Visualization for genomics: The Microbial Genome Viewer

Bioinformatics

Volumn 20, Issue 11, 2004, Pages 1812-1814

  Kerkhoven, Robert ^a   van Enckevort, Frank H J ^a,b   Boekhorst, Jos ^a   Molenaar, Douwe ^b,c   Siezen, Roland J ^a,b,c  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^b NIZO FOOD RESEARCH   (Netherlands)

^c TOP INSTITUTE FOOD AND NUTRITION   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACILLUS SUBTILIS; CHROMOSOME MAP; COMPUTER INTERFACE; COMPUTER PROGRAM; COMPUTER SYSTEM; DNA DETERMINATION; DNA MICROARRAY; DNA STRUCTURE; ESCHERICHIA COLI K 12; GENETIC TRANSCRIPTION; INTERNET; LACTOBACILLUS PLANTARUM; MICROBIAL GENETICS; NONHUMAN; PRIORITY JOURNAL;

EID: 1842821076     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth159     Document Type: Article

References (8)

1. Bateman,A., Birney,E., Cerruti,L., Durbin,R., Etwiller,L., Eddy,S.R., Griffiths-Jones,S., Howe,K.L., Marshall,M. and Sonnhammer,E.L. (2002) The Pfam protein families database. Nucleic Acids Res., 30, 276-280.
2. Ermolaeva,M.D., Khalak,H.G., White,O., Smith,H.O. and Salzberg,S.L. (2000) Prediction of transcription terminators in bacterial genomes. J. Mol. Biol., 301, 27-33.
3. Gibson,G. and Smith,D.R., (2003) Genome visualization made fast and simple. Bioinformatics, 19, 1339-1450.
4. Kleerebezem,M., Boekhorst,J., van Kranenburg,R., Molenaar,D., Kuipers,O.P., Leer,R., Tarchini,R., Peters,S.A., Sandbrink,H.M., Fiers,M.W. et al. (2003) Complete genome sequence of Lactobacillus plantarum WCFS1. Proc. Natl Acad. Sci., USA, 100, 1990-1995.
5. Pedersen,A.G., Jensen,L.J., Brunak,S., Staerfeldt,H.H. and Ussery,D.W. (2000) A DNA structural atlas for Escherichia coli. J. Mol. Biol., 299, 907-930.
6. Sato,N. and Ehira,S. (2003) GenoMap, a circular genome data viewer. Bioinformatics, 19, 1583-1584.
7. Tatusov,R.L., Natale,D.A., Garkavtsev,I.V., Tatusova,T.A., Shankavaram,U.T., Rao,B.S., Kiryutin,B., Galperin,M.Y., Fedorova,N.D. and Koonin,E.V. (2001) The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res., 1, 22-28.
8. Yoshida,K., Kobayashi,K., Miwa,Y., Kang,C.M., Matsunaga,M., Yamaguchi,H., Tojo,S., Yamamoto,M., Nishi,R., Ogasawara,N., Nakayama,T. and Fujita,Y. (2001) Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Res., 29, 683-692.