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Volumn 26, Issue 16, 2012, Pages 1783-1792

The role of conformational flexibility in β2-microglobulin amyloid fibril formation at neutral pH

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DYNAMICS; ETHANOL; FINANCE; GLYCOPROTEINS; PH; SELF ASSEMBLY; SODIUM COMPOUNDS; SULFUR COMPOUNDS; UREA;

EID: 84863644568     PISSN: 09514198     EISSN: 10970231     Source Type: Journal    
DOI: 10.1002/rcm.6282     Document Type: Review
Times cited : (24)

References (52)
  • 1
    • 33746377894 scopus 로고    scopus 로고
    • Protein misfolding, functional amyloid, and human disease
    • F. Chiti, C. M. Dobson,. Protein misfolding, functional amyloid, and human disease. Annu. Rev. Biochem. 2006, 75, 333.
    • (2006) Annu. Rev. Biochem. , vol.75 , pp. 333
    • Chiti, F.1    Dobson, C.M.2
  • 2
    • 34547631623 scopus 로고    scopus 로고
    • Prevention of amyloid-like aggregation as a driving force of protein evolution
    • E. Monsellier, F. Chiti,. Prevention of amyloid-like aggregation as a driving force of protein evolution. EMBO Rep. 2007, 8, 737.
    • (2007) EMBO Rep. , vol.8 , pp. 737
    • Monsellier, E.1    Chiti, F.2
  • 3
    • 79959887638 scopus 로고    scopus 로고
    • A diversity of assembly mechanisms of a generic amyloid fold
    • T. Eichner, S. E. Radford,. A diversity of assembly mechanisms of a generic amyloid fold. Mol. Cell 2011, 43, 8.
    • (2011) Mol. Cell , vol.43 , pp. 8
    • Eichner, T.1    Radford, S.E.2
  • 4
    • 0028839438 scopus 로고
    • Comparison of lethal and nonlethal transthyretin variants and their relationship to amyloid disease
    • S. L. McCutchen, Z. Lai, G. J. Miroy, J. W. Kelly, W. Colon,. Comparison of lethal and nonlethal transthyretin variants and their relationship to amyloid disease. Biochemistry 1995, 34, 13527.
    • (1995) Biochemistry , vol.34 , pp. 13527
    • McCutchen, S.L.1    Lai, Z.2    Miroy, G.J.3    Kelly, J.W.4    Colon, W.5
  • 5
    • 21244468176 scopus 로고    scopus 로고
    • Lysozyme: A paradigmatic molecule for the investigation of protein structure, function and misfolding
    • G. Merlini, V. Bellotti,. Lysozyme: A paradigmatic molecule for the investigation of protein structure, function and misfolding. Clin. Chim. Acta 2005, 357, 168.
    • (2005) Clin. Chim. Acta , vol.357 , pp. 168
    • Merlini, G.1    Bellotti, V.2
  • 8
    • 27744437192 scopus 로고    scopus 로고
    • From chance to frequent encounters: Origins of beta2-microglobulin fibrillogenesis
    • C. M. Eakin, A. D. Miranker,. From chance to frequent encounters: Origins of beta2-microglobulin fibrillogenesis. Biochim. Biophys. Acta-Proteins and Proteomics 2005, 1753, 92.
    • (2005) Biochim. Biophys. Acta - Proteins and Proteomics , vol.1753 , pp. 92
    • Eakin, C.M.1    Miranker, A.D.2
  • 9
    • 68649108349 scopus 로고    scopus 로고
    • Glimpses of the molecular mechanisms of beta2-microglobulin fibril formation in vitro: Aggregation on a complex energy landscape
    • G. W. Platt, S. E. Radford,. Glimpses of the molecular mechanisms of beta2-microglobulin fibril formation in vitro: Aggregation on a complex energy landscape. FEBS Lett. 2009, 583, 2623.
    • (2009) FEBS Lett. , vol.583 , pp. 2623
    • Platt, G.W.1    Radford, S.E.2
  • 10
    • 0037162520 scopus 로고    scopus 로고
    • Crystal structure of monomeric human beta2-microglobulin reveals clues to its amyloidogenic properties
    • C. H. Trinh, D. P. Smith, A. P. Kalverda, S. E. V. Phillips, S. E. Radford,. Crystal structure of monomeric human beta2-microglobulin reveals clues to its amyloidogenic properties. Proc. Natl. Acad. Sci. USA 2002, 99, 9771.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9771
    • Trinh, C.H.1    Smith, D.P.2    Kalverda, A.P.3    Phillips, S.E.V.4    Radford, S.E.5
  • 12
    • 0025831493 scopus 로고
    • Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 Å resolution
    • M. A. Saper, P. J. Bjorkman, D. C. Wiley,. Refined structure of the human histocompatibility antigen HLA-A2 at 2.6 Å resolution. J. Mol. Biol. 1991, 219, 277.
    • (1991) J. Mol. Biol. , vol.219 , pp. 277
    • Saper, M.A.1    Bjorkman, P.J.2    Wiley, D.C.3
  • 13
    • 58249094358 scopus 로고    scopus 로고
    • HDX-ESI-MS reveals enhanced conformational dynamics of the amyloidogenic protein beta2-microglobulin upon release from the MHC-1
    • J. P. Hodkinson, T. R. Jahn, S. E. Radford, A. E. Ashcroft,. HDX-ESI-MS reveals enhanced conformational dynamics of the amyloidogenic protein beta2-microglobulin upon release from the MHC-1. J. Am. Soc. Mass Spectrom. 2009, 20, 278.
    • (2009) J. Am. Soc. Mass Spectrom. , vol.20 , pp. 278
    • Hodkinson, J.P.1    Jahn, T.R.2    Radford, S.E.3    Ashcroft, A.E.4
  • 15
    • 0035128916 scopus 로고    scopus 로고
    • Beta2-microglobulin-derived amyloidosis: An update
    • J. Floege, M. Ketteler,. Beta2-microglobulin-derived amyloidosis: an update. Kidney Int. 2001, 59, 164.
    • (2001) Kidney Int. , vol.59 , pp. 164
    • Floege, J.1    Ketteler, M.2
  • 16
    • 33144467755 scopus 로고    scopus 로고
    • Amyloid formation under physiological conditions proceeds via a native-like folding intermediate
    • T. R. Jahn, M. J. Parker, S. W. Homans, S. E. Radford,. Amyloid formation under physiological conditions proceeds via a native-like folding intermediate. Nat. Struct. Mol. Biol. 2006, 13, 195.
    • (2006) Nat. Struct. Mol. Biol. , vol.13 , pp. 195
    • Jahn, T.R.1    Parker, M.J.2    Homans, S.W.3    Radford, S.E.4
  • 17
    • 36348991325 scopus 로고    scopus 로고
    • Monitoring copopulated conformational states during protein folding events using electrospray ionization-ion mobility spectrometry-mass spectrometry
    • D. P. Smith, K. Giles, R. H. Bateman, S. E. Radford, A. E. Ashcroft,. Monitoring copopulated conformational states during protein folding events using electrospray ionization-ion mobility spectrometry-mass spectrometry. J. Am. Soc. Mass Spectrom. 2007, 18, 2180.
    • (2007) J. Am. Soc. Mass Spectrom. , vol.18 , pp. 2180
    • Smith, D.P.1    Giles, K.2    Bateman, R.H.3    Radford, S.E.4    Ashcroft, A.E.5
  • 19
    • 33144471714 scopus 로고    scopus 로고
    • A systematic study of the effect of physiological factors on beta2-microglobulin amyloid formation at neutral pH
    • S. L. Myers, S. Jones, T. R. Jahn, I. J. Morten, G. A. Tennent, E. W. Hewitt, S. E. Radford,. A systematic study of the effect of physiological factors on beta2-microglobulin amyloid formation at neutral pH. Biochemistry 2006, 45, 2311.
    • (2006) Biochemistry , vol.45 , pp. 2311
    • Myers, S.L.1    Jones, S.2    Jahn, T.R.3    Morten, I.J.4    Tennent, G.A.5    Hewitt, E.W.6    Radford, S.E.7
  • 20
    • 47749118352 scopus 로고    scopus 로고
    • A common beta-sheet architecture underlies in vitro and in vivo beta2-microglobulin amyloid fibrils
    • T. R. Jahn, G. A. Tennent, S. E. Radford,. A common beta-sheet architecture underlies in vitro and in vivo beta2-microglobulin amyloid fibrils. J. Biol. Chem. 2008, 283, 17279.
    • (2008) J. Biol. Chem. , vol.283 , pp. 17279
    • Jahn, T.R.1    Tennent, G.A.2    Radford, S.E.3
  • 21
    • 23444445907 scopus 로고    scopus 로고
    • Competing pathways determine fibril morphology in the self-assembly of beta2-microglobulin into amyloid
    • W. S. Gosal, I. J. Morten, E. W. Hewitt, D. A. Smith, N. H. Thomson, S. E. Radford,. Competing pathways determine fibril morphology in the self-assembly of beta2-microglobulin into amyloid. J. Mol. Biol. 2005, 351, 850.
    • (2005) J. Mol. Biol. , vol.351 , pp. 850
    • Gosal, W.S.1    Morten, I.J.2    Hewitt, E.W.3    Smith, D.A.4    Thomson, N.H.5    Radford, S.E.6
  • 22
    • 0000079910 scopus 로고    scopus 로고
    • Establishment of a kinetic model of dialysis-related amyloid fibril extension in vitro
    • H. Naiki, N. Hashimoto, S. Suzuki, H. Kimura, K. Nakakuki, F. Gejyo, Establishment of a kinetic model of dialysis-related amyloid fibril extension in vitro. Amyloid 1997, 4, 223.
    • (1997) Amyloid , vol.4 , pp. 223
    • Naiki, H.1    Hashimoto, N.2    Suzuki, S.3    Kimura, H.4    Nakakuki, K.5    Gejyo, F.6
  • 23
    • 33744918532 scopus 로고    scopus 로고
    • Interconverting conformations of variants of the human amyloidogenic protein beta2-microglobulin quantitatively characterized by dynamic capillary electrophoresis and computer simulation
    • N. H. Heegaard, T. J. Jorgensen, L. Cheng, C. Schou, M. H. Nissen, O. Trapp,. Interconverting conformations of variants of the human amyloidogenic protein beta2-microglobulin quantitatively characterized by dynamic capillary electrophoresis and computer simulation. Anal. Chem. 2006, 78, 3667.
    • (2006) Anal. Chem. , vol.78 , pp. 3667
    • Heegaard, N.H.1    Jorgensen, T.J.2    Cheng, L.3    Schou, C.4    Nissen, M.H.5    Trapp, O.6
  • 28
    • 0038575395 scopus 로고    scopus 로고
    • A systematic investigation into the effect of protein destabilisation on beta2-microglobulin amyloid formation
    • D. P. Smith, S. Jones, L. C. Serpell, M. Sunde, S. E. Radford,. A systematic investigation into the effect of protein destabilisation on beta2-microglobulin amyloid formation. J. Mol. Biol. 2003, 330, 943.
    • (2003) J. Mol. Biol. , vol.330 , pp. 943
    • Smith, D.P.1    Jones, S.2    Serpell, L.C.3    Sunde, M.4    Radford, S.E.5
  • 30
    • 48249092311 scopus 로고    scopus 로고
    • Systematic analysis of nucleation-dependent polymerisation reveals new insights into the mechansim of self-assembly
    • W. F. Xue, S. W. Homans, S. E. Radford,. Systematic analysis of nucleation-dependent polymerisation reveals new insights into the mechansim of self-assembly. Proc. Natl. Acad. Sci. USA 2008, 105, 8926.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , pp. 8926
    • Xue, W.F.1    Homans, S.W.2    Radford, S.E.3
  • 31
    • 13244258262 scopus 로고    scopus 로고
    • Mapping protein energy landscapes with amide hydrogen exchange and mass spectrometry: I. A generalized model for a two-state protein and comparison with experiment
    • H. Xiao, J. K. Hoerner, S. J. Eyles, A. Dobo, E. Voigtman, A. I. Mel'cuk, I. A. Kaltashov,. Mapping protein energy landscapes with amide hydrogen exchange and mass spectrometry: I. A generalized model for a two-state protein and comparison with experiment. Prot. Sci. 2005, 14, 543.
    • (2005) Prot. Sci. , vol.14 , pp. 543
    • Xiao, H.1    Hoerner, J.K.2    Eyles, S.J.3    Dobo, A.4    Voigtman, E.5    Mel'Cuk, A.I.6    Kaltashov, I.A.7
  • 32
    • 49549086897 scopus 로고    scopus 로고
    • Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches
    • L. Konermann, X. Tong, Y. Pan,. Protein structure and dynamics studied by mass spectrometry: H/D exchange, hydroxyl radical labeling, and related approaches. J. Mass Spectrom. 2008, 43, 1021.
    • (2008) J. Mass Spectrom. , vol.43 , pp. 1021
    • Konermann, L.1    Tong, X.2    Pan, Y.3
  • 33
    • 60949106895 scopus 로고    scopus 로고
    • A generic mechanism of beta2-microglobulin amyloid assembly at neutral pH involving a specific proline switch
    • T. Eichner, S. E. Radford,. A generic mechanism of beta2-microglobulin amyloid assembly at neutral pH involving a specific proline switch. J. Mol. Biol. 2009, 386, 1312.
    • (2009) J. Mol. Biol. , vol.386 , pp. 1312
    • Eichner, T.1    Radford, S.E.2
  • 37
    • 0038351889 scopus 로고    scopus 로고
    • Role of the N- and C-terminal strands of beta2-microglobulin in amyloid formation at neutral pH
    • S. Jones, D. P. Smith, S. E. Radford,. Role of the N- and C-terminal strands of beta2-microglobulin in amyloid formation at neutral pH. J. Mol. Biol. 2003, 330, 935.
    • (2003) J. Mol. Biol. , vol.330 , pp. 935
    • Jones, S.1    Smith, D.P.2    Radford, S.E.3
  • 38
    • 33847033822 scopus 로고    scopus 로고
    • Formation of a stable oligomer of beta2-microglobulin requires only transient encounter with Cu(II)
    • M. F. Calabrese, A. D. Miranker,. Formation of a stable oligomer of beta2-microglobulin requires only transient encounter with Cu(II). J. Mol. Biol. 2007, 367, 1.
    • (2007) J. Mol. Biol. , vol.367 , pp. 1
    • Calabrese, M.F.1    Miranker, A.D.2
  • 39
    • 0037183496 scopus 로고    scopus 로고
    • Formation of a copper specific binding site in non-native states of beta2-microglobulin
    • C. M. Eakin, J. D. Knight, C. J. Morgan, M. A. Gelfand, A. D. Miranker,. Formation of a copper specific binding site in non-native states of beta2-microglobulin. Biochemistry 2002, 41, 10646.
    • (2002) Biochemistry , vol.41 , pp. 10646
    • Eakin, C.M.1    Knight, J.D.2    Morgan, C.J.3    Gelfand, M.A.4    Miranker, A.D.5
  • 40
    • 0346103697 scopus 로고    scopus 로고
    • Glycosaminoglycans enhance the trifluoroethanol-induced extension of beta2-microglobulin-related amyloid fibrils at a neutral pH
    • S. Yamamoto, I. Yamaguchi, K. Hasegawa, S. Tsutsumi, Y. Goto, F. Gejyo, H. Naiki,. Glycosaminoglycans enhance the trifluoroethanol-induced extension of beta2-microglobulin-related amyloid fibrils at a neutral pH. J. Am. Soc. Nephrol. 2004, 15, 126.
    • (2004) J. Am. Soc. Nephrol. , vol.15 , pp. 126
    • Yamamoto, S.1    Yamaguchi, I.2    Hasegawa, K.3    Tsutsumi, S.4    Goto, Y.5    Gejyo, F.6    Naiki, H.7
  • 42
    • 79960550339 scopus 로고    scopus 로고
    • Characterization of beta2-microglobulin conformational intermediates associated to different fibrillation conditions
    • C. Santambrogio, S. Ricagno, F. Sobott, M. Colombo, M. Bolognesi, R. Grandori,. Characterization of beta2-microglobulin conformational intermediates associated to different fibrillation conditions. J. Mass Spectrom. 2011, 46, 734.
    • (2011) J. Mass Spectrom. , vol.46 , pp. 734
    • Santambrogio, C.1    Ricagno, S.2    Sobott, F.3    Colombo, M.4    Bolognesi, M.5    Grandori, R.6
  • 43
    • 0035980019 scopus 로고    scopus 로고
    • Conformational intermediate of the amyloidogenic protein beta2-microglobulin at neutral pH
    • N. H. Heegaard, J. W. Sen, N. C. Kaarsholm, M. H. Nissen,. Conformational intermediate of the amyloidogenic protein beta2-microglobulin at neutral pH. J. Biol. Chem. 2001, 276, 32657.
    • (2001) J. Biol. Chem. , vol.276 , pp. 32657
    • Heegaard, N.H.1    Sen, J.W.2    Kaarsholm, N.C.3    Nissen, M.H.4
  • 44
    • 4644335370 scopus 로고    scopus 로고
    • Low concentrations of sodium dodecyl sulfate induce the extension of beta2-microglobulin-related amyloid fibrils at a neutral pH
    • S. Yamamoto, K. Hasegawa, I. Yamaguchi, S. Tsutsumi, J. Kardos, Y. Goto, F. Gejyo, H. Naiki,. Low concentrations of sodium dodecyl sulfate induce the extension of beta2-microglobulin-related amyloid fibrils at a neutral pH. Biochemistry 2004, 43, 11075.
    • (2004) Biochemistry , vol.43 , pp. 11075
    • Yamamoto, S.1    Hasegawa, K.2    Yamaguchi, I.3    Tsutsumi, S.4    Kardos, J.5    Goto, Y.6    Gejyo, F.7    Naiki, H.8
  • 45
    • 35748930873 scopus 로고    scopus 로고
    • Simulations of macromolecules in protective and denaturing osmolytes: Properties of mixed solvent systems and their effects on water and protein structure and dynamics
    • D. A. Beck, B. J. Bennion, D. O. Alonso, V. Daggett,. Simulations of macromolecules in protective and denaturing osmolytes: Properties of mixed solvent systems and their effects on water and protein structure and dynamics. Methods Enzymol. 2007, 428, 373.
    • (2007) Methods Enzymol. , vol.428 , pp. 373
    • Beck, D.A.1    Bennion, B.J.2    Alonso, D.O.3    Daggett, V.4
  • 46
    • 77951669557 scopus 로고    scopus 로고
    • Chemistry of Hofmeister anions and osmolytes
    • Y. Zhang, P. S. Cremer,. Chemistry of Hofmeister anions and osmolytes. Ann. Rev. Phys. Chem. 2010, 61, 63.
    • (2010) Ann. Rev. Phys. Chem. , vol.61 , pp. 63
    • Zhang, Y.1    Cremer, P.S.2
  • 48
    • 11144221004 scopus 로고    scopus 로고
    • Amyloid accomplices and enforcers
    • A. T. Alexandrescu,. Amyloid accomplices and enforcers. Prot. Sci. 2005, 14, 1.
    • (2005) Prot. Sci. , vol.14 , pp. 1
    • Alexandrescu, A.T.1
  • 50
    • 33749326831 scopus 로고    scopus 로고
    • Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis
    • D. D. Weis, T. E. Wales, J. R. Engen, M. Hotchko, L. F. Ten Eyck,. Identification and characterization of EX1 kinetics in H/D exchange mass spectrometry by peak width analysis. J. Am. Soc. Mass Spectrom. 2006, 17, 1498.
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1498
    • Weis, D.D.1    Wales, T.E.2    Engen, J.R.3    Hotchko, M.4    Ten Eyck, L.F.5


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