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Volumn 7, Issue 7, 2012, Pages

Taxonomic and functional microbial signatures of the endemic marine sponge arenosclera brasiliensis

Author keywords

[No Author keywords available]

Indexed keywords

SEA WATER; BACTERIAL DNA;

EID: 84863611362     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0039905     Document Type: Article
Times cited : (49)

References (57)
  • 1
    • 59649113268 scopus 로고    scopus 로고
    • Fossil steroids record the appearance of Demospongiae during the Cryogenian period
    • Love GD, Grosjean E, Stalvies C, Fike DA, Grotzinger JP, et al. (2009) Fossil steroids record the appearance of Demospongiae during the Cryogenian period. Nature 457: 718-721.
    • (2009) Nature , vol.457 , pp. 718-721
    • Love, G.D.1    Grosjean, E.2    Stalvies, C.3    Fike, D.A.4    Grotzinger, J.P.5
  • 2
    • 34250733462 scopus 로고    scopus 로고
    • Sponge-associated microorganisms: evolution, ecology, and biotechnological potential
    • Taylor MW, Radax R, Steger D, Wagner M, (2007) Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol Rev 71: 295-347.
    • (2007) Microbiol Mol Biol Rev , vol.71 , pp. 295-347
    • Taylor, M.W.1    Radax, R.2    Steger, D.3    Wagner, M.4
  • 4
    • 84856583756 scopus 로고    scopus 로고
    • Marine sponges and their microbial symbionts: love and other relationships
    • Webster NS, Taylor MW, (2012) Marine sponges and their microbial symbionts: love and other relationships. Environmental Microbiology 14: 335-346.
    • (2012) Environmental Microbiology , vol.14 , pp. 335-346
    • Webster, N.S.1    Taylor, M.W.2
  • 5
    • 0016664580 scopus 로고
    • Etude en microscopie electronique de l'association entre bacteries et spongiaires du genre Verongia (Dictyoceratida)
    • Vacelet J, (1975) Etude en microscopie electronique de l'association entre bacteries et spongiaires du genre Verongia (Dictyoceratida). J Microsc Biol Cell 23: 271-288.
    • (1975) J Microsc Biol Cell , vol.23 , pp. 271-288
    • Vacelet, J.1
  • 6
    • 0000393614 scopus 로고
    • Electron-microscope study of association between some sponges and bacteria
    • Vacelet J, Donadey C, (1977) Electron-microscope study of association between some sponges and bacteria. J Exp Mar Biol Ecol 30: 301-314.
    • (1977) J Exp Mar Biol Ecol , vol.30 , pp. 301-314
    • Vacelet, J.1    Donadey, C.2
  • 9
    • 79953028506 scopus 로고    scopus 로고
    • Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea
    • Lee OO, Wang Y, Yang J, Lafi FF, Al-Suwailem A, et al. (2010) Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. The ISME Journal 5: 650-664.
    • (2010) The ISME Journal , vol.5 , pp. 650-664
    • Lee, O.O.1    Wang, Y.2    Yang, J.3    Lafi, F.F.4    Al-Suwailem, A.5
  • 10
    • 77955263252 scopus 로고    scopus 로고
    • Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts
    • Webster NS, Taylor MW, Behnam F, Lucker S, Rattei T, et al. (2010) Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts. Environ Microbiol 12: 2070-2082.
    • (2010) Environ Microbiol , vol.12 , pp. 2070-2082
    • Webster, N.S.1    Taylor, M.W.2    Behnam, F.3    Lucker, S.4    Rattei, T.5
  • 11
    • 84857121586 scopus 로고    scopus 로고
    • Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
    • Schmitt S, Tsai P, Bell J, Fromont J, Ilan M, et al. (2011) Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges. The ISME Journal 6: 564-576.
    • (2011) The ISME Journal , vol.6 , pp. 564-576
    • Schmitt, S.1    Tsai, P.2    Bell, J.3    Fromont, J.4    Ilan, M.5
  • 12
    • 84859156654 scopus 로고    scopus 로고
    • Deep sequencing reveals diversity and community structure of complex microbiota in five Mediterranean sponges
    • Schmitt S, Hentschel U, Taylor MW, (2011) Deep sequencing reveals diversity and community structure of complex microbiota in five Mediterranean sponges. Hydrobiologia 687: 341-351.
    • (2011) Hydrobiologia , vol.687 , pp. 341-351
    • Schmitt, S.1    Hentschel, U.2    Taylor, M.W.3
  • 13
    • 78649450996 scopus 로고    scopus 로고
    • Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
    • Thomas T, Rusch D, DeMaere MZ, Yung PY, Lewis M, et al. (2010) Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis. The ISME Journal 4: 1557-1567.
    • (2010) The ISME Journal , vol.4 , pp. 1557-1567
    • Thomas, T.1    Rusch, D.2    DeMaere, M.Z.3    Yung, P.Y.4    Lewis, M.5
  • 14
    • 48749101940 scopus 로고    scopus 로고
    • Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil
    • Turque AS, Cardoso AM, Silveira CB, Vieira RP, Freitas FAD, et al. (2008) Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil. Marine Biology 155: 135-146.
    • (2008) Marine Biology , vol.155 , pp. 135-146
    • Turque, A.S.1    Cardoso, A.M.2    Silveira, C.B.3    Vieira, R.P.4    Freitas, F.A.D.5
  • 17
    • 8144227070 scopus 로고    scopus 로고
    • Shallow-water Haplosclerida (Porifera, Demospongiae) from Rio de Janeiro State, Brazil (Southwestern Atlantic)
    • Muricy G, Ribeiro SM, (1999) Shallow-water Haplosclerida (Porifera, Demospongiae) from Rio de Janeiro State, Brazil (Southwestern Atlantic). Beaufortia 49: 83-108.
    • (1999) Beaufortia , vol.49 , pp. 83-108
    • Muricy, G.1    Ribeiro, S.M.2
  • 18
    • 0033855770 scopus 로고    scopus 로고
    • Arenosclerins A-C and haliclonacyclamine E, new tetracyclic alkaloids from a Brazilian endemic Haplosclerid sponge Arenosclera brasiliensis
    • Torres YR, Berlinck RG, Magalhaes A, Schefer AB, Ferreira AG, et al. (2000) Arenosclerins A-C and haliclonacyclamine E, new tetracyclic alkaloids from a Brazilian endemic Haplosclerid sponge Arenosclera brasiliensis. J Nat Prod 63: 1098-1105.
    • (2000) J Nat Prod , vol.63 , pp. 1098-1105
    • Torres, Y.R.1    Berlinck, R.G.2    Magalhaes, A.3    Schefer, A.B.4    Ferreira, A.G.5
  • 19
    • 0035998313 scopus 로고    scopus 로고
    • Antibacterial activity against resistant bacteria and cytotoxicity of four alkaloid toxins isolated from the marine sponge Arenosclera brasiliensis
    • Torres YR, Berlinck RG, Nascimento GG, Fortier SC, Pessoa C, et al. (2002) Antibacterial activity against resistant bacteria and cytotoxicity of four alkaloid toxins isolated from the marine sponge Arenosclera brasiliensis. Toxicon 40: 885-891.
    • (2002) Toxicon , vol.40 , pp. 885-891
    • Torres, Y.R.1    Berlinck, R.G.2    Nascimento, G.G.3    Fortier, S.C.4    Pessoa, C.5
  • 20
    • 55149085927 scopus 로고    scopus 로고
    • Genotoxic and antigenotoxic evaluation of extracts from Arenosclera brasiliensis, a Brazilian marine sponge
    • Stankevicins L, Aiub C, Maria LC, Lobo-Hajdu G, Felzenszwalb I, (2008) Genotoxic and antigenotoxic evaluation of extracts from Arenosclera brasiliensis, a Brazilian marine sponge. Toxicol In Vitro 22: 1869-1877.
    • (2008) Toxicol In Vitro , vol.22 , pp. 1869-1877
    • Stankevicins, L.1    Aiub, C.2    Maria, L.C.3    Lobo-Hajdu, G.4    Felzenszwalb, I.5
  • 21
    • 79251642713 scopus 로고    scopus 로고
    • Coastal bacterioplankton community diversity along a latitudinal gradient in Latin America by means of V6 tag pyrosequencing
    • Thompson FL, Bruce T, Gonzalez A, Cardoso A, Clementino M, et al. (2011) Coastal bacterioplankton community diversity along a latitudinal gradient in Latin America by means of V6 tag pyrosequencing. Archives of Microbiology 193: 105-114.
    • (2011) Archives of Microbiology , vol.193 , pp. 105-114
    • Thompson, F.L.1    Bruce, T.2    Gonzalez, A.3    Cardoso, A.4    Clementino, M.5
  • 22
    • 36749104453 scopus 로고    scopus 로고
    • Intragenomic, Intra- and Interspecific Variation inthe rDNA ITS of Porifera revealed by PCR-Single-Strand Conformation Polymorphism (PCR-SSCP)
    • Lôbo-Hajdu G, Guimarães ACR, Salgado A, Lamarão FRM, Vieiralves T, et al. (2004) Intragenomic, Intra- and Interspecific Variation inthe rDNA ITS of Porifera revealed by PCR-Single-Strand Conformation Polymorphism (PCR-SSCP). Boll Mus Ist Biol Univ Genova 68: 413-423.
    • (2004) Boll Mus Ist Biol Univ Genova , vol.68 , pp. 413-423
    • Lôbo-Hajdu, G.1    Guimarães, A.C.R.2    Salgado, A.3    Lamarão, F.R.M.4    Vieiralves, T.5
  • 23
    • 24044455869 scopus 로고    scopus 로고
    • Genome sequencing in microfabricated high-density picolitre reactors
    • Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
    • (2005) Nature , vol.437 , pp. 376-380
    • Margulies, M.1    Egholm, M.2    Altman, W.E.3    Attiya, S.4    Bader, J.S.5
  • 24
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, et al. (2008) The metagenomics RAST server- a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5
  • 25
    • 77951945504 scopus 로고    scopus 로고
    • Identifying biologically relevant differences between metagenomic communities
    • Parks DH, Beiko RG, (2010) Identifying biologically relevant differences between metagenomic communities. Bioinformatics 26: 715-721.
    • (2010) Bioinformatics , vol.26 , pp. 715-721
    • Parks, D.H.1    Beiko, R.G.2
  • 27
    • 77955490196 scopus 로고    scopus 로고
    • The Amphimedon queenslandica genome and the evolution of animal complexity
    • Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, et al. (2010) The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466: 720-U723.
    • (2010) Nature , vol.466 , pp. 720-723
    • Srivastava, M.1    Simakov, O.2    Chapman, J.3    Fahey, B.4    Gauthier, M.E.A.5
  • 29
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Stat Soc B 57: 289-300.
    • (1995) J Roy Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 30
    • 70349993601 scopus 로고    scopus 로고
    • ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes
    • Kristiansson E, Hugenholtz P, Dalevi D, (2009) ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes. Bioinformatics 25: 2737-2738.
    • (2009) Bioinformatics , vol.25 , pp. 2737-2738
    • Kristiansson, E.1    Hugenholtz, P.2    Dalevi, D.3
  • 31
    • 0036499057 scopus 로고    scopus 로고
    • SHOT: a web server for the construction of genome phylogenies
    • Korbel JO, Snel B, Huynen MA, Bork P, (2002) SHOT: a web server for the construction of genome phylogenies. Trends Genet 18: 158-162.
    • (2002) Trends Genet , vol.18 , pp. 158-162
    • Korbel, J.O.1    Snel, B.2    Huynen, M.A.3    Bork, P.4
  • 32
    • 2342492364 scopus 로고    scopus 로고
    • The Consistent Phylogenetic Signal in Genome Trees Revealed by Reducing the Impact of Noise
    • Dutilh BE, Huynen MA, Bruno WJ, Snel B, (2004) The Consistent Phylogenetic Signal in Genome Trees Revealed by Reducing the Impact of Noise. Journal of Molecular Evolution 58: 527-539.
    • (2004) Journal of Molecular Evolution , vol.58 , pp. 527-539
    • Dutilh, B.E.1    Huynen, M.A.2    Bruno, W.J.3    Snel, B.4
  • 34
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An Improved Version of the NJ Algorithm Based on a Simple Model of Sequence Data
    • Gascuel O, (1997) BIONJ: An Improved Version of the NJ Algorithm Based on a Simple Model of Sequence Data. Molecular Biology and Evolution 14: 685-695.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 35
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (Version 3.2)
    • Felsenstein J, (1989) PHYLIP- Phylogeny Inference Package (Version 3.2). Cladistics 5: 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 36
    • 0000792789 scopus 로고
    • Statistical distance and Hilbert space
    • Wootters KW, (1980) Statistical distance and Hilbert space. Physical Review D 23: 357-362.
    • (1980) Physical Review D , vol.23 , pp. 357-362
    • Wootters, K.W.1
  • 37
    • 73349122019 scopus 로고    scopus 로고
    • Biological Characterisation of Haliclona (?gellius) sp.: Sponge and Associated Microorganisms
    • Sipkema D, Holmes B, Nichols SA, Blanch HW, (2009) Biological Characterisation of Haliclona (?gellius) sp.: Sponge and Associated Microorganisms. Microbial Ecology 58: 903-920.
    • (2009) Microbial Ecology , vol.58 , pp. 903-920
    • Sipkema, D.1    Holmes, B.2    Nichols, S.A.3    Blanch, H.W.4
  • 38
    • 0041350484 scopus 로고    scopus 로고
    • Diversity and significance of Burkholderia species occupying diverse ecological niches
    • Coenye T, Vandamme P, (2003) Diversity and significance of Burkholderia species occupying diverse ecological niches. Environmental Microbiology 5: 719-729.
    • (2003) Environmental Microbiology , vol.5 , pp. 719-729
    • Coenye, T.1    Vandamme, P.2
  • 39
    • 78650771854 scopus 로고    scopus 로고
    • The various lifestyles of the Burkholderia cepacia complex species: a tribute to adaptation
    • Vial L, Chapalain A, Groleau M-C, Déziel E, (2011) The various lifestyles of the Burkholderia cepacia complex species: a tribute to adaptation. Environmental Microbiology 13: 1-12.
    • (2011) Environmental Microbiology , vol.13 , pp. 1-12
    • Vial, L.1    Chapalain, A.2    Groleau, M.-C.3    Déziel, E.4
  • 40
    • 53249143990 scopus 로고    scopus 로고
    • Degradation of dimethyl carboxylic phthalate ester by Burkholderia cepacia DA2 isolated from marine sediment of South China Sea
    • Wang Y, Yin B, Hong Y, Yan Y, Gu J-D, (2008) Degradation of dimethyl carboxylic phthalate ester by Burkholderia cepacia DA2 isolated from marine sediment of South China Sea. Ecotoxicology 17: 845-852.
    • (2008) Ecotoxicology , vol.17 , pp. 845-852
    • Wang, Y.1    Yin, B.2    Hong, Y.3    Yan, Y.4    Gu, J.-D.5
  • 42
    • 0037312887 scopus 로고    scopus 로고
    • Overrepresentation of a Gene Family Encoding Extracytoplasmic Solute Receptors in Bordetella
    • Antoine R, Jacob-Dubuisson F, Drobecq H, Willery E, Lesjean S, et al. (2003) Overrepresentation of a Gene Family Encoding Extracytoplasmic Solute Receptors in Bordetella. Journal of Bacteriology 185: 1470-1474.
    • (2003) Journal of Bacteriology , vol.185 , pp. 1470-1474
    • Antoine, R.1    Jacob-Dubuisson, F.2    Drobecq, H.3    Willery, E.4    Lesjean, S.5
  • 43
    • 23444461618 scopus 로고    scopus 로고
    • The Periplasmic Binding Protein of a Tripartite Tricarboxylate Transporter is Involved in Signal Transduction
    • Antoine R, Huvent I, Chemlal K, Deray I, Raze D, et al. (2005) The Periplasmic Binding Protein of a Tripartite Tricarboxylate Transporter is Involved in Signal Transduction. Journal of Molecular Biology 351: 799-809.
    • (2005) Journal of Molecular Biology , vol.351 , pp. 799-809
    • Antoine, R.1    Huvent, I.2    Chemlal, K.3    Deray, I.4    Raze, D.5
  • 45
    • 51649124894 scopus 로고    scopus 로고
    • The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
    • Pierce E, Xie G, Barabote RD, Saunders E, Han CS, et al. (2008) The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum). Environ Microbiol 10: 2550-2573.
    • (2008) Environ Microbiol , vol.10 , pp. 2550-2573
    • Pierce, E.1    Xie, G.2    Barabote, R.D.3    Saunders, E.4    Han, C.S.5
  • 46
    • 0036711479 scopus 로고    scopus 로고
    • Gene sequence and the 1.8 A crystal structure of the tungsten-containing formate dehydrogenase from Desulfovibrio gigas
    • Raaijmakers H, Macieira S, Dias JM, Teixeira S, Bursakov S, et al. (2002) Gene sequence and the 1.8 A crystal structure of the tungsten-containing formate dehydrogenase from Desulfovibrio gigas. Structure 10: 1261-1272.
    • (2002) Structure , vol.10 , pp. 1261-1272
    • Raaijmakers, H.1    Macieira, S.2    Dias, J.M.3    Teixeira, S.4    Bursakov, S.5
  • 47
    • 54949153045 scopus 로고    scopus 로고
    • Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation
    • Ragsdale SW, Pierce E, (2008) Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation. Biochim Biophys Acta 1784: 1873-1898.
    • (2008) Biochim Biophys Acta , vol.1784 , pp. 1873-1898
    • Ragsdale, S.W.1    Pierce, E.2
  • 51
    • 27144465524 scopus 로고    scopus 로고
    • Pathogenic fungus harbours endosymbiotic bacteria for toxin production
    • Partida-Martinez LP, Hertweck C, (2005) Pathogenic fungus harbours endosymbiotic bacteria for toxin production. Nature 437: 884-888.
    • (2005) Nature , vol.437 , pp. 884-888
    • Partida-Martinez, L.P.1    Hertweck, C.2
  • 52
    • 33846294808 scopus 로고    scopus 로고
    • A gene cluster encoding rhizoxin biosynthesis in "Burkholderia rhizoxina"
    • the bacterial endosymbiont of the fungus Rhizopus microsporus
    • Partida-Martinez LP, Hertweck C, (2007) A gene cluster encoding rhizoxin biosynthesis in "Burkholderia rhizoxina" Chembiochem 8: 41-45 the bacterial endosymbiont of the fungus Rhizopus microsporus.
    • (2007) Chembiochem , vol.8 , pp. 41-45
    • Partida-Martinez, L.P.1    Hertweck, C.2
  • 53
    • 38949203821 scopus 로고    scopus 로고
    • Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection
    • Nguyen T, Ishida K, Jenke-Kodama H, Dittmann E, Gurgui C, et al. (2008) Exploiting the mosaic structure of trans-acyltransferase polyketide synthases for natural product discovery and pathway dissection. Nat Biotechnol 26: 225-233.
    • (2008) Nat Biotechnol , vol.26 , pp. 225-233
    • Nguyen, T.1    Ishida, K.2    Jenke-Kodama, H.3    Dittmann, E.4    Gurgui, C.5
  • 54
    • 77949796393 scopus 로고    scopus 로고
    • Biosynthesis of the mitochondrial adenine nucleotide translocase (ATPase) inhibitor bongkrekic acid in Burkholderia gladioli
    • Rohm B, Scherlach K, Hertweck C, (2010) Biosynthesis of the mitochondrial adenine nucleotide translocase (ATPase) inhibitor bongkrekic acid in Burkholderia gladioli. Organic & Biomolecular Chemistry 8: 1520-1522.
    • (2010) Organic & Biomolecular Chemistry , vol.8 , pp. 1520-1522
    • Rohm, B.1    Scherlach, K.2    Hertweck, C.3
  • 55
    • 79957511827 scopus 로고    scopus 로고
    • Enacyloxins Are Products of an Unusual Hybrid Modular Polyketide Synthase Encoded by a Cryptic Burkholderia ambifaria Genomic Island
    • Mahenthiralingam E, Song L, Sass A, White J, Wilmot C, et al. (2011) Enacyloxins Are Products of an Unusual Hybrid Modular Polyketide Synthase Encoded by a Cryptic Burkholderia ambifaria Genomic Island. Chemistry & Biology 18: 665-677.
    • (2011) Chemistry & Biology , vol.18 , pp. 665-677
    • Mahenthiralingam, E.1    Song, L.2    Sass, A.3    White, J.4    Wilmot, C.5
  • 57
    • 33947177575 scopus 로고    scopus 로고
    • Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis
    • O'Sullivan LA, Weightman AJ, Jones TH, Marchbank AM, Tiedje JM, et al. (2007) Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. Environmental Microbiology 9: 1017-1034.
    • (2007) Environmental Microbiology , vol.9 , pp. 1017-1034
    • O'Sullivan, L.A.1    Weightman, A.J.2    Jones, T.H.3    Marchbank, A.M.4    Tiedje, J.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.