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Volumn 39, Issue 5, 2012, Pages 5905-5912

Characterization of reference genes for quantitative real-time PCR analysis in various tissues of anoectochilus roxburghii

Author keywords

Anoectochilus roxburghii; Gene expression; Internal control gene; Quantitative real time PCR; Squalene synthase

Indexed keywords

BETA TUBULIN; ELONGATION FACTOR 1ALPHA; ELONGATION FACTOR 1BETA; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; RNA 18S; SQUALENE SYNTHASE; UBIQUITIN;

EID: 84863759896     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-011-1402-1     Document Type: Article
Times cited : (28)

References (40)
  • 1
    • 57749113093 scopus 로고    scopus 로고
    • Towards a systematic validation of references in real-time RT-PCR
    • Gutierrez L (2008) Towards a systematic validation of references in real-time RT-PCR. Plant Cell 20:1734-1735
    • (2008) Plant Cell , vol.20 , pp. 1734-1735
    • Gutierrez, L.1
  • 2
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • Bustin SA (2002) Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol 29:23-39
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 3
    • 79151485799 scopus 로고    scopus 로고
    • Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves
    • Hacquard S, Veneault-Fourrey C, Delaruelle C, Frey P, Martin F, Duplessis S (2011) Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves. Physiol Mol Plant Pathol 75:106-112
    • (2011) Physiol Mol Plant Pathol , vol.75 , pp. 106-112
    • Hacquard, S.1    Veneault-Fourrey, C.2    Delaruelle, C.3    Frey, P.4    Martin, F.5    Duplessis, S.6
  • 4
    • 3242732345 scopus 로고    scopus 로고
    • Real-time PCR what relevance to plant studies?
    • Gachon C, Mingam A, Charrier B (2004) Real-time PCR: what relevance to plant studies? J Exp Bot 55:1445-1454
    • (2004) J Exp Bot , vol.55 , pp. 1445-1454
    • Gachon, C.1    Mingam, A.2    Charrier, B.3
  • 5
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible W (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139:5-17
    • (2005) Plant Physiol , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.5
  • 6
    • 61849089336 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
    • Lovdal T, Lillo C (2009) Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress. Anal Biochem 387:238-242
    • (2009) Anal Biochem , vol.387 , pp. 238-242
    • Lovdal, T.1    Lillo, C.2
  • 7
    • 67650930085 scopus 로고    scopus 로고
    • Normalization of qRT-PCR data: The necessity of adopting a systematic, experimental conditions specific, validation of references
    • Guenin S, Mauriat M, Pelloux J, Wuytswinkel OV, Bellini C, Gutierrez L (2009) Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions specific, validation of references. J Exp Bot 60:487-493
    • (2009) J Exp Bot , vol.60 , pp. 487-493
    • Guenin, S.1    Mauriat, M.2    Pelloux, J.3    Wuytswinkel, O.V.4    Bellini, C.5    Gutierrez, L.6
  • 8
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 3(7):0034.1-0034.11
    • (2002) Genome Biol , vol.3 , Issue.7 , pp. 00341-003411
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 9
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A modelbased variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen CL, Jensen JL, orntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a modelbased variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64:5245-5250
    • (2004) Cancer Res , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 10
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based using pair-wise correlations
    • Pfaffl MW, Tichopad A, Prgomet C (2004) Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based using pair-wise correlations. Biotechnol Lett 26:509-515
    • (2004) Biotechnol Lett , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3
  • 11
    • 77950476641 scopus 로고    scopus 로고
    • Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida
    • Mallona I, Lischewski S, Weiss J (2010) Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida. BMC Plant Biol 10:4
    • (2010) BMC Plant Biol , vol.10 , pp. 4
    • Mallona, I.1    Lischewski, S.2    Weiss, J.3
  • 13
    • 42149171231 scopus 로고    scopus 로고
    • Expression profiling and validation of potential reference genes during Paralichthys olivaceus embryogenesis
    • Zhong Q, Zhang Q, Wang Z, Qi J, Chen Y, Li S, Sun Y, Li C, Lan X (2008) Expression profiling and validation of potential reference genes during Paralichthys olivaceus embryogenesis. Mar Biotechnol 10:310-318
    • (2008) Mar Biotechnol , vol.10 , pp. 310-318
    • Zhong, Q.1    Zhang, Q.2    Wang, Z.3    Qi, J.4    Chen, Y.5    Li, S.6    Sun, Y.7    Li, C.8    Lan, X.9
  • 14
    • 80052431558 scopus 로고    scopus 로고
    • Evaluation of endogenous reference genes for analysis of gene expression with real-time RT-PCR during planarian regeneration
    • Yuwen Y, Dong Z, Wang Q, Sun X, Shi C, Chen G (2011) Evaluation of endogenous reference genes for analysis of gene expression with real-time RT-PCR during planarian regeneration. Mol Biol Rep 38(7):16-21
    • (2011) Mol Biol Rep , vol.38 , Issue.7 , pp. 16-21
    • Yuwen, Y.1    Dong, Z.2    Wang, Q.3    Sun, X.4    Shi, C.5    Chen, G.6
  • 15
    • 33646854724 scopus 로고    scopus 로고
    • Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
    • Jain M, Nijhawan A, Tyagi AK, Khurana JP (2006) Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem Biophys Res Commun 345:646-651
    • (2006) Biochem Biophys Res Commun , vol.345 , pp. 646-651
    • Jain, M.1    Nijhawan, A.2    Tyagi, A.K.3    Khurana, J.P.4
  • 16
    • 47149104723 scopus 로고    scopus 로고
    • Validation of internal control for gene expression study in soybean by quantitative real-time PCR
    • Jian B, Liu B, Bi Y, Hou W, Wu C, Han T (2008) Validation of internal control for gene expression study in soybean by quantitative real-time PCR. BMC Mol Biol 9:59
    • (2008) BMC Mol Biol , vol.9 , pp. 59
    • Jian, B.1    Liu, B.2    Bi, Y.3    Hou, W.4    Wu, C.5    Han, T.6
  • 18
    • 35148841561 scopus 로고    scopus 로고
    • Antihyperglycemic activity of kinsenoside, a high yielding constituent from Anoectochilus roxburghii in streptozotocin diabetic rats
    • Zhang Y, Cai J, Ruan H, Pi H, Wu J (2007) Antihyperglycemic activity of kinsenoside, a high yielding constituent from Anoectochilus roxburghii in streptozotocin diabetic rats. J Ethnopharmacol 14(2):141-145
    • (2007) J Ethnopharmacol , vol.14 , Issue.2 , pp. 141-145
    • Zhang, Y.1    Cai, J.2    Ruan, H.3    Pi, H.4    Wu, J.5
  • 19
    • 33646675072 scopus 로고    scopus 로고
    • A novel flavonoid glucoside from Anoectochilus roxberghii (Wall.) Lindl
    • He C, Wang C, Guo S, Yang J, Xiao P (2006) A novel flavonoid glucoside from Anoectochilus roxberghii (Wall.) Lindl. J Integr Plant Biol 48(3):359-363
    • (2006) J Integr Plant Biol , vol.48 , Issue.3 , pp. 359-363
    • He, C.1    Wang, C.2    Guo, S.3    Yang, J.4    Xiao, P.5
  • 20
    • 0035451363 scopus 로고    scopus 로고
    • Molecular mechanisms underling chemopreventive activities of anti-inflammatory phytochemicals: Down-regulation of COX-2 and iNOS through suppression of NF-jB activation
    • Surh YJ, Chus KS, Cha HH, Han SS, Keum YS, Park KK, Lee SS (2001) Molecular mechanisms underling chemopreventive activities of anti-inflammatory phytochemicals: down-regulation of COX-2 and iNOS through suppression of NF-jB activation. Mutat Res 480-481:243-268
    • (2001) Mutat Res , vol.480-481 , pp. 243-268
    • Surh, Y.J.1    Chus, K.S.2    Cha, H.H.3    Han, S.S.4    Keum, Y.S.5    Park, K.K.6    Lee, S.S.7
  • 21
    • 40549100383 scopus 로고    scopus 로고
    • Pharmacologically active compounds in the Anoectochilus and Goodyera species
    • Du XM, Irino N, Furusho N, Hayashi J, Shoyama Y (2008) Pharmacologically active compounds in the Anoectochilus and Goodyera species. J Nat Med 62:132-148
    • (2008) J Nat Med , vol.62 , pp. 132-148
    • Du, X.M.1    Irino, N.2    Furusho, N.3    Hayashi, J.4    Shoyama, Y.5
  • 23
    • 79955684092 scopus 로고    scopus 로고
    • Kinsenoside, a high yielding constituent from Anoectochilus formosanus, inhibits carbon tetrachloride induced Kupffer cells mediated liver damage
    • Hsieh WT, Tsai CT, Wu JB, Hsiao HB, Yang LC, Lin WC (2011) Kinsenoside, a high yielding constituent from Anoectochilus formosanus, inhibits carbon tetrachloride induced Kupffer cells mediated liver damage. J Ethnopharmacol 135(2):440-449
    • (2011) J Ethnopharmacol , vol.135 , Issue.2 , pp. 440-449
    • Hsieh, W.T.1    Tsai, C.T.2    Wu, J.B.3    Hsiao, H.B.4    Yang, L.C.5    Lin, W.C.6
  • 24
    • 64949150525 scopus 로고    scopus 로고
    • Molecular cloning, characterization and expression analysis of a new gene encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase from Salvia miltiorrhiza
    • Liao P, Zhou W, Zhang L, Wang J, Yan X, Zhang Y, Zhang R, Zhou G, Kai G (2009) Molecular cloning, characterization and expression analysis of a new gene encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase from Salvia miltiorrhiza. Acta Physiol Plant 31(3):565-572
    • (2009) Acta Physiol Plant , vol.31 , Issue.3 , pp. 565-572
    • Liao, P.1    Zhou, W.2    Zhang, L.3    Wang, J.4    Yan, X.5    Zhang, Y.6    Zhang, R.7    Zhou, G.8    Kai, G.9
  • 25
    • 70350733911 scopus 로고    scopus 로고
    • Molecular characterization of the Oncidium orchid HDR gene encoding 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, the last step of the methylerythritol phosphate pathway
    • Huang JZ, Cheng TC, Wen PJ, Hsieh MH, Chen FC (2009) Molecular characterization of the Oncidium orchid HDR gene encoding 1-hydroxy-2-methyl-2- (E)-butenyl 4-diphosphate reductase, the last step of the methylerythritol phosphate pathway. Plant Cell Rep 28(10):1475-1486
    • (2009) Plant Cell Rep , vol.28 , Issue.10 , pp. 1475-1486
    • Huang, J.Z.1    Cheng, T.C.2    Wen, P.J.3    Hsieh, M.H.4    Chen, F.C.5
  • 26
    • 22444436305 scopus 로고    scopus 로고
    • Identification and quantification of expression levels of three FRUITFULL-like MADS-box genes from the orchid Dendrobium thyrsiflorum (Reichb. f.)
    • Skipper M, Pedersen KB, Johansen LB, Frederiksen S, Irish VF, Johansen BB (2005) Identification and quantification of expression levels of three FRUITFULL-like MADS-box genes from the orchid Dendrobium thyrsiflorum (Reichb. f.). Plant Sci 169:579-586
    • (2005) Plant Sci , vol.169 , pp. 579-586
    • Skipper, M.1    Pedersen, K.B.2    Johansen, L.B.3    Frederiksen, S.4    Irish, V.F.5    Johansen, B.B.6
  • 27
    • 43149097164 scopus 로고    scopus 로고
    • Molecular cloning and characterization of wheat calreticulin (CRT) gene involved in drought-stressed responses
    • Jia XY, Xu CY, Jing RL, Li RZ, Mao XG, Wang JP, Chang XP (2008) Molecular cloning and characterization of wheat calreticulin (CRT) gene involved in drought-stressed responses. J Exp Bot 59(4):739-751
    • (2008) J Exp Bot , vol.59 , Issue.4 , pp. 739-751
    • Jia, X.Y.1    Xu, C.Y.2    Jing, R.L.3    Li, R.Z.4    Mao, X.G.5    Wang, J.P.6    Chang, X.P.7
  • 28
    • 56649124819 scopus 로고    scopus 로고
    • Identification and characterization of two chrysanthemum (Dendronthema 9 moriforlium) DREB genes, belonging to the AP2/EREBP family
    • Yang Y, Wu J, Zhu K, Liu L, Chen F, Yu D (2009) Identification and characterization of two chrysanthemum (Dendronthema 9 moriforlium) DREB genes, belonging to the AP2/EREBP family. Mol Biol Rep 36:71-81
    • (2009) Mol Biol Rep , vol.36 , pp. 71-81
    • Yang, Y.1    Wu, J.2    Zhu, K.3    Liu, L.4    Chen, F.5    Yu, D.6
  • 29
    • 33646948073 scopus 로고    scopus 로고
    • CDNA cloning and expression of anthocyanin biosynthetic genes in wild potato (Solanum pinnatisectum)
    • Lu Q, Yang Q (2006) cDNA cloning and expression of anthocyanin biosynthetic genes in wild potato (Solanum pinnatisectum). Afr J Biotechnol 5(10):811-818
    • (2006) Afr J Biotechnol , vol.5 , Issue.10 , pp. 811-818
    • Lu, Q.1    Yang, Q.2
  • 30
    • 17644375555 scopus 로고    scopus 로고
    • Osmotic sucrose enhancement of single-cell embryogenesis and transformation efficiency in Oncidium
    • Li SH, Kuoh CS, Chen YH, Chen HH, Chen WH (2005) Osmotic sucrose enhancement of single-cell embryogenesis and transformation efficiency in Oncidium. Plant Cell Tiss Org 81:183-192
    • (2005) Plant Cell Tiss Org , vol.81 , pp. 183-192
    • Li, S.H.1    Kuoh, C.S.2    Chen, Y.H.3    Chen, H.H.4    Chen, W.H.5
  • 31
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Bio 132:365-386
    • (2000) Methods Mol Bio , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 32
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29(9):e45
    • (2001) Nucleic Acids Res , vol.29 , Issue.9
    • Pfaffl, M.W.1
  • 33
    • 77949263647 scopus 로고    scopus 로고
    • Characterization of reference genes for quantitative real-time PCR analysis in various tissues of Salvia miltiorrhiza
    • Yang Y, Hou S, Cui G, Chen S, Wei J, Huang L (2010) Characterization of reference genes for quantitative real-time PCR analysis in various tissues of Salvia miltiorrhiza. Mol Biol Rep 37:507-513
    • (2010) Mol Biol Rep , vol.37 , pp. 507-513
    • Yang, Y.1    Hou, S.2    Cui, G.3    Chen, S.4    Wei, J.5    Huang, L.6
  • 34
    • 81355134083 scopus 로고    scopus 로고
    • Validation and application of reference genes for quantitative gene expression analyses in various tissues of Bupleurum chinense
    • Dong L, Sui C, Liu Y, Yang Y, Wei J, Yang Y (2011) Validation and application of reference genes for quantitative gene expression analyses in various tissues of Bupleurum chinense. Mol Biol Rep 38(8):5017-5023
    • (2011) Mol Biol Rep , vol.38 , Issue.8 , pp. 5017-5023
    • Dong, L.1    Sui, C.2    Liu, Y.3    Yang, Y.4    Wei, J.5    Yang, Y.6
  • 35
    • 84860322720 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative real-time RT-PCR analysis in citrus
    • doi:10.1007/s11033-011-0925-9
    • Yan J, Yuan F, Long G, Qin L, Deng Z (2011) Selection of reference genes for quantitative real-time RT-PCR analysis in citrus. Mol Biol Rep doi:10.1007/s11033-011-0925-9
    • Mol Biol Rep , vol.2011
    • Yan, J.1    Yuan, F.2    Long, G.3    Qin, L.4    Deng, Z.5
  • 36
    • 67349112357 scopus 로고    scopus 로고
    • A decade of improvements in quantification of gene expression and internal standard selection
    • Thellin O, ElMoualij B, Heinen E, Zorzi W (2009) A decade of improvements in quantification of gene expression and internal standard selection. Biotechnol Adv 27(4):323-333
    • (2009) Biotechnol Adv , vol.27 , Issue.4 , pp. 323-333
    • Thellin, O.1    Elmoualij, B.2    Heinen, E.3    Zorzi, W.4
  • 37
    • 8844275864 scopus 로고    scopus 로고
    • 26S rRNA-based internal control gene primer pair for reverse transcription-polymerase chain reactionbased quantitative expression studies in diverse plant species
    • Singh K, Raizada J, Bhardwaj P, Ghawana S, Rani A, Singh H, Kaul K, Kumar S (2004) 26S rRNA-based internal control gene primer pair for reverse transcription-polymerase chain reactionbased quantitative expression studies in diverse plant species. Anal Biochem 335:330-333
    • (2004) Anal Biochem , vol.335 , pp. 330-333
    • Singh, K.1    Raizada, J.2    Bhardwaj, P.3    Ghawana, S.4    Rani, A.5    Singh, H.6    Kaul, K.7    Kumar, S.8
  • 38
    • 4644290998 scopus 로고    scopus 로고
    • Enhanced triterpene and phytosterol biosynthesis in Panax ginseng overexpressing squalene synthase gene
    • Lee MH, Jeong JH, Seo JW, Shin CG, Kim YS, In JG, Yang DC, Yi JS, Choi YE (2004) Enhanced triterpene and phytosterol biosynthesis in Panax ginseng overexpressing squalene synthase gene. Plant Cell Physiol 45(8):976-984
    • (2004) Plant Cell Physiol , vol.45 , Issue.8 , pp. 976-984
    • Lee, M.H.1    Jeong, J.H.2    Seo, J.W.3    Shin, C.G.4    Kim, Y.S.5
  • 39
    • 79251523542 scopus 로고    scopus 로고
    • Expression and functional characterization of three squalene synthase genes associated with saponin biosynthesis in Panax ginseng
    • Kim TD, Han JY, Huh GH, Choi YE (2011) Expression and functional characterization of three squalene synthase genes associated with saponin biosynthesis in Panax ginseng. Plant Cell Physiol 52(1):125-137
    • (2011) Plant Cell Physiol , vol.52 , Issue.1 , pp. 125-137
    • Kim, T.D.1    Han, J.Y.2    Huh, G.H.3    Choi, Y.E.4
  • 40
    • 67349227971 scopus 로고    scopus 로고
    • Development of transgenic Artemisia annua (Chinese wormwood) plants with an enhanced content of artemisinin, an effective anti-malarial drug, by hairpin-RNA-mediated gene silencing
    • Zhang L, Jing F, Li F, Li M, Wang Y, Wang G, Sun X, Tang K (2009) Development of transgenic Artemisia annua (Chinese wormwood) plants with an enhanced content of artemisinin, an effective anti-malarial drug, by hairpin-RNA-mediated gene silencing. Biotechnol Appl Biochem 52:199-207
    • (2009) Biotechnol Appl Biochem , vol.52 , pp. 199-207
    • Zhang, L.1    Jing, F.2    Li, F.3    Li, M.4    Wang, Y.5    Wang, G.6    Sun, X.7    Tang, K.8


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