Cloning of a novel arylamidase gene from paracoccus sp. Strain FLN-7 that hydrolyzes amide pesticides

Applied and Environmental Microbiology

Volumn 78, Issue 14, 2012, Pages 4848-4855

  Zhang, Jun ^a,b   Yin, Jin Gang ^a   Hang, Bao Jian ^a   Cai, Shu ^a   He, Jian ^a   Zhou, Shun Gui ^b   Li, Shun Peng ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b GUANGDONG INSTITUTE OF ECO ENVIRONMENTAL AND SOIL SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDE BOND; AMIDE PESTICIDES; BACTERIAL ISOLATES; BIOCHEMICAL CHARACTERISTICS; CATALYTIC-KINETIC; COFACTORS; DIFLUBENZURON; DIMETHOATE; ENZYMATIC ACTIVITIES; HOMODIMERS; HYDROLYSIS ACTIVITY; ISO-ELECTRIC POINTS; NI-NITRILOTRIACETIC ACID; OPEN READING FRAME; PHYLOGENETIC TREES; PROPANIL; PROPHAM; SECONDARY AMINES;

AFFINITY CHROMATOGRAPHY; AMIDES; BIOREMEDIATION; ENCODING (SYMBOLS); ESCHERICHIA COLI; GENE ENCODING; HYDROLYSIS; PESTICIDES;

CLONING;

AMIDASE; AMIDE; BACTERIAL PROTEIN; DIFLUBENZURON; PESTICIDE; RECOMBINANT PROTEIN;

AMMONIUM COMPOUND; BACTERIUM; BIOCHEMISTRY; BIOREMEDIATION; CATALYSIS; CHEMICAL BONDING; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC ENGINEERING; HERBICIDE; HYDROLYSIS; PESTICIDE; PESTICIDE RESISTANCE; PH; PROTEIN; PURIFICATION; REACTION KINETICS;

ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; HYDROLYSIS; METABOLISM; METHODOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PARACOCCUS; PHYLOGENY;

AMIDES; AMIDOHYDROLASES; BACTERIAL PROTEINS; CLONING, MOLECULAR; DIFLUBENZURON; ESCHERICHIA COLI; HYDROLYSIS; MOLECULAR SEQUENCE DATA; PARACOCCUS; PESTICIDES; PHYLOGENY; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, DNA; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PARACOCCUS SP.;

EID: 84863731575     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00320-12     Document Type: Article

References (43)

1. Asano Y, Fukuta Y, Yoshida Y, Komeda H. 2008. The screening, characterization, and use of ω-laurolactam hydrolase: a new enzymatic synthesis of 12-aminolauric acid. Biosci. Biotechnol. Biochem. 72:2141-2150.
2. Bers K, et al. 2011. A novel linuron hydrolase identified by genomicproteomic analysis of phenylurea herbicide mineralization by Variovorax sp. strain SRS16. Appl. Environ. Microbiol. 77:8754-8764.
3. Boopathy R, Layer PG. 2004. Aryl acylamidase activity on acetylcholinesterase is high during early chicken brain development. Protein J. 23:325-333.
4. Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
5. Chauhan BS (ed). 2008. Enzymes and coenzymes, p 249. In Principles of biochemistry and biophysics. University Science Press, New Delhi, India.
6. Cuff JA, Clamp ME, Siddigni AS, Finlay M, Barton GJ. 1998. J Pred: a consensus secondary structure prediction server. Bioinformatics 14:892-893.
7. Denis H, Stephen C (ed). 2004. Pesticide residues in food and drinking & water: human exposure and risks. John Wiley & Sons Inc, New York, NY.
8. Frank DH, Peter G, Nico VS (ed). 2003. Pesticides: problems, improvements, alternatives. John Wiley & Sons Inc, New York, NY.
9. Fukuda K, Matsumoto T, Hagiwara K, Fujimoto Z, Mizuno H. 1997. Crystallization and preliminary X-ray diffraction studies of tulip aryl acylamidase: a key enzyme in plant herbicide detoxification. Acta Crystallogr. 53:342-344.
10. Fukuta Y, Koizumi S, Komeda H, Asano Y. 2010. A new aryl acylamidase from Rhodococcus sp. strain Oct1 acting on ω-lactams: its characterization and gene expression in Escherichia coli. Enzyme Microb. Technol. 46:237-245.
11. Hashimoto M, et al. 2006. Cloning and nucleotide sequence of carbaryl hydrolase gene (cahA) from Arthrobacter sp. RC100. J. Biosci. Bioeng. 101:410-414.
12. Hashimoto M, Fukui M, Hayano K, Hayatsu M. 2002. Nucleotide sequence and genetic structure of a novel carbaryl hydrolase gene (cehA) from Rhizobium sp. strain AC100. Appl. Environ. Microbiol. 68:1220-1227.
13. Holt JG, Krieg NR, Sneath PHA, Staley JT, Williams ST. 1994. Bergey's manual of determinative bacteriology, 9th ed. Williams & Wilkins Co, Baltimore, MD.
14. Horne I, Sutherland TD, Harcourt RL, Russell RJ, Oakeshott JG. 2002. Identification of an opd (organophosphate degradation) gene in an Agrobacterium isolate. Appl. Environ. Microbiol. 68:3371-3376.
15. Jiang H, et al. 2007. Cloning of a novel aldo-keto reductase gene from Klebsiella sp. strain F51-1-2 and its functional expression in Escherichia coli. Appl. Environ. Microbiol. 73:4959-4965.
16. Jun CJ, Matsunaka S. 1990. The propanil hydrolyzing enzyme aryl acylamidase in the wild rices of genus Oryza. Pestic. Biochem. Physiol. 38:26-33.
17. Kim BY, et al. 2006. Paracoccus homiensis sp. nov., isolated from a seasand sample. Int. J. Syst. Evol. Microbiol. 56:2387-2390.
18. Ko HJ, et al. 2010. Molecular characterization of a novel bacterial aryl acylamidase belonging to the amidase signature enzyme family. Mol. Cells 29:485-492.
19. Kolkenbrock S, Parschat K, Beermann B, Hinz HJ, Fetzner S. 2006. N-Acetylanthranilate amidase from Arthrobacter nitroguajacolicus Rü61a, an alpha/beta-hydrolase-fold protein active towards aryl-acylamides and -esters, and properties of its cysteine-deficient variant. J. Bacteriol. 188: 8430-8440.
20. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
21. Lavrov KV, Zalunin IA, Kotlova EK, Yanenko AS. 2010. A new acylamidase from Rhodococcus erythropolis TA37 can hydrolyze N-substituted amides. Biochemistry 75:1006-1013.
22. Li R, et al. 2010. Biochemical degradation pathway of dimethoate by Paracoccus sp. Lgjj-3 isolated from treatment wastewater. Int. Biodeter. Biodegr. 64:51-57.
23. Lyon BR, Llewellyn DJ, Huppatz JL, Dennis ES, Peacock WJ. 1989. Expression of a bacterial gene in transgenic tobacco plants confers resistance to the herbicide 2,4-dichlorophenoxyacetic acid. Plant Mol. Biol. 13:533-540.
24. Montenegro MF, et al. 2008. The level of aryl acylamidase activity displayed by human butyrylcholinesterase depends on its molecular distribution. Chem. Biol. Interact. 175:336-339.
25. Pandey G, et al. 2010. Cloning and biochemical characterization of a novel carbendazim (methyl-1H-benzimidazol-2-ylcarbamate)-hydrolyzing esterase from the newly isolated Nocardioides sp. strain SG-4G and its potential for use in enzymatic bioremediation. Appl. Environ. Microbiol. 76:2940-2945.
26. Pohlenz HD, Boidol W, Schüttke I, Streber WR. 1992. Purification and properties of an Arthrobacter oxydans P52 carbamate hydrolase specific for the herbicide phenmedipham and nucleotide sequence of the corresponding gene. J. Bacteriol. 174:6600-6607.
27. Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
28. Shen WL, et al. 2012. Cloning and characterization of a novel amidase from Paracoccus sp. M-1, showing aryl acylamidase and acyl transferase activities. Appl. Microbiol. Biotechnol. 94:1007-1018.
29. Stalker DM, McBride KE. 1987. Cloning and expression in Escherichia coli of a Klebsiella ozaenae plasmid-borne gene encoding a nitrilase specific for the herbicide bromoxynil. J. Bacteriol. 169:955-960.
30. Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
31. Tang HZ, et al. 2008. A novel gene encoding 6-hydroxy-3-succinoylpyridine hydroxylase in nicotine degradation by Pseudomonas putida strain S16. Appl. Environ. Microbiol. 74:1567-1574.
32. Tomasek PH, Karns JS. 1989. Cloning of a carbofuran hydrolase gene from Achromobacter sp. strain WM111 and its expression in gramnegative bacteria. J. Bacteriol. 171:4038-4044.
33. Tomlin CDS. 2007. The pesticide manual, 14th ed. British Crop Protection Council, Alton, Hampshire, United Kingdom
34. Turnbull GA, Ousley M, Walker A, Shaw E, Morgan JAW. 2001. Degradation of substituted phenylurea herbicides by Arthrobacter globiformis strain D47 and characterization of a plasmid-associated hydrolase gene, puhA. Appl. Environ. Microbiol. 67:2270-2275.
35. Wang BZ, et al. 2009. Cloning of a novel pyrethroid-hydrolyzing carboxylesterase gene from Sphingobium sp. strain JZ-1 and characterization of the gene product. Appl. Environ. Microbiol. 75:5496-5500.
36. Wang L, et al. 2005. Biodegradation of atrazine in transgenic plants expressing a modified bacterial atrazine chlorohydrolase (atzA) gene. Plant Biotechnol. J. 3:475-486.
37. Weatherburn MW. 1967. Phenol-hypochlorite reaction for determination of ammonia. Anal. Chem. 39:971-974.
38. White J, Chang SY, Bibb MJ. 1990. A cassette containing the bar gene of Streptomyces hygroscopicus: a selectable marker for plant transformation. Nucleic Acids Res. 18:1026.
39. Wittich RM, et al. 2007. Sphingobium aromaticiconvertens sp. nov., a xenobiotic-compound-degrading bacterium from polluted river sediment. Int. J. Syst. Evol. Microbiol. 57:306-310.
40. Yan DZ, Liu H, Zhou NY. 2006. Conversion of Sphingobium chlorophenolicum ATCC 39723 to a hexachlorobenzene degrader by metabolic engineering. Appl. Environ. Microbiol. 72:2283-2286.
41. Yasuhira K, et al. 2010. X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation. J. Biol. Chem. 285:1239-1248.
42. Zhang J, et al. 2011. Characterization of the propanil biodegradation pathway in Sphingomonas sp. Y57 and cloning of the propanil hydrolase gene prpH. J. Hazard. Mater. 196:412-419.
43. Zhang J, et al. 2011. Biodegradation of chloroacetamide herbicides by Paracoccus sp. FLY-8. J. Agric. Food Chem. 59:4614-4621.