Excitonic energy transfer in light-harvesting complexes in purple bacteria

Journal of Chemical Physics

Volumn 136, Issue 24, 2012, Pages

  Ye, Jun ^a   Sun, Kewei ^a   Zhao, Yang ^a   Yu, Yunjin ^a,b   Kong Lee, Chee ^a   Cao, Jianshu ^c  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

^b SHENZHEN UNIVERSITY   (China)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR SYMMETRY; COHERENT ENERGY TRANSFER; DEPHASING; DEPHASING RATES; DIPOLAR COUPLINGS; DIPOLAR INTERACTION; ENERGY TRANSFER DYNAMICS; ENERGY TRANSFER EFFICIENCY; EXCITON TRANSFER; EXCITONIC ENERGY; HIGH-ENERGY TRANSFERS; LIGHT-HARVESTING; LIGHT-HARVESTING COMPLEX; LOCAL MINIMUMS; NEAREST-NEIGHBOR COUPLING; PHOTOSYNTHETIC SYSTEMS; POLARON DYNAMICS; PURPLE BACTERIA; SYMMETRY-BREAKING; TIME-DEPENDENT; TIME-SCALES; TOY MODELS; TRANSFER PATHS; TRAPPING TIME;

BACTERIA; CHROMOPHORES; DYNAMICS; EFFICIENCY; EXCITONS;

ENERGY TRANSFER;

PHYCOBILIPROTEIN;

ARTICLE; ENERGY TRANSFER; METABOLISM; PROTEOBACTERIA; THEORETICAL MODEL;

ENERGY TRANSFER; MODELS, THEORETICAL; PHYCOBILIPROTEINS; PROTEOBACTERIA;

EID: 84863516677     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4729786     Document Type: Article

References (59)

1. K. Sauer, Annu. Rev. Phys. Chem. 30, 155 (1979). 10.1146/annurev.pc.30. 100179.001103
2. R. E. Blankenship, Molecular Mechanisms of Photosynthesis (Blackwell Science, Oxford/Malden, 2002).
3. R. van Grondelle and V. I. Novoderezhkin, Phys. Chem. Chem. Phys. 8, 793 (2006). 10.1039/b514032c
4. G. D. Scholes, Annu. Rev. Phys. Chem. 54, 57 (2003). 10.1146/annurev. physchem.54.011002.103746
5. Y. C. Cheng and G. R. Fleming, Annu. Rev. Phys. Chem. 60, 241 (2009). 10.1146/annurev.physchem.040808.090259
6. S. Jang, M. D. Newton, and R. J. Silbey, Phys. Rev. Lett. 92, 218301 (2004). 10.1103/PhysRevLett.92.218301
7. S. Jang, M. D. Netwton, and R. J. Silbey, J. Phys. Chem. B 111, 6807 (2007). 10.1021/jp070111l
8. S. Jang, J. Chem. Phys. 127, 174710 (2007). 10.1063/1.2779031
9. S. Jang, M. D. Newton, and R. J. Silbey, J. Chem. Phys. 118, 9312 (2003). 10.1063/1.1569239
10. S. Jang and R. J. Silbey, J. Chem. Phys. 118, 9324 (2003). 10.1063/1.1569240
11. H. P. Breuer and F. Petruccione, The Theory of Open Quantum Systems (Oxford University Press, Oxford, 2002).
12. A. G. Redfield, IBM J. Res. Dev. 1, 19 (1957). 10.1147/rd.11.0019
13. D. J. Heijs, V. A. Malyshev, and J. Knoester, Phys. Rev. Lett. 95, 177402 (2005). 10.1103/PhysRevLett.95.177402
14. M. Schröder, U. Kleinekathofer, and M. Schreiber, J. Chem. Phys. 124, 084903 (2006). 10.1063/1.2171188
15. P. Huo and D. F. Coker, J. Chem. Phys. 133, 184108 (2010). 10.1063/1.3498901
16. A. Ishizaki and Y. Tanimura, J. Phys. Soc. Jpn. 74, 3131 (2005). 10.1143/JPSJ.74.3131
17. M. Tanaka and Y. Tanimura, J. Phys. Soc. Jpn. 78, 073802 (2009). 10.1143/JPSJ.78.073802
18. M. Tanaka and Y. Tanimura, J. Chem. Phys. 132, 214502 (2010). 10.1063/1.3428674
19. A. Sakurai and Y. Tanimura, J. Phys. Chem. A 115, 4009-4022 (2011). 10.1021/jp1095618
20. P. Huo and D. F. Coker, J. Chem. Phys. 135, 201101 (2011). 10.1063/1.3664763
21. P. Huo and D. F. Coker, J. Phys. Chem. Lett. 2, 825 (2011). 10.1021/jz200301j
22. P. Huo and D. F. Coker, J. Chem. Phys. 136, 115102 (2012). 10.1063/1.3693019
23. D. P. S. McCutcheon and A. Nazir, New J. Phys. 12, 113042 (2010). 10.1088/1367-2630/12/11/113042
24. D. P. S. McCutcheon and A. Nazir, Phys. Rev. B 83, 165101 (2011). 10.1103/PhysRevB.83.165101
25. D. P. S. McCutcheon and A. Nazir, J. Chem. Phys. 135, 114501 (2011). 10.1063/1.3636081
26. S. Jang, Y. C. Cheng, D. R. Reichman, and J. D. Eaves, J. Chem. Phys. 129, 101104 (2008). 10.1063/1.2977974
27. S. Jang, J. Chem. Phys. 131, 164101 (2009). 10.1063/1.3247899
28. S. Jang, J. Chem. Phys. 135, 034105 (2011). 10.1063/1.3608914
29. G. McDermontt, S. M. Prince, A. A. Freer, A. M. Hawthornthwaite, M. Z. Papiz, R. J. Cogdell, and N. W. Issacs, Nature (London) 374, 517 (1995). 10.1038/374517a0
30. J. Koepke, X. Hu, C. Muenke, K. Schulten, and H. Michel, Structure 4, 581 (1996). 10.1016/S0969-2126(96)00063-9
31. E. Harel, J. Chem. Phys. 136, 174104 (2012). 10.1063/1.4704656
32. T. Brixner, J. Stenger, H. M. Vaswani, M. Cho, R. E. Blankenship, and G. R. Fleming, Nature (London) 434, 625 (2005). 10.1038/nature03429
33. Y. Zhao, M. F. Ng, and G. H. Chen, Phys. Rev. E 69, 032902 (2004). 10.1103/PhysRevE.69.032902
34. A. Olaya-Castro, C. F. Lee, F. F. Olsen, and N. F. Johnson, Phys. Rev. B 78, 085115 (2008). 10.1103/PhysRevB.78.085115
35. F. Fassioli, A. Olaya-castro, S. Scheuring, J. N. Sturgis, and N. F. Johnson, Biophys. J. 97, 2464 (2009). 10.1016/j.bpj.2009.08.033
36. F. Müh, M. EI-A. Madjet, J. Adolphs, A. Abdurahman, B. Rabenstein, H. Ishikita, E. W. Knapp, and T. Renger, Proc. Natl. Acad. Sci. U.S.A. 104, 16862 (2007). 10.1073/pnas.0708222104
37. A. Ishizaki and G. R. Fleming, Proc. Natl. Acad. Sci. U.S.A. 106, 17255 (2009). 10.1073/pnas.0908989106
38. X. Hu, T. Ritz, A. Damjanović, F. Autenrieth, and K. Schulten, Q. Rev. Biophys. 35, 1 (2002). 10.1017/S0033583501003754
39. J. S. Cao and R. J. Silbey, J. Phys. Chem. A 113, 13825 (2009). 10.1021/jp9032589
40. J. H. Kim and J. S. Cao, J. Phys. Chem. B 114, 16189 (2010). 10.1021/jp106838k
41. H. Haken and G. Strobl, Z. Phys. 262, 135 (1973). 10.1007/BF01399723
42. T. Holstein, Ann. Phys. 8, 325 (1959); 10.1016/0003-4916(59)90002-8
43. T. Holstein, Ann. Phys. 8, 343 (1959). 10.1016/0003-4916(59)90003-X
44. G. D. Mahan, Many Particle Physics, 3rd ed. (Kluwer, 2000).
45. C. Olbrich and U. Kleinekathöfer, J. Phys. Chem. B 114, 12427 (2010). 10.1021/jp106542v
46. X. Hu, T. Ritz, A. Damjanović, and K. Schulten, J. Phys. Chem. B 101, 3854 (1997). 10.1021/jp963777g
47. C. Itzykson and J. Zuber, Many-Particle Physics (McGraw-Hill, New York, 1980).
48. C. Hofmann, T. J. Aartsma, H. Michel, and J. Köhler, Proc. Natl. Acad. Sci. U.S.A. 100, 15534 (2003). 10.1073/pnas.2533896100
49. B. Luo, J. Ye, C. B. Guan, and Y. Zhao, Phys. Chem. Chem. Phys. 12, 15073 (2010). 10.1039/c0cp00663g
50. B. Luo, J. Ye, and Y. Zhao, Phys. Status Solidi C 8, 70 (2011). 10.1002/pssc.201000721
51. S. Jang, R. J. Silbey, R. Kunz, and C. Hofmann, and J. Köhler, J. Phys. Chem. B 115, 12947 (2011). 10.1021/jp202344s
52. A. Damjanović, I. Kosztin, U. Kleinekathöfer, and K. Schulten, Phys. Rev. E 65, 031919 (2002). 10.1103/PhysRevE.65.031919
53. T. Ritz, A. Damjanović, and K. Schulten, Chem. Phys. Chem. 3, 243 (2002). 10.1002/1439-7641(20020315)3:3243::AID-CPHC243>3.0.CO;2-Y
54. H. D. Kim, Y. Tanimura, and M. H. Cho, J. Chem. Phys. 127, 075101 (2007). 10.1063/1.2754680
55. E. O. Potma and D. A. Wiersma, J. Chem. Phys. 108, 4894 (1998). 10.1063/1.475898
56. J. L. Herek, Biophys. J. 78, 2590 (2000). 10.1016/S0006-3495(00)76803-2
57. S. Jang, S. E. Dempster, and R. J. Silbey, J. Phys. Chem. B 105, 6655 (2001). 10.1021/jp010169e
58. G. D. Scholes, Nat. Chem. 3, 763 (2011). 10.1038/nchem.1145
59. T. Scholak, Phys. Rev. E 83, 021912 (2011). 10.1103/PhysRevE.83.021912