Evolutionary forces shaping the Golgi glycosylation machinery: Why cell surface glycans are universal to living cells

Cold Spring Harbor Perspectives in Biology

Volumn 3, Issue 6, 2011, Pages 1-14

  Varki, Ajit ^a  

^a University of California San Diego   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA;

POLYSACCHARIDE;

ANIMAL; CHEMISTRY; EUKARYOTIC CELL; GLYCOSYLATION; GOLGI COMPLEX; METABOLISM; MOLECULAR EVOLUTION; PHYSIOLOGY; REVIEW; SPECIES DIFFERENCE; TRANSPORT AT THE CELLULAR LEVEL;

ANIMALS; BIOLOGICAL TRANSPORT; EUKARYOTIC CELLS; EVOLUTION, MOLECULAR; GLYCOSYLATION; GOLGI APPARATUS; POLYSACCHARIDES; SPECIES SPECIFICITY;

EID: 84863860723     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a005462     Document Type: Article

References (72)

1. Alley WR, Novotny MV. 2010. Glycomic analysis of sialic acid linkages in glycans derived from blood serum glycoproteins. J Proteome Res 9: 3062-3072.
2. An HJ, Kronewitter SR, de Leoz ML, Lebrilla CB. 2009. Glycomics and disease markers. Curr Opin Chem Biol 5: 601-607.
3. Avise JC. 2010. Colloquium paper: footprints of nonsentient design inside the human genome. Proc Natl Acad Sci 107 Suppl 2: 8969-8976.
4. Banfield DK. 2011. Mechanisms of protein retention in the golgi. Cold Spring Harb Perspect Biol doi:10.1101/cshperspect.a005264.
5. Baumann H, Gauldie J. 1994. The acute phase response. Immunol Today 15: 74-80.
6. Bishop JR, Gagneux P. 2007. Evolution of carbohydrate antigens-microbial forces shaping host glycomes? Glycobiology 17: 23R-34R.
7. Brockhausen I, Schachter H, Stanley P. 2009. O-GalNAc glycans. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 115-128. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
8. Caffaro CE, Hirschberg CB. 2006. Nucleotide sugar transporters of the golgi apparatus: from basic science to diseases. Acc Chem Res 39: 805-812.
9. Cohen M, Varki A. 2010. The sialome-far more than the sum of its parts. OMICS 14: 455-464.
10. Cohen M, Hurtado-Ziola N, Varki A. 2009. ABO blood group glycans modulate sialic acid recognition on erythrocytes. Blood 114: 3668-3676.
11. Coyne MJ, Reinap B, Lee MM, Comstock LE. 2005. Human symbionts use a host-like pathway for surface fucosylation. Science 307: 1778-1781.
12. Crick F. 1970. Central dogma of molecular biology. Nature 227: 561-563.
13. Dennis JW, Nabi IR, Demetriou M. 2009. Metabolism, cell surface organization, and disease. Cell 139: 1229-1241.
14. Drickamer K, Taylor ME. 1998. Evolving views of protein glycosylation. Trends Biochem Sci 23: 321-324.
15. Emr S, Glick BS, Linstedt AD, Lippincott-Schwartz J, Luini A, Malhotra V, Marsh BJ, Nakano A, Pfeffer SR, Rabouille C, et al. 2009. Journeys through the Golgi-taking stock in a new era. J Cell Biol 187: 449-453.
16. Esko JD, Sharon N. 2009. Microbial Lectins: Hemagglutinins, Adhesins, and Toxins. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 489-500. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
17. Esko JD, Kimata K, Lindahl U. 2009. Proteoglycans and sulfated glycosaminoglycans. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 229-248. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
18. Etzler ME, Mohnen D. 2009. Viridiplantae. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 321-332. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
19. Fadda E, Woods RJ. 2010. Molecular simulations of carbohydrates and protein-carbohydrate interactions: motivation, issues and prospects. Drug Discov Today 15: 596-609.
20. Ferguson MAJ, Kinoshita aT, HartGW. 2009. Glycosylphosphatidylinositol Anchors. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 143-162. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
21. Freeze HH, Vacquier VD, Esko JD. 2009. Deuterostomes. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 363-373. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
22. Freeze HH, Elbein AD. 2009. Glycosylation precursors. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 363-373. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
23. Freeze HH, Haltiwanger RS. 2009. Other classes of ER/Golgi-derived glycans. In Essentials of Glycobiology (eds. Varki A., Cummings R.D., Esko J.D., Freeze H.H., Stanley P., Bertozzi C.R., Hart G.W., Etzler M.E.), pp. 363-373. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
24. Freeze HH, Ng BG. 2011. Golgi glycosylation and human inherited diseases. Cold Spring Harb Perspect Biol doi:10.1101/cshperspect.a005371.
25. Gagneux P, Varki A. 1999. Evolutionary considerations in relating oligosaccharide diversity to biological function. Glycobiology 9: 747-755.
26. Galili U. 2005. The α-gal epitope and the anti-Gal antibody in xenotransplantation and in cancer immunotherapy. Immunol Cell Biol 83: 674-686.
27. Glick BS, Luini A. 2011. Models for golgi traffic: a critical assessment. Cold Spring Harb Perspect Biol doi:10.1101/cshperspect.a005215.
28. Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, et al. 2010. Visualization of omics data for systems biology. Nat Methods 7: S56-68.
29. Gomord V, Fitchette AC, Menu-Bouaouiche L, Saint-Jore-Dupas C, Plasson C, Michaud D, Faye L. 2010. Plantspecific glycosylation patterns in the context of therapeutic protein production. Plant Biotechnol J 8: 564-587.
30. Harduin-Lepers A, Mollicone R, Delannoy P, Oriol R. 2005. The animal sialyltransferases and sialyltransferaserelated genes: a phylogenetic approach. Glycobiology 15: 805-817.
31. Harvey HA, Swords WE, Apicella MA. 2001. The mimicry of human glycolipids and glycosphingolipids by the lipooligosaccharides of pathogenic neisseria and haemophilus. J Autoimmun 16: 257-262.
32. Hascall V, Esko JD. 2009. Hyaluronan. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 219-228. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
33. Hedrick SM. 2004. The acquired immune system: a vantage from beneath. Immunity 21: 607-615.
34. Henrissat B, Surolia A, Stanley P. 2009. A Genomic View of Glycobiology. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 89-100. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
35. Hooker AD, Goldman MH, Markham NH, James DC, Ison AP, Bull AT, Strange PG, Salmon I, Baines AJ, Jenkins N. 1995. N-glycans of recombinant human interferon-g change during batch culture of Chinese hamster ovary cells. Biotechnol Bioeng 48: 639-648.
36. Ilver D, Johansson P, Miller-Podraza H, Nyholm PG, Teneberg S, Karlsson KA. 2003. Bacterium-host protein-carbohydrate interactions. Methods Enzymol 363: 134-157.
37. Klute MJ, Melancon P, Dacks JB. 2011. Evolution and diversity of the golgi apparatus. Cold Spring Harb Perspect Biol doi:10.1101/cshperspect.a007849.
38. Lewis AL, Desa N, Hansen EE, Knirel YA, Gordon JI, Gagneux P, Nizet V, Varki A. 2009. Innovations in host and microbial sialic acid biosynthesis revealed by phylogenomic prediction of nonulosonic acid structure. Proc Natl Acad Sci 106: 13552-13557.
39. Linehan SA, Martínez-Pomares L, Gordon S. 2000. Macrophage lectins in host defence. Microbe Infect 2: 279-288.
40. Milland J, Sandrin MS. 2006. ABO blood group and related antigens, natural antibodies and transplantation. Tissue Antigens 68: 459-466.
41. Nilsson T, Au CE, Bergeron JJ. 2009. Sorting out glycosylation enzymes in the Golgi apparatus. FEBS Lett 583: 3764-3769.
42. North SJ, Hitchen PG, Haslam SM, Dell A. 2009. Mass spectrometry in the analysis of N-linked and O-linked glycans. Curr Opin Struct Biol 19: 498-506.
43. Ofek I, Sharon N. 1990. Adhesins as lectins: Specificity and role in infection. Curr Top Microbiol Immunol 151: 91-114.
44. Poppe L, van HH. 1991. Nuclear magnetic resonance of hydroxyl and amido protons of oligosaccharides in aqueous solution: Evidence for a strong intramolecular hydrogen bond in sialic acid residues. J Am Chem Soc 113: 363-365.
45. Rivinoja A, Hassinen A, Kokkonen N, Kauppila A, Kellokumpu S. 2009. Elevated Golgi pH impairs terminal N-glycosylation by inducing mislocalization of Golgi glycosyltransferases. J Cell Physiol 220: 144-154.
46. Schnaar RL, Suzuki A, Stanley P. 2009. Glycosphingolipids. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 129-142. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
47. Shevchenko A, Simons K. 2010. Lipidomics: coming to grips with lipid diversity. Nat Rev Mol Cell Biol 11: 593-598.
48. Stanley P, Cummings RD. 2009. Structures Common to Different Glycans. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 175-198. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
49. Stanley P, Schachter H, Taniguchi N. 2009. N-Glycans. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 101-114. Cold SpringHarbor Laboratory Press, Cold Spring Harbor, NY.
50. Stanley P. 2011. Golgi glycosylation. Cold Spring Harb Perspect Biol doi:10.1101/cshperspect.a005199.
51. TakeuchiO, Akira S. 2010. Pattern recognition receptors and inflammation. Cell 140: 805-820.
52. Tsai CM. 2001. Molecular mimicry of host structures by lipooligosaccharides of Neisseria meningitidis: characterization of sialylated and nonsialylated lacto-N-neotetraose (Galβ1-4GlcNAcβ1-3Galβ1-4Glc) structures in lipooligosaccharides using monoclonal antibodies and specific lectins. Adv Exp Med Biol 491: 525-542.
53. Tu L, Banfield DK. 2010. Localization of Golgi-resident glycosyltransferases. Cell Mol Life Sci 67: 29-41.
54. van den Berg BM, Vink H, Spaan JA. 2003. The endothelial glycocalyx protects against myocardial edema. Circ Res 92: 592-594.
55. Van Valen L. 1974. Two modes of evolution. Nature 252: 298-300.
56. Varki A. 1993. Biological roles of oligosaccharides: All of the theories are correct. Glycobiology 3: 97-130.
57. Varki A. 2006. Nothing in glycobiology makes sense, except in the light of evolution. Cell 126: 841-845.
58. Varki A. 2010. Colloquium paper: uniquely human evolution of sialic acid genetics and biology. Proc Natl Acad Sci 107 Suppl 2: 8939-8946.
59. Varki A, Lowe JB. 2009. Biological Roles of Glycans. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 75-88. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
60. Varki A, Schauer R. 2009. Sialic Acids. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 199-218. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
61. Varki A, Sharon N. 2009. Historical Background and Overview. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 1-22. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
62. Varki A, Esko JD, Colley KJ. 2009a. Cellular Organization of Glycosylation. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 37-46. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
63. Varki A, Freeze HH, Gagneux P. 2009b. Evolution of Glycan Diversity. In Essentials of Glycobiology (eds. A. Varki, R.D. Cummings, J.D. Esko, H.H. Freeze, P. Stanley, C.R. Bertozzi, G.W. Hart, M.E. Etzler), pp. 281-292. Cold SpringHarbor Laboratory Press, Cold SpringHarbor, NY.
64. Vinayavekhin N, Homan EA, Saghatelian A. 2010. Exploring disease through metabolomics. ACS Chem Biol 5: 91-103.
65. Voynow JA, Gendler SJ, Rose MC. 2006. Regulation of mucin genes in chronic inflammatory airway diseases. Am J Respir Cell Mol Biol 34: 661-665.
66. Wallace DC. 2010. Colloquium paper: bioenergetics, the origins of complexity, and the ascent of man. Proc Natl Acad Sci 107 Suppl 2: 8947-8953.
67. Wessels MR, Rubens CE, Benedí V-J, Kasper DL. 1989. Definition of a bacterial virulence factor: Sialylation of the group B streptococcal capsule. Proc Natl Acad Sci 86: 8983-8987.
68. Wilusz JE, Sunwoo H, Spector DL. 2009. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev 23: 1494-1504.
69. Woods RJ, Tessier MB. 2010. Computational glycoscience: characterizing the spatial and temporal properties of glycans and glycan-protein complexes. Curr Opin Struct Biol 5: 575-583.
70. Xu YX, Liu L, Caffaro CE, Hirschberg CB. 2010. Inhibition of Golgi apparatus glycosylation causes endoplasmic reticulum stress and decreased protein synthesis. J Biol Chem 285: 24600-24608.
71. Yates JR, Ruse CI, Nakorchevsky A. 2009. Proteomics by mass spectrometry: approaches, advances, and applications. Annu Rev Biomed Eng 11: 49-79.
72. Yuki N, Susuki K, Koga M, Nishimoto Y, Odaka M, Hirata K, Taguchi K, Miyatake T, Furukawa K, Kobata T, et al. 2004. Carbohydrate mimicry between human ganglioside GM1 and Campylobacter jejuni lipooligosaccharide causes Guillain-Barre syndrome. Proc Natl Acad Sci 101: 11404-11409.