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Volumn 99, Issue 6, 2007, Pages 812-819

Significant diversity and potential problems associated with inferring population structure within the Cenococcum geophilum species complex

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; FUNGAL PROTEIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE (NADP); RIBOSOME DNA;

EID: 38849183281     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/mycologia.99.6.812     Document Type: Article
Times cited : (39)

References (40)
  • 1
    • 0000124211 scopus 로고
    • Molecular phylogeny of northern hemisphere species of Armillaria
    • Anderson JB, Stasovski E. 1992. Molecular phylogeny of northern hemisphere species of Armillaria. Mycologia 84:505-516.
    • (1992) Mycologia , vol.84 , pp. 505-516
    • Anderson, J.B.1    Stasovski, E.2
  • 2
    • 0033371578 scopus 로고    scopus 로고
    • Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences
    • Berbee ML, Pirseyedi M, Hubbard S. 1999. Cochliobolus phylogenetics and the origin of known, highly virulent pathogens, inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia 91:964-977.
    • (1999) Mycologia , vol.91 , pp. 964-977
    • Berbee, M.L.1    Pirseyedi, M.2    Hubbard, S.3
  • 3
    • 33750044587 scopus 로고    scopus 로고
    • Fungal diversity in molecular terms: Profiling, identification and quantification in the environment
    • Dighton J, White JF, Oudemans P, eds, 3rd ed. CRC Press. p
    • Bidartondo MI, Gardes M. 2005. Fungal diversity in molecular terms: profiling, identification and quantification in the environment. In: Dighton J, White JF, Oudemans P, eds. The fungal community - its organization and role in the ecosystem. 3rd ed. CRC Press. p 215-239.
    • (2005) The fungal community - its organization and role in the ecosystem , pp. 215-239
    • Bidartondo, M.I.1    Gardes, M.2
  • 4
    • 8644249174 scopus 로고    scopus 로고
    • Evolutionary studies of ectomycorrhizal fungi: Recent advances and future directions
    • Bruns TB, Shefferson RP. 2004. Evolutionary studies of ectomycorrhizal fungi: recent advances and future directions. Can J Bot 82:1122-1132.
    • (2004) Can J Bot , vol.82 , pp. 1122-1132
    • Bruns, T.B.1    Shefferson, R.P.2
  • 6
    • 1242299558 scopus 로고    scopus 로고
    • Host-parasite relationships among bolete infecting Hypomyces species
    • Douhan GW, Rizzo DM. 2003. Host-parasite relationships among bolete infecting Hypomyces species. Mycol Res 107:1342-1349.
    • (2003) Mycol Res , vol.107 , pp. 1342-1349
    • Douhan, G.W.1    Rizzo, D.M.2
  • 7
    • 15944405006 scopus 로고    scopus 로고
    • Phylogenetic divergence in a local population of the ectomycorrhizal fungus Cenococcum geophilum
    • _. 2005. Phylogenetic divergence in a local population of the ectomycorrhizal fungus Cenococcum geophilum. New Phytol 166:263-271.
    • (2005) New Phytol , vol.166 , pp. 263-271
    • Douhan, G.W.1    Rizzo, D.M.2
  • 8
    • 36048932661 scopus 로고    scopus 로고
    • Using the putative asexual fungus Cenococcum geophilum as a model to test how species concepts influence recombination ayalyses using sequence data from multiple loci
    • Douhna GW, Martin DP, Rizzo DM. 2007. Using the putative asexual fungus Cenococcum geophilum as a model to test how species concepts influence recombination ayalyses using sequence data from multiple loci. Curr Gen 52:191-201.
    • (2007) Curr Gen , vol.52 , pp. 191-201
    • Douhna, G.W.1    Martin, D.P.2    Rizzo, D.M.3
  • 9
    • 34250844310 scopus 로고    scopus 로고
    • Fruitbodies of Cenococcum geophilum
    • Fernández-Toirán LM, Águeda B. 2007. Fruitbodies of Cenococcum geophilum. Mycotaxon 100:109-114.
    • (2007) Mycotaxon , vol.100 , pp. 109-114
    • Fernández-Toirán, L.M.1    Águeda, B.2
  • 10
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for Basidiomycetes application to the identification of mycorrhizae and rusts
    • Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for Basidiomycetes application to the identification of mycorrhizae and rusts. Mol Ecol 2:113-118.
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 11
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: A Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs MJ, Armstrong JS, Gibbs AJ. 2000. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16:573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 12
    • 0000496940 scopus 로고
    • A review of the anamorphic genus Helicoma
    • Goos RD. 1986. A review of the anamorphic genus Helicoma. Mycologia 78:744-761.
    • (1986) Mycologia , vol.78 , pp. 744-761
    • Goos, R.D.1
  • 13
    • 2942536292 scopus 로고    scopus 로고
    • Evidence for subdivision and the root-endophyte Phialocephala fortinii into cryptic species and recombination within species
    • Grünig CR, McDonald BA, Siebert TN, et al. 2004. Evidence for subdivision and the root-endophyte Phialocephala fortinii into cryptic species and recombination within species. Fung Gen Biol 41:676-687.
    • (2004) Fung Gen Biol , vol.41 , pp. 676-687
    • Grünig, C.R.1    McDonald, B.A.2    Siebert, T.N.3
  • 14
    • 0001795139 scopus 로고    scopus 로고
    • Defining species in the fungi
    • Worrall JJ, ed, Dordrecht, The Netherlands: Kluwer Academic Press. p
    • Harrington TC, Rizzo DM. 1999. Defining species in the fungi. In: Worrall JJ, ed. Structure and dynamics of fungal populations. Dordrecht, The Netherlands: Kluwer Academic Press. p 43-71.
    • (1999) Structure and dynamics of fungal populations , pp. 43-71
    • Harrington, T.C.1    Rizzo, D.M.2
  • 15
    • 0003017673 scopus 로고
    • Phylogenetic relationships among coprinoid taxa and allies based on data from restriction site mapping of nuclear rDNA
    • Hopple J, Vilgayls R. 1994. Phylogenetic relationships among coprinoid taxa and allies based on data from restriction site mapping of nuclear rDNA. Mycologia 86:96-107.
    • (1994) Mycologia , vol.86 , pp. 96-107
    • Hopple, J.1    Vilgayls, R.2
  • 16
    • 0036111239 scopus 로고    scopus 로고
    • Cenococcum geophilum populations show a high degree of genetic diversity in beech forests
    • Jany JL, Garbaye J, Martin F. 2002. Cenococcum geophilum populations show a high degree of genetic diversity in beech forests. New Phytol 154:651-659.
    • (2002) New Phytol , vol.154 , pp. 651-659
    • Jany, J.L.1    Garbaye, J.2    Martin, F.3
  • 17
    • 0034942559 scopus 로고    scopus 로고
    • Gene genealogies, cryptic species, and molecular evolution in the human pathogen Coccidioides immitis and relatives (Ascomycota, Onygenales)
    • Koufopanou V, Burt A, Szaro T, Taylor JW. 2001. Gene genealogies, cryptic species, and molecular evolution in the human pathogen Coccidioides immitis and relatives (Ascomycota, Onygenales). Mol Biol Evol 18:1246-1258.
    • (2001) Mol Biol Evol , vol.18 , pp. 1246-1258
    • Koufopanou, V.1    Burt, A.2    Szaro, T.3    Taylor, J.W.4
  • 18
    • 0000856986 scopus 로고
    • Isolation of DNA from fungal mycelia and single spores
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds, San Diego: Academic Press. p
    • Lee SB, Taylor JW. 1990. Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods, applications. San Diego: Academic Press. p 282-287.
    • (1990) PCR protocols: A guide to methods, applications , pp. 282-287
    • Lee, S.B.1    Taylor, J.W.2
  • 19
    • 0001847585 scopus 로고    scopus 로고
    • Ectomycorrhizal fungi: Key genera in profile
    • Cairney JWG, Chambers SM, eds, Berlin: Springer-Verlag. p
    • LoBuglio KF. 1999. Ectomycorrhizal fungi: key genera in profile., Cairney JWG, Chambers SM, eds. Cenococcum. Berlin: Springer-Verlag. p 287-309.
    • (1999) Cenococcum , pp. 287-309
    • LoBuglio, K.F.1
  • 20
    • 0001644813 scopus 로고
    • Variation in ribosomal DNA among isolates of the mycorrhizal fungus Cenococcum geophilum
    • _, Rogers SO, Wang CJK. 1991. Variation in ribosomal DNA among isolates of the mycorrhizal fungus Cenococcum geophilum. Can J Bot 69:2331-2343.
    • (1991) Can J Bot , vol.69 , pp. 2331-2343
    • LoBuglio, K.F.1    Rogers, S.O.2    Wang, C.J.K.3
  • 21
    • 0036767622 scopus 로고    scopus 로고
    • Recombination and genetic differentiation in the mycorrhizal fungus Cenococcum geophilum Fr
    • _, Taylor JW. 2002. Recombination and genetic differentiation in the mycorrhizal fungus Cenococcum geophilum Fr. Mycologia 94:772-780.
    • (2002) Mycologia , vol.94 , pp. 772-780
    • LoBuglio, K.F.1    Rogers, S.O.2    Wang, C.J.K.3    Taylor, J.W.4
  • 22
    • 38849113541 scopus 로고    scopus 로고
    • Maddison DR, Maddison WP. 2001. MacClade 4: analysis of phylogeny and character evolution. version 4.03. Sunderland, Massachusetts: Sinauer Associates
    • Maddison DR, Maddison WP. 2001. MacClade 4: analysis of phylogeny and character evolution. version 4.03. Sunderland, Massachusetts: Sinauer Associates.
  • 23
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • Martin D, Rybicki E. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 24
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Maynard Smith J. 1992. Analyzing the mosaic structure of genes. J Mol Evol 34:126-129.
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 25
    • 33745511550 scopus 로고    scopus 로고
    • Ericoid mycorrhizal associations: Ability to adapt to a broad range of habitats
    • Mitchell DT, Gibson BR. 2006. Ericoid mycorrhizal associations: ability to adapt to a broad range of habitats. Mycologist 20:2-9.
    • (2006) Mycologist , vol.20 , pp. 2-9
    • Mitchell, D.T.1    Gibson, B.R.2
  • 27
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam M, Sawyer S, Fauquet CM. 1999. Possible emergence of new geminiviruses by frequent recombination. Virology 265:218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 28
    • 0035401290 scopus 로고    scopus 로고
    • Diversity of Cenococcum geophilum isolates from serpentine and non-serpentine soils
    • Panaccione DG, Sheets NL, Miller SP, Cumming JR. 2001. Diversity of Cenococcum geophilum isolates from serpentine and non-serpentine soils. Mycologia 93:645-652.
    • (2001) Mycologia , vol.93 , pp. 645-652
    • Panaccione, D.G.1    Sheets, N.L.2    Miller, S.P.3    Cumming, J.R.4
  • 29
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • Posada D, Crandall KA. 2001. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc Nat Acad Sc 98:13757-13762.
    • (2001) Proc Nat Acad Sc , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 30
    • 0028793170 scopus 로고
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
    • Salminen MO, Carr JK, Burke DA, McCutchan FE. 1995. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retrovir 11:1423-1425.
    • (1995) AIDS Res Hum Retrovir , vol.11 , pp. 1423-1425
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.A.3    McCutchan, F.E.4
  • 31
    • 0033062206 scopus 로고    scopus 로고
    • Comparison of ribosomal DNA ITS regions among geographic isolates of Cenococcum geophilum
    • Shinohara ML, LoBuglio KF, Rogers SO. 1999. Comparison of ribosomal DNA ITS regions among geographic isolates of Cenococcum geophilum. Curr Gen 35:527-535.
    • (1999) Curr Gen , vol.35 , pp. 527-535
    • Shinohara, M.L.1    LoBuglio, K.F.2    Rogers, S.O.3
  • 32
    • 0036889720 scopus 로고    scopus 로고
    • Population structure and pathogenicity of members of the Fusarium oxysporum complex isolated from soil and root necrosis of pea (Pisum sativum L.)
    • Skovgaard K, Bodker L, Rosendahl S. 2002. Population structure and pathogenicity of members of the Fusarium oxysporum complex isolated from soil and root necrosis of pea (Pisum sativum L.). FEMS Microbiol Ecol 42:367-374.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 367-374
    • Skovgaard, K.1    Bodker, L.2    Rosendahl, S.3
  • 34
    • 38849148670 scopus 로고    scopus 로고
    • Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony *and other methods, version 4.0b10. Sunderland, Massachusetts: Sinauer Associates
    • Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods). version 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
  • 35
    • 0034500354 scopus 로고    scopus 로고
    • Phylogenetic species recognition and species concepts in fungi
    • Taylor JW, Jacobson DJ, Kroken S, et al. 2000. Phylogenetic species recognition and species concepts in fungi. Fung Gen Biol 31:21-32.
    • (2000) Fung Gen Biol , vol.31 , pp. 21-32
    • Taylor, J.W.1    Jacobson, D.J.2    Kroken, S.3
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nuc Acid Res 24:4876-4882.
    • (1997) Nuc Acid Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 0005806363 scopus 로고
    • Mycorrhizal hosts and distribution of Cenococcum graniforme
    • Trappe JM. 1964. Mycorrhizal hosts and distribution of Cenococcum graniforme. Lloydia 27:100-106.
    • (1964) Lloydia , vol.27 , pp. 100-106
    • Trappe, J.M.1
  • 38
    • 33646402054 scopus 로고    scopus 로고
    • Phylogenetic relationships and convergence of helicosporuous fungi inferred from ribosomal DNA sequences
    • Tsui CKM, Berbee ML. 2006. Phylogenetic relationships and convergence of helicosporuous fungi inferred from ribosomal DNA sequences. Mol Phylogenet Evol 39:587-597.
    • (2006) Mol Phylogenet Evol , vol.39 , pp. 587-597
    • Tsui, C.K.M.1    Berbee, M.L.2
  • 39
    • 0037066845 scopus 로고    scopus 로고
    • Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus
    • Worobey M, Rambaut A, Pybus OG, et al. 2002. Questioning the evidence for genetic recombination in the 1918 "Spanish flu" virus. Science 296:5566.
    • (2002) Science , vol.296 , pp. 5566
    • Worobey, M.1    Rambaut, A.2    Pybus, O.G.3
  • 40
    • 11144324860 scopus 로고    scopus 로고
    • Genetic structure of Cenococcum geophilum populations in primary successional volcanic deserts on Mount Fuji as revealed by microsatellite markers
    • Wu BY, Nara K, Hogetsu T. 2005. Genetic structure of Cenococcum geophilum populations in primary successional volcanic deserts on Mount Fuji as revealed by microsatellite markers. New Phytol 165:285-293.
    • (2005) New Phytol , vol.165 , pp. 285-293
    • Wu, B.Y.1    Nara, K.2    Hogetsu, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.