Phylogenetic placement of the ectomycorrhizal genus Cenococcum in Gloniaceae (Dothideomycetes)

Mycologia

Volumn 104, Issue 3, 2012, Pages 758-765

  Spatafora, Joseph W ^a   Owensby, C Alisha ^a   Douhan, Greg W ^b   Boehm, Eric W A ^c   Schoch, Conrad L ^d  

^a OREGON STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c KEAN UNIVERSITY   (United States)

^d NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

Cenococcum; Dothideomycetes; Ectomycorrhizae; Fungi; Gloniaceae; Phylogenetics; Systematics

Indexed keywords

FUNGAL DNA; RIBOSOME DNA;

ECTOMYCORRHIZA; EVOLUTIONARY BIOLOGY; FUNGUS; GEOGRAPHICAL DISTRIBUTION; HOST RANGE; IDENTIFICATION KEY; PHYLOGENETICS; TAXONOMY;

ARTICLE; ASCOMYCETES; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; FUNGAL GENE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; MYCORRHIZA; NUCLEOTIDE SEQUENCE; PHYLOGENY;

ASCOMYCOTA; BASE SEQUENCE; DNA, FUNGAL; DNA, RIBOSOMAL; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; MYCORRHIZAE; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

ASCOMYCOTA; CENOCOCCUM; DOTHIDEOMYCETES; FUNGI; GLONIUM;

EID: 84863534787     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-233     Document Type: Article

References (37)

1. Barr ME. 1987. Prodromus to class Loculoascomycetes. Amherst, Massachusetts: M.E. Barr Bigelow. 168 p.
2. Berbee ML. 1996. Loculoascomycete origins and evolution of filamentous ascomycete morphology from 18S rRNA gene sequence data. Mol Biol Evol 13:462-470.
3. Binder M, Hibbett DS. 2006. Molecular systematics and biological diversification of Boletales. Mycologia 98: 971-981.
4. Boehm EWA, Mugambi GK, Miller AN, Huhndorf SM, Marincowitz S, Spatafora JW, Schoch CL. 2009a. A molecular phylogenetic reappraisal of the Hysteriaceae, Mytilinidiaceae and Gloniaceae (Pleosporomycetidae, Dothideomycetes) with keys to world species. Stud Mycol 64:49-84.
5. Boehm EWA, Schoch CL, Spatafora JW. 2009b. On the evolution of the Hysteriaceae and Mytilinidiaceae (Pleosporomycetidae, Dothideomycetes, Ascomycota) using four nuclear genes. Mycol Res 113:461-479.
6. Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17:540-552.
7. Douhan GW, Rizzo DM. 2005. Phylogenetic divergence in a local population of the ectomycorrhizal fungus Cenococcum geophilum. New Phytol 166:263-271.
8. Douhan GW, Huryn KL, Douhan LI. 2007a. Significant diversity and potential problems associated with inferring population structure within the Cenococcum geophilum species complex. Mycologia 99:812-819.
9. Douhan GW, Martin DP, Rizzo DM. 2007b. Using the putative asexual fungus Cenococcum geophilum as a model to test how species concepts influence recombination analyses using sequence data from multiple loci. Cur Gen 52: 191-201.
10. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucl Acids Res 32:1792-1797.
11. Fernández-Toirán LM, Á gueda B. 2007. Fruit bodies of Cenococcum geophilum. Mycotaxon 100:109-114.
12. Geiser DM, Gueidan C, Miadlikowska J, Lutzoni F, Kauff F, Hofstetter V, Fraker E, Schoch CL, Tibell L, Untereiner WA, Aptroot A. 2006. Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae. Mycologia 98:1053- 1064.
13. Hansen K, Pfister DH. 2006. Systematics of the Pezizomycetes- the operculate discomycetes. Mycologia 98:1029-1040.
14. Hibbett DS, Binder M, Bischoff JF, Blackwell M, Cannon PF, Eriksson OE, Huhndorf S, James TY, Kirk PM, Lücking R, Lumbsch HT, Lutzoni F, Matheny PB, McLaughlin DJ, Powell MJ, Redhead S, Schoch CL, Spatafora JW, Stalpers JA, Vilgalys R, Aime MC, Aptroot A, Bauer R, Begerow D, Benny GL, Castlebury LA, Crous PW, Dai Y-C, Gams W, Geiser DM, Griffith GW, Gueidan C, Hawksworth DL, Hestmark G, Hosaka K, Humber RA, Hyde KD, Ironside JE, Koljag U, Kurtzman CP, Larsson K-H, Lichtwardt R, Longcore J, Miadlikowska J, Miller A, Moncalvo J-M, Mozley-Standridge S, Oberwinkler F, Parmasto E, Reeb V, Rogers JD, Roux C, Ryvarden L, Sampaio JP, Schußler A, Sugiyama J, Thorn RG, Tibell L, Untereiner WA, Walker C, Wang Z, Weir A, Weiss M, White MM, Winka K, Yao Y-J, Zhang N. 2007. A higherlevel phylogenetic classification of the Fungi. Mycol Res 111:509-547.
15. Jany JL, Garbaye J, Martin F. 2002. Cenococcum geophilum populations show a high degree of genetic diversity in beech forests. New Phytol 154:651-659.
16. Lilleskov EA, Bruns TD. 2005. Spore dispersal of a resupinate ectomycorrhizal fungus, Tomentella sublilacina, via soil food webs.Mycologia 97:762-769.
17. Liu YJ, Hall BD. 2004. Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny. Proc Natl Acad Sci USA 101:4507-4512.
18. LoBuglio KF. 1999. Ectomycorrhizal fungi: key genera in profile. Cairney JWG, Chambers SM, eds. Cenococcum. Berlin: Springer-Verlag. p 287-309.
19. LoBuglio KF. Berbee ML, Taylor JW. 1996. Phylogenetic origins of the asexual mycorrhizal symbiont Cenococcum geophilum Fr. and other mycorrhizal fungi among the ascomycetes. Mol Phylogen Evol 6:287-294.
20. LoBuglio KF, Taylor JW. 2002. Recombination and genetic differentiation in the mycorrhizal fungus Cenococcum geophilum Fr. Mycologia 94:772-280.
21. Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett DS, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch CL, Arnold AE, Miadlikowska J, Spatafora JW, Johnson D, Hambleton S, Crockett M, Shoemaker R, Sung G-H, Lücking R, Lumbsch T, O'Donnell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim Y-W, Matheny B, Nishida H, Pfister DH, Rogers J, Rossman AY, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr R, Vilgalys R. 2004. Assembling the fungal tree of life: progress, classification and evolution of subcellular traits. Am J Bot 91:1446-1480.
22. Massicotte HB, Trappe JM, Peterson RL, Melville LH. 1992. Studies on Cenococcum geophilum II. Sclerotium morphology, germination and formation in pure culture and growth pouches. Can J Bot 70:125-132.
23. Matheny PB, Wang Z, Binder M, Curtis JM, Lim YM, Nilsson RH, Hughes KW, Hofstetter V, Ammirati JF, Schoch CL, Langer GE, McLaughlin DJ, Wilson AW, Frøslev T, Ge ZW, Kerrigan RW, Slot JC, Vellinga EC, Liang ZL, Baroni TJ, Fischer M, Hosaka K, Matsuura K, Seidl MT, Vaura J, Hibbett DS. 2007. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol Phylogenet Evol 43:430- 451.
24. Nelsen MP, Lücking R, Grube M, Mbatchou JS, Muggia L, Rivas Plata E, Lumbsch HT. 2009. Unraveling the phylogenetic relationships of lichenised fungi in Dothideomyceta. Stud Mycol 64:135-144.
25. O'Gorman CM, FullerHT, Dyer PS. 2009. Discovery of a sexual cycle in the opportunistic fungal pathogen Aspergillus fumigatus.Nature 457:471-474.
26. Ruibal C, Gueidan C, Selbmann L, Gorbushina AA, Crous PW, Groenewald JZ, Muggia L, Grube M, Isola D, Schoch CL, Staley JT, Lutzoni F, de Hoog GS. 2009. Phylogeny of rock-inhabiting fungi related to Dothideomycetes. Stud Mycol 64:123-133.
27. Schoch CL, Shoemaker RA, Seifert KA, Hambleton S, Spatafora JW, Crous PW. 2006. A multigene phylogeny of the Dothideomycetes using four nuclear loci. Mycologia 64:1043-1054.
28. Schoch CL, Sung G-H, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Andrie R, Trippe K, Ciuffetti L, Amtoft A, Fraker E, Hodkinson BP, Bonito G, Lutzoni F, Groenewald JZ, Arzanlou M, de Hoog S, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh S-O, Blackwell M, Hillis DM, Griffith G, Castlebury L, Rossman A, Lumbsch HT, Lücking R, Diederich P, Ertz D, Geiser D, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O'Donnell K, Rogers J, Shoemaker R, Sugiyama J, Summerbell R, Untereiner W, Johnston P, Stenroos S, Zuccaro A, Dyer P, Crittenden P, Trappe JM, Spatafora JW. 2009a. The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst Biol 58:224-239.
29. Schoch CL, Crous PW, Groenewald JZ, Boehm EWA, Burgess TI, de Gruyter J, de Hoog GS, Dixon LJ, Grube M, Gueidan C, Harada Y, Hatakeyama S, Hirayama K, Hosoya T, Huhndorf SM, Hyde KD, Jones EBG, Kohlmeyer EBG, Kruys Å, Lücking R, Lumbsch HT, Marvanová L, Mbatchou JS, McVay AH, Miller AN, Mugambi GK, Muggia L, Nelsen MP, Nelson P, Owensby CA, Phillips AJL, Phongpaichit S, Pointing SB, Pujade-Renaud V, Raja HA, Rivas Plata E, Robbertse B, Ruibal C, Sakayaroj J, Sano T, Selbmann L, Shearer CA, Shirouzu T, Slippers B, Suetrong S, Tanaka K, Volkmann-Kohlmeyer B, Wingfield MJ, Wood AR, Woudenberg JHC, Yonezawa H, Zhang Y, Spatafora JW. 2009b. A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1-15.
30. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
31. Suetrong S, Schoch CL, Spatafora JW, Kohlmeyer J, Volkmann-Kohlmeyer B, Sakayaroj J, Phongpaichit S, Tanaka K, Hirayama K, Jones EBG. 2009. Molecular systematics of the marine Dothideomycetes. Stud Mycol 64:155-173.
32. Tedersoo L, May TW, Smith ME. 2010. Ectomycorrhizal lifestyle in fungi: global diversity, distribution and evolution of phylogenetic lineages. Mycorrhiza 20: 217-263.
33. Trappe JM. 1964. Mycorrhizal hosts and distribution of Cenococcum graniforme. Lloydia 27:100-106.
34. Trappe JM. 1969. Studies on Cenococcum graniforme I. An efficient method for isolation from sclerotia. Can J Bot 47:1389-1390.
35. Trappe JM. 1971. Mycorrhiza-forming Ascomycetes. In: Hacskaylo E, ed. Mycorrhizae. Washington, D.C.: USDA Forest Service. p 19-37.
36. Tsui CKM, Berbee ML. 2006. Phylogenetic relationships and convergence of helicosporous fungi inferred from ribosomal DNA sequences. Mol Phylogenet Evol 39: 587-597.
37. Wu BY, Nara K, Hogetsu T. 2005. Genetic structure of Cenococcum geophilum populations in primary successional volcanic deserts on Mount Fuji as revealed by microsatellite markers. New Phytol 165:285-293.