Imprinting analysis of porcine DIO3 gene in two fetal stages and association analysis with carcass and meat quality traits

Molecular Biology Reports

Volumn 39, Issue 3, 2012, Pages 2329-2335

  Qiao, Mu ^b   Wu, Hua Yu ^b   Guo, Ling ^a   Mei, Shu Qi ^b   Zhang, Peng Peng ^a   Li, Feng E ^a   Zheng, Rong ^a   Deng, Chang Yan ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

Association analysis; DIO3; Imprinting; Porcine fetus; Real time PCR

Indexed keywords

AMINO ACID; IODIDE PEROXIDASE; MESSENGER RNA;

ALLELE; ANIMAL GENETICS; ANIMAL TISSUE; ARTICLE; BREED; CARCASS; DEVELOPMENTAL STAGE; DIO3 GENE; EMBRYO; EMBRYONAL TISSUE; EXON; FETUS; GENE; GENE EXPRESSION PROFILING; GENE FREQUENCY; GENE LOCATION; GENETIC ASSOCIATION; GENOME IMPRINTING; HEART; KIDNEY; LIPID STORAGE; LIVER; MEAT; MORPHOLOGICAL TRAIT; MUSCLE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRENATAL DEVELOPMENT; RNA SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; SMALL INTESTINE; STOMACH; SWINE; UTERUS;

ANIMALS; BODY COMPOSITION; CLONING, MOLECULAR; DNA PRIMERS; FETUS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE FREQUENCY; GENETIC ASSOCIATION STUDIES; GENOMIC IMPRINTING; IODIDE PEROXIDASE; LINEAR MODELS; MEAT; POLYMORPHISM, SINGLE NUCLEOTIDE; REAL-TIME POLYMERASE CHAIN REACTION; SUS SCROFA; THYROID HORMONES;

MAMMALIA; SUIDAE; SUS;

EID: 84863854975     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-011-0983-z     Document Type: Article

References (41)

1. Germain D, Galton V (1997) The deiodinase family of selenoproteins. Thyroid 7(4):655-668
2. Bianco AC, Salvatore D, Gereben B, Berry MJ, Larsen PR (2002) Biochemistry, cellular and molecular biology, and physiological roles of the iodothyronine selenodeiodinases. Endocr Rev 23(1):38-89
3. Bates J, St Germain D, Galton V (1999) Expression profiles of the three iodothyronine deiodinases, D1, D2, and D3, in the developing rat. Endocrinology 140(2):844-851
4. Galton V, Martinez E, Hernandez A, Germain E, Bates J, Germain D (1999) Pregnant rat uterus expresses high levels of the type 3 iodothyronine deiodinase. J Clin Invest 103(7):979-987
5. Koopdonk-Kool J, De Vijlder J, Veenboer G, Ris-Stalpers C, Kok J, Vulsma T, Boer K, Visser T (1996) Type II and type III deiodinase activity in human placenta as a function of gestational age. J Clin Endocrinol Metab 81(6):2154-2158
6. Roti E, Braverman L, Fang S, Alex S, Emerson C (1982) Ontogenesis of placental inner ring thyroxine deiodinase and amniotic fluid 3, 30, 50-triiodothyronine concentration in the rat. Endocrinology 111(3):959-963
7. Huang S, Dorfman D, Genest D, Salvatore D, Larsen P (2003) Type 3 iodothyronine deiodinase is highly expressed in the human uteroplacental unit and in fetal epithelium. J Clin Endocrinol Metab 88(3):1384-1388
8. Kaplan M, Yaskoski K (1980) Phenolic and tyrosyl ring deiodination of iodothyronines in rat brain homogenates. J Clin Invest 66(3):551-552
9. Hernandez A, Park J, Lyon G, Mohandas T, Germain D (1998) Localization of the type 3 iodothyronine deiodinase (DIO3) gene to human chromosome 14q32 and mouse chromosome 12F1. Genomics 53(1):119-121
10. Tsai C, Lin S, Ito M, Takagi N, Takada S, Ferguson-Smith A (2002) Genomic imprinting contributes to thyroid hormone metabolism in the mouse embryo. Curr Biol 12(14):1221-1226
11. Hernandez A, Fiering S, Martinez E, Galton V, St Germain D (2002) The gene locus encoding iodothyronine deiodinase type 3 (Dio3) is imprinted in the fetus and expresses antisense transcripts. Endocrinology 143(11):4483-4486
12. Reik W, Walter J (2001) Genomic imprinting: parental influence on the genome. Nat Rev Genet 2(1):21-32
13. De Koning D, Rattink A, Harlizius B, Van Arendonk J, Brascamp E, Groenen M (2000) Genome-wide scan for body composition in pigs reveals important role of imprinting. Proc Natl Acad Sci USA 97(14):7947-7950
14. Murphy S, Wylie A, Jirtle R (2001) Imprinting of PEG3, the human homologue of a mouse gene involved in nurturing behavior. Genomics 71(1):110-117
15. Sato S, Atsuji K, Saito N, Okitsu M, Komatsuda A, Mitsuhashi T, Nirasawa K, Hayashi T, Sugimoto Y, Kobayashi E (2006) Identification of quantitative trait loci affecting corpora lutea and number of teats in a Meishan 9 Duroc F2 resource population. J Anim Sci 84(11):2895-2901
16. Xu Z, Yang H, Xiong Y, Deng C, Li F, Lei M, Zuo B (2010) Identification of three novel SNPs and association with carcass traits in porcine TNNI1 and TNNI2. Mol Biol Rep 37:3609-3613
17. Xu Y, Yu W, Xiong Y, Xie H, Ren Z, Xu D, Lei M, Zuo B, Feng X (2010) Molecular characterization and expression patterns of serine/arginine-rich specific kinase 3 (SPRK3) in porcine skeletal muscle. Mol Biol Rep. doi:10.1007/s11033-010-9952-1
18. Qiao M, Wu H, Li F, Jiang S, Xiong Y, Deng C (2010) Molecular characterization, expression profile and association analysis with carcass traits of porcine LCAT gene. Mol Biol Rep 37:2227-2234
19. Xiong Y, Deng C (1999) Principle and method of swine testing. Chinese Agricultural Press, Beijing
20. Liu B (1998) Statistical genomics: linkage, mapping, and QTL analysis. CRC, Boca Ratton, pp 404-409
21. Lan J, Lei M, Zhang Y, Wang J, Feng X, Xu D, Gui J, Xiong Y (2009) Characterization of the porcine differentially expressed PDK4 gene and association with meat quality. Mol Biol Rep 36(7):2003-2010
22. Pan G, Fu Y, Zuo B, Ren Z, Xu D, Lei M, Zheng R, Xiong Y (2010) Molecular characterization, expression profile and association analysis with fat deposition traits of the porcine APOM gene. Mol Biol Rep 37(3):1363-1371
23. Cheng H, Zhang F, Jiang C, Li F, Xiong Y, Deng C (2008) Isolation and imprinting analysis of the porcine DLX5 gene and its association with carcass traits. Anim Genet 39(4):395-399
24. Hernandez A, Lyon G, Schneider M, St Germain D (1999) Isolation and characterization of the mouse gene for the type 3 iodothyronine deiodinase. Endocrinology 140(1):124-130
25. Kohrle J (2002) Iodothyronine deiodinases. Methods Enzymol 347:125-167
26. Kuiper G, Klootwijk W, Visser T (2002) Substitution of cysteine for a conserved alanine residue in the catalytic center of type II iodothyronine deiodinase alters interaction with reducing cofactor. Endocrinology 143(4):1190-1198
27. Kuiper G, Klootwijk W, Visser T (2003) Substitution of cysteine for selenocysteine in the catalytic center of type III iodothyronine deiodinase reduces catalytic efficiency and alters substrate preference. Endocrinology 144(6):2505-2513
28. Salvatore D, Low S, Berry M, Maia A, Harney J, Croteau W, St Germain D, Larsen P (1995) Type 3 lodothyronine deiodinase: cloning, in vitro expression, and functional analysis of the placental selenoenzyme. J Clin Invest 96(5):2421-2430
29. Richard K, Hume R, Kaptein E, Sanders J, van Toor H, de Herder W, den Hollander J, Krenning E, Visser T (1998) Ontogeny of iodothyronine deiodinases in human liver. J Clin Endocrinol Metab 83(8):2868-2874
30. Hernandez A, Garcia B, Obregon M (2007) Gene expression from the imprinted Dio3 locus is associated with cell proliferation of cultured brown adipocytes. Endocrinology 148(8):3968-3976
31. Schmidt J, Matteson P, Jones B, Guan X, Tilghman S (2000) The Dlk1 and Gtl2 genes are linked and reciprocally imprinted. Genes Dev 14(16):1997-2002
32. Wylie A, Murphy S, Orton T, Jirtle R (2000) Novel imprinted DLK1/GTL2 domain on human chromosome 14 contains motifs that mimic those implicated in IGF2/H19 regulation. Genome Res 10(11):1711-1718
33. Rocha S, Edwards C, Ito M, Ogata T, Ferguson-Smith A (2008) Genomic imprinting at the mammalian Dlk1-Dio3 domain. Trends Genet 24(6):306-316
34. Charalambous M, da Rocha S, Ferguson-Smith A (2007) Genomic imprinting, growth control and the allocation of nutritional resources: consequences for postnatal life. Curr Opin Endocrinol Diabetes Obes 14(1):3-12
35. Wilkinson L, Davies W, Isles A (2007) Genomic imprinting effects on brain development and function. Nat Rev Neurosci 8(11):832-843
36. Xiaoling J, Xiaofeng Z, Xiaoling G, Ninging X (2010) Mapping of porcine DIO3 gene and analysis of its potential influence on production traits. Chinese Acta Veterinaria et Zootechnica Sinica 41(4):383-386
37. Wimmers K, Fiedler I, Hardge T, Murani E, Schellander K, Ponsuksili S (2006) QTL for microstructural and biophysical muscle properties and body composition in pigs. BMC Genet 7(1):15
38. Rattink A, De Koning D, Faivre M, Harlizius B, van Arendonk J, Groenen M (2000) Fine mapping and imprinting analysis for fatness trait QTLs in pigs. Mammal Genome 11(8):656-661
39. Sanchez M, Riquet J, Iannuccelli N, Gogue J, Billon Y, Demeure O, Caritez J, Burgaud G, Feve K, Bonnet M (2006) Effects of quantitative trait loci on chromosomes 1, 2, 4, and 7 on growth, carcass, and meat quality traits in backcross Meishan 9 Large White pigs. J Anim Sci 84(3):526-537
40. Edwards D, Ernst C, Tempelman R, Rosa G, Raney N, Hoge M, Bates R (2008) Quantitative trait loci mapping in an F2 Duroc 9 Pietrain resource population: I. Growth Traits J Anim Sci 86:241-253
41. Desautes C, Bidanel J, Milan D, Iannuccelli N, Amigues Y, Bourgeois F, Caritez J, Renard C, Chevalet C, Mormede P (2002) Genetic linkage mapping of quantitative trait loci for behavioral and neuroendocrine stress response traits in pigs. J Anim Sci 80(9):2276-2285