Identification of three novel SNPs and association with carcass traits in porcine TNNI1 and TNNI2

Molecular Biology Reports

Volumn 37, Issue 7, 2010, Pages 3609-3613

  Xu, Z Y ^a   Yang, H ^a   Xiong, Y Z ^a   Deng, C Y ^a   Li, F E ^a   Lei, M G ^a   Zuo, B ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Carcass trait; Pig; SNP; TNNI1; TNNI2

Indexed keywords

TROPONIN I; TROPONIN I SKELETAL FAST TWITCH; TROPONIN I SKELETAL SLOW TWITCH; UNCLASSIFIED DRUG;

ARTICLE; BODY FAT DISTRIBUTION; CARCASS; CONTROLLED STUDY; DNA SEQUENCE; GENE FREQUENCY; GENETIC ANALYSIS; GENETIC IDENTIFICATION; GENETIC LINKAGE; GENETIC TRAIT; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SWINE;

ANIMALS; BREEDING; GENE FREQUENCY; GENOTYPE; MEAT; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT, HERITABLE; SUS SCROFA; TROPONIN I;

PIERIS BRASSICAE; SUIDAE; SUS;

EID: 77956972803     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0010-9     Document Type: Article

References (23)

1. G Pan YY Fu B Zuo ZQ Ren DQ Xu MG Lei R Zheng YZ Xiong 2010 Molecular characterization, expression profile and association analysis with fat deposition traits of the porcine APOM gene Mol Biol Rep 37 1363 1371 1:CAS:528:DC%2BC3cXhtlajt7g%3D 10.1007/s11033-009-9518-2 19326253
2. He XP, Gao H, Liu C, Fan B, Liu B (2010) Cloning, chromosomal localization, expression profile and association analysis of the porcine WNT10B gene with backfat thickness. Mol Biol Rep. doi: 10.1007/s11033-010-9978-4
3. HF Qiu XW Xu B Fan MF Rothschild Y Martin B Liu 2010 Investigation of LDHA and COPB1 as candidate genes for muscle development in the MYOD1 region of pig chromosome 2 Mol Biol Rep 37 629 636 1:CAS:528:DC%2BC3cXisFSntg%3D%3D 10.1007/s11033-009-9882-y 19830590
4. Qiao M, Wu HY, Li FE, Jiang SW, Xiong YZ, Deng CY (2009) Molecular characterization, expression profile and association analysis with carcass traits of porcine LCAT gene. Mol Biol Rep. doi: 10.1007/s11033-009-9709-x
5. L Fontanesi E Scotti L Buttazzoni S Dall'Olio R Davoli V Russo 2010 A single nucleotide polymorphism in the porcine cathepsin K (CTSK) gene is associated with back fat thickness and production traits in Italian Duroc pigs Mol Biol Rep 37 491 495 1:CAS:528:DC%2BC3cXisFWitQ%3D%3D 10.1007/s11033-009- 9678-0 19662513
6. XW Xu HF Qiu ZQ Du B Fan MF Rothschild F Yuan B Liu 2010 Porcine CSRP3: polymorphism and association analyses with meat quality traits and comparative analyses with CSRP1 and CSRP2 Mol Biol Rep 37 451 459 1:CAS:528: DC%2BC3cXisFSnsA%3D%3D 10.1007/s11033-009-9632-1 19634002
7. ZY Xu YZ Xiong MG Lei FE Li B Zuo 2009 Genetic polymorphisms and preliminary association analysis with production traits of the porcine SLC27A4 gene Mol Biol Rep 36 1427 1432 1:CAS:528:DC%2BD1MXmtlOntrw%3D 10.1007/s11033-008-9332-2 18696256
8. CA Maltin CC Warkup KR Matthews CM Grant AD Porter MI Delday 1997 Pig muscle fiber characteristics as a source of variation in eating quality Meat Sci 47 237 248 10.1016/S0309-1740(97)00055-7
9. G Reiner L Heinricy E Müller H Geldermann V Dzapo 2002 Indications of associations of the porcine FOS proto-oncogene with skeletal muscle fibre traits Anim Genet 33 49 55 1:CAS:528:DC%2BD38XhsFShsbg%3D 10.1046/j.1365-2052. 2002.00805.x 11849137
10. S Fonseca IJ Wilsons GW Horgan CA Maltin 2003 Slow fiber cluster pattern in pig longissimus thoracis muscle: implications for myogenesis J Anim Sci 81 973 983 1:CAS:528:DC%2BD3sXjtFCmtr8%3D 12723087
11. JM Wilkinson RJA Grand 1978 Comparison of amino acid sequence of troponin I from different striated muscles Nature 271 31 35 1:CAS:528:DyaE1cXktlyhtbk%3D 10.1038/271031a0 146828
12. SJ Corin O Juhasz L Zhu P Conley L Kedes R Wade 1994 Structure and expression of the human slow twitch skeletal muscle troponin I gene J Biol Chem 269 10651 10659 1:CAS:528:DyaK2cXkt1ygtbw%3D 8144655
13. S Banerjee-Basu A Buonanno 1994 Isolation and structure of the rat gene encoding troponin Islow Gene 145 241 244 1:CAS:528:DyaK2cXlsFShtLc%3D 10.1016/0378-1119(94)90013-2 8056338
14. PK Bhavsar NJ Brand MH Yacoub PJR Barton 1996 Isolation and characterisation of the human cardiac troponin I gene (TNNI3) Genomics 35 11 23 1:CAS:528:DyaK28Xkt12qsrk%3D 10.1006/geno.1996.0317 8661099
15. JL Guenet D Simon-Chazottes M Gravel KE Hasting S Schiaffino 1996 Cardiac and skeletal muscle troponin I isoforms are encoded by dispersed gene family on mouse chromosomes 1 and 7 Mamm Genome 7 13 15 1:CAS:528:DyaK28XhsFWnt7Y%3D 10.1007/s003359900004 8903721
16. AM Murphy WR Thompson LF Peng IIL Jones 1997 Regulation of the rat cardiac troponin I gene by the transcription factor GATA-4 Biochem J 322 393 401 1:CAS:528:DyaK2sXhvFahtLk%3D 9065755
17. AJ Mullen PJ Barton 2000 Structural characterization of the human fast skeletal muscle troponin I gene (TNNI2) Gene 242 313 320 1:CAS:528: DC%2BD3cXhsFCjtbk%3D 10.1016/S0378-1119(99)00519-3 10721725
18. H Yang ZY Xu ZX Ma YZ Xiong CY Deng B Zuo 2010 Molecular cloning and comparative characterization of the porcine troponin I family Anim Biotechnol 21 64 76 1:CAS:528:DC%2BD1MXhsFOnsLzE 10.1080/10495390903385983 20024788
19. Xiong YZ, Deng CY (1999) Principle and method of swine testing. Chinese Agricultural Press, Beijing
20. Liu BH (1998) Statistical genomics: linkage, mapping, and QTL analysis. CRC Press, LLC, Boca Raton, pp 404-409
21. Y Benjamini Y Hochberg 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing J R Stat Soc B 57 289 300
22. AS Van Laere M Nguyen M Braunschweig C Nezer C Collette L Moreau AL Archibald CS Haley N Buys M Tally G Andersson M Georges L Andersson 2003 A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig Nature 425 832 836 10.1038/nature02064 14574411
23. BJ Jungerius AS van Laere MF Te Pas BA van Oost L Andersson MA Groenen 2004 The IGF2-intron3-G3072A substitution explains a major imprinted QTL effect on backfat thickness in a Meishan × European white pig intercross Genet Res 84 95 101 1:CAS:528:DC%2BD2cXhtVaisL%2FO 10.1017/S0016672304007098 15678747