysis of threonine synthase from Streptococcus mutans
-
Tang DW, et al. 2007. Preparation, crystallization and preliminary X-ray analysis of threonine synthase from Streptococcus mutans. Protein Pept. Lett. 14:836-838.
-
(2007)
Protein Pept. Lett.
, vol.14
, pp. 836-838
-
-
Tang, D.W.1
-
73
-
-
29244461323
-
In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments
-
Teusink B, et al. 2005. In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments. Appl. Environ. Microbiol. 71:7253-7262.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7253-7262
-
-
Teusink, B.1
-
74
-
-
0032924516
-
S-Methylmethionine metabolism in Escherichia coli
-
Thanbichler M, Neuhierl B, Bock A. 1999. S-Methylmethionine metabolism in Escherichia coli. J. Bacteriol. 181:662- 665.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 662-665
-
-
Thanbichler, M.1
Neuhierl, B.2
Bock, A.3
-
75
-
-
20444478991
-
Riboswitches as versatile gene control elements
-
Tucker BJ, Breaker RR. 2005. Riboswitches as versatile gene control elements. Curr. Opin. Struct. Biol. 15:342-348.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 342-348
-
-
Tucker, B.J.1
Breaker, R.R.2
-
77
-
-
41649115061
-
Comparative genomic analysis of T-box regulatory systems in bacteria
-
Vitreschak AG, Mironov AA, Lyubetsky VA, Gelfand MS. 2008. Comparative genomic analysis of T-box regulatory systems in bacteria. RNA 14:717-735.
-
(2008)
RNA
, vol.14
, pp. 717-735
-
-
Vitreschak, A.G.1
Mironov, A.A.2
Lyubetsky, V.A.3
Gelfand, M.S.4
-
79
-
-
0036271217
-
Studies on the role of the metK gene product of Escherichia coli K-12
-
Wei Y, Newman EB. 2002. Studies on the role of the metK gene product of Escherichia coli K-12. Mol. Microbiol. 43:1651-1656.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1651-1656
-
-
Wei, Y.1
Newman, E.B.2
-
80
-
-
48649110623
-
An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters
-
doi:10.1186/1471-2164-9-330
-
Wels M, Groot Kormelink T, Kleerebezem M, Siezen RJ, Francke C. 2008. An in silico analysis of T-box regulated genes and T-box evolution in prokaryotes, with emphasis on prediction of substrate specificity of transporters. BMC Genomics 9:330. doi:10.1186/1471-2164-9-330.
-
(2008)
BMC Genomics
, vol.9
, pp. 330
-
-
Wels, M.1
Groot Kormelink, T.2
Kleerebezem, M.3
Siezen, R.J.4
Francke, C.5
-
81
-
-
79958111878
-
Crystallization and preliminary crystallographic studies of UbiG, an O-methyltransferase from Escherichia coli
-
Xing L, et al. 2011. Crystallization and preliminary crystallographic studies of UbiG, an O-methyltransferase from Escherichia coli. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 67:727-729.
-
(2011)
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.
, vol.67
, pp. 727-729
-
-
Xing, L.1
-
82
-
-
0041657693
-
A transporter of Escherichia coli specific for L- and D-methionine is the prototype for a new family within the ABC superfamily
-
Zhang Z, et al. 2003. A transporter of Escherichia coli specific for L- and D-methionine is the prototype for a new family within the ABC superfamily. Arch. Microbiol. 180:88 -100.
-
(2003)
Arch. Microbiol.
, vol.180
, pp. 88-100
-
-
Zhang, Z.1
-
83
-
-
43149089847
-
A single amino acid change is responsible for evolution of acyltransferase specificity in bacterial methionine biosynthesis
-
Zubieta C, Arkus KA, Cahoon RE, Jez JM. 2008. A single amino acid change is responsible for evolution of acyltransferase specificity in bacterial methionine biosynthesis. J. Biol. Chem. 283:7561-7567.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 7561-7567
-
-
Zubieta, C.1
Arkus, K.A.2
Cahoon, R.E.3
Jez, J.M.4
|