Paracoccus homiensis sp. nov., isolated from a sea-sand sample

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 10, 2006, Pages 2387-2390

  Kim, Byung Yong ^a   Weon, Hang Yeon ^b   Yoo, Seung Hee ^a   Kwon, Soon Wo ^a   Cho, Yang Hee ^a   Stackebrandt, Erko ^c   Go, Seung Joo ^a  

^a National Institute of Agricultural Science   (South Korea)

^b National Institute of Animal Science   (South Korea)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; PYRIMIDINE NUCLEOTIDE; RNA 16S; SODIUM CHLORIDE; UBIQUINONE;

AEROBIC BACTERIUM; AGAR MEDIUM; ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM ISOLATION; CITY; CONTROLLED STUDY; DNA CONTENT; GENE SEQUENCE; GENOTYPE; GENUS; GRAM NEGATIVE BACTERIUM; INCUBATION TEMPERATURE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACOCCUS; PARACOCCUS HOMIENSIS; PARACOCCUS ZEAXANTHINIFACIENS; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RESPIRATORY CHAIN; SALINITY; SAND; SEQUENCE HOMOLOGY; SOUTH KOREA; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; GENOTYPE; KOREA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PARACOCCUS; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SILICON DIOXIDE; SOIL MICROBIOLOGY;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; PARACOCCUS (BACTERIUM); PARACOCCUS ZEAXANTHINIFACIENS;

EID: 33750020041     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64275-0     Document Type: Article

References (17)

1. Berry, A., Janssens, D., Hümbelin, M. & 10 other authors (2003). Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium. Int J Syst Evol Microbiol 53, 231-238.
2. Davis, D. H., Doudoroff, M., Stanier, R. Y. & Mandel, M. (1969). Proposal to reject the genus Hydrogenomonas: taxonomic implications. Int J Syst Bacteriol 19, 375-390.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
5. Kelly, D. P., Rainey, F. A. & Wood, A. P. (2000). The genus Paracoccus. In The Prokaryotes: an Evolving Electronic Resource for the Microbiological Community, 3rd edn. Edited by M. Dworkin, N. Falkow, H. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer-Verlag.
6. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
7. Kumar, S., Tamura, K., Jakobsen, I.-B. & Nei, M. (2001). MEGA: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
8. Kwon, S. W., Kim, J. S., Park, I. C., Yoon, S. H., Park, D. H., Lim, C. K. & Go, S. J. (2003). Pseudomonas koreensis sp. nov., Pseudomonas umsongensis sp. nov. and Pseudomonas jinjuensis sp. nov., novel species from farm soils in Korea. Int J Syst Evol Microbiol 53, 21-27.
9. Lee, J. H., Kim, Y. S., Choi, T.-J., Lee, W. J. & Kim, Y. T. (2004). Paracoccus haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-producing bacterium. Int J Syst Evol Microbiol 54, 1699-1702.
10. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
11. Pukall, R., Laroche, M., Kroppenstedt, R. M., Schumann, P., Stackebrandt, E. & Ulber, R. (2003). Paracoccus seriniphilus sp. nov., an L-serine-dehydratase-producing coccus isolated from the marine bryozoan Bugula plumosa. Int J Syst Evol Microbiol 53, 443-447.
12. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
13. Seldin, L. & Dubnau, D. (1985). Deoxyribonucleic acid homology among Bacillus polymyxa, Bacillus macerans, Bacillus azotofixans, and other nitrogen-fixing Bacillus strains. Int J Syst Bacteriol 35, 151-154.
14. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
15. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 168 rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
16. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
17. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.