-
1
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl,M.C., Will,C.L. and Lührmann,R. (2009) The spliceosome: design principles of a dynamic RNP machine. Cell, 136, 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Lührmann, R.3
-
3
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
DOI 10.1038/nature07509, PII NATURE07509
-
Wang,E.T., Sandberg,R., Luo,S., Khrebtukova,I., Zhang,L., Mayr,C., Kingsmore,S.F., Schroth,G.P. and Burge,C.B. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 456, 470-476. (Pubitemid 352759009)
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
4
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan,Q., Shai,O., Lee,L.J., Frey,B.J. and Blencowe,B.J. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet., 40, 1413-1415.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
5
-
-
60149093432
-
RNA and disease
-
Cooper,T.A., Wan,L. and Dreyfuss,G. (2009) RNA and disease. Cell, 136, 777-793.
-
(2009)
Cell
, vol.136
, pp. 777-793
-
-
Cooper, T.A.1
Wan, L.2
Dreyfuss, G.3
-
6
-
-
77952029221
-
Deciphering the splicing code
-
Barash,Y., Calarco,J.A., Gao,W., Pan,Q., Wang,X., Shai,O., Blencowe,B.J. and Frey,B.J. (2010) Deciphering the splicing code. Nature, 465, 53-59.
-
(2010)
Nature
, vol.465
, pp. 53-59
-
-
Barash, Y.1
Calarco, J.A.2
Gao, W.3
Pan, Q.4
Wang, X.5
Shai, O.6
Blencowe, B.J.7
Frey, B.J.8
-
7
-
-
0024327898
-
The leukocyte common antigen family
-
Thomas,M.L. (1989) The leukocyte common antigen family. Annu. Rev. Immunol., 7, 339-369.
-
(1989)
Annu. Rev. Immunol.
, vol.7
, pp. 339-369
-
-
Thomas, M.L.1
-
8
-
-
0023394263
-
B-cell variant of mouse T200 (Ly-5): Evidence for alternative mRNA splicing
-
Thomas,M.L., Reynolds,P.J., Chain,A., Ben-Neriah,Y. and Trowbridge,I.S. (1987) B-cell variant of mouse T200 (Ly-5): evidence for alternative mRNA splicing. Proc. Natl Acad. Sci. USA, 84, 5360-5363.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 5360-5363
-
-
Thomas, M.L.1
Reynolds, P.J.2
Chain, A.3
Ben-Neriah, Y.4
Trowbridge, I.S.5
-
9
-
-
0023395733
-
Alternative use of 5′ exons in the specification of Ly-5 isoforms distinguishing hematopoietic cell lineages
-
Saga,Y., Tung,J.S., Shen,F.W. and Boyse,E.A. (1987) Alternative use of 5′ exons in the specification of Ly-5 isoforms distinguishing hematopoietic cell lineages. Proc. Natl Acad. Sci. USA, 84, 5364-5368.
-
(1987)
Proc. Natl Acad. Sci. USA
, vol.84
, pp. 5364-5368
-
-
Saga, Y.1
Tung, J.S.2
Shen, F.W.3
Boyse, E.A.4
-
10
-
-
0023636055
-
Differential usage of three exons generates at least five different mRNAs encoding human leukocyte common antigens
-
Streuli,M., Hall,L.R., Saga,Y., Schlossman,S.F. and Saito,H. (1987) Differential usage of three exons generates at least five different mRNAs encoding human leukocyte common antigens. J. Exp. Med., 166, 1548-1566. (Pubitemid 18051443)
-
(1987)
Journal of Experimental Medicine
, vol.166
, Issue.5
, pp. 1548-1566
-
-
Streuli, M.1
Hall, L.R.2
Saga, Y.3
Schlossman, S.F.4
Saito, H.5
-
11
-
-
0036346992
-
Negative regulation of CD45 by differential homodimerization of the alternatively spliced isoforms
-
Xu,Z. and Weiss,A. (2002) Negative regulation of CD45 by differential homodimerization of the alternatively spliced isoforms. Nat. Immunol., 3, 764-771.
-
(2002)
Nat. Immunol.
, vol.3
, pp. 764-771
-
-
Xu, Z.1
Weiss, A.2
-
12
-
-
0038815306
-
CD45: A critical regulator of signaling thresholds in immune cells
-
DOI 10.1146/annurev.immunol.21.120601.140946
-
Hermiston,M.L., Xu,Z. and Weiss,A. (2003) CD45: a critical regulator of signaling thresholds in immune cells. Annu. Rev. Immunol., 21, 107-137. (Pubitemid 37174528)
-
(2003)
Annual Review of Immunology
, vol.21
, pp. 107-137
-
-
Hermiston, M.L.1
Xu, Z.2
Weiss, A.3
-
13
-
-
0026706364
-
CD45 expression by B cells. Expression of different CD45 isoforms by subpopulations of activated B cells
-
Hathcock,K.S., Hirano,H., Murakami,S. and Hodes,R.J. (1992) CD45 expression by B cells. Expression of different CD45 isoforms by subpopulations of activated B cells. J. Immunol., 149, 2286-2294.
-
(1992)
J. Immunol.
, vol.149
, pp. 2286-2294
-
-
Hathcock, K.S.1
Hirano, H.2
Murakami, S.3
Hodes, R.J.4
-
14
-
-
0027486329
-
Induction of CD45 isoform switch in murine B cells by antigen receptor stimulation and by phorbol myristate acetate and ionomycin
-
DOI 10.1006/cimm.1993.1224
-
Ogimoto,M., Katagiri,T., Hasegawa,K., Mizuno,K. and Yakura,H. (1993) Induction of CD45 isoform switch in murine B cells by antigen receptor stimulation and by phorbol myristate acetate and ionomycin. Cell. Immunol., 151, 97-109. (Pubitemid 23308437)
-
(1993)
Cellular Immunology
, vol.151
, Issue.1
, pp. 97-109
-
-
Ogimoto, M.1
Katagiri, T.2
Hasegawa, K.3
Mizuno, K.4
Yakura, H.5
-
15
-
-
0033986766
-
A model system for activation-induced alternative splicing of CD45 pre- mRNA in T cells implicates protein kinase C and Ras
-
Lynch,K.W. and Weiss,A. (2000) A model system for activation-induced alternative splicing of CD45 pre-mRNA in T cells implicates protein kinase C and Ras. Mol. Cell. Biol., 20, 70-80. (Pubitemid 30002549)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.1
, pp. 70-80
-
-
Lynch, K.W.1
Weiss, A.2
-
16
-
-
23844471326
-
HnRNP L represses exon splicing via a regulated exonic splicing silencer
-
DOI 10.1038/sj.emboj.7600745
-
Rothrock,C.R., House,A.E. and Lynch,K.W. (2005) HnRNP L represses exon splicing via a regulated exonic splicing silencer. EMBO J., 24, 2792-2802. (Pubitemid 41170028)
-
(2005)
EMBO Journal
, vol.24
, Issue.15
, pp. 2792-2802
-
-
Rothrock, C.R.1
House, A.E.2
Lynch, K.W.3
-
17
-
-
33644525401
-
Differential expression of CD45 isoforms is controlled by the combined activity of basal and inducible splicing-regulatory elements in each of the variable exons
-
DOI 10.1074/jbc.M508123200
-
Tong,A., Nguyen,J. and Lynch,K.W. (2005) Differential expression of CD45 isoforms is controlled by the combined activity of basal and inducible splicing-regulatory elements in each of the variable exons. J. Biol. Chem., 280, 38297-38304. (Pubitemid 43853727)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.46
, pp. 38297-38304
-
-
Tong, A.1
Nguyen, J.2
Lynch, K.W.3
-
18
-
-
52949090808
-
A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4
-
Topp,J.D., Jackson,J., Melton,A.A. and Lynch,K.W. (2008) A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4. RNA, 14, 2038-2049.
-
(2008)
RNA
, vol.14
, pp. 2038-2049
-
-
Topp, J.D.1
Jackson, J.2
Melton, A.A.3
Lynch, K.W.4
-
19
-
-
48749100692
-
Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL
-
Oberdoerffer,S., Moita,L.F., Neems,D., Freitas,R.P., Hacohen,N. and Rao,A. (2008) Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL. Science, 321, 686-691.
-
(2008)
Science
, vol.321
, pp. 686-691
-
-
Oberdoerffer, S.1
Moita, L.F.2
Neems, D.3
Freitas, R.P.4
Hacohen, N.5
Rao, A.6
-
20
-
-
57449113390
-
Memory T cell RNA rearrangement programmed by heterogeneous nuclear ribonucleoprotein hnRNPLL
-
Wu,Z., Jia,X., de la Cruz,L., Su,X.C., Marzolf,B., Troisch,P., Zak,D., Hamilton,A., Whittle,B., Yu,D. et al. (2008) Memory T cell RNA rearrangement programmed by heterogeneous nuclear ribonucleoprotein hnRNPLL. Immunity, 29, 863-875.
-
(2008)
Immunity
, vol.29
, pp. 863-875
-
-
Wu, Z.1
Jia, X.2
De La Cruz, L.3
Su, X.C.4
Marzolf, B.5
Troisch, P.6
Zak, D.7
Hamilton, A.8
Whittle, B.9
Yu, D.10
-
21
-
-
74749089043
-
Context-dependent regulatory mechanism of the splicing factor hnRNP L
-
Motta-Mena,L.B., Heyd,F. and Lynch,K.W. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol. Cell, 37, 223-234.
-
(2010)
Mol. Cell
, vol.37
, pp. 223-234
-
-
Motta-Mena, L.B.1
Heyd, F.2
Lynch, K.W.3
-
22
-
-
80455176999
-
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
-
Shukla,S., Kavak,E., Gregory,M., Imashimizu,M., Shutinoski,B., Kashlev,M., Oberdoerffer,P., Sandberg,R. and Oberdoerffer,S. (2011) CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. Nature, 479, 74-79.
-
(2011)
Nature
, vol.479
, pp. 74-79
-
-
Shukla, S.1
Kavak, E.2
Gregory, M.3
Imashimizu, M.4
Shutinoski, B.5
Kashlev, M.6
Oberdoerffer, P.7
Sandberg, R.8
Oberdoerffer, S.9
-
23
-
-
62849102677
-
Auto- and cross-regulation of the hnRNP L proteins by alternative splicing
-
Rossbach,O., Hung,L.H., Schreiner,S., Grishina,I., Heiner,M., Hui,J. and Bindereif,A. (2009) Auto- and cross-regulation of the hnRNP L proteins by alternative splicing. Mol. Cell. Biol., 29, 1442-1451.
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1442-1451
-
-
Rossbach, O.1
Hung, L.H.2
Schreiner, S.3
Grishina, I.4
Heiner, M.5
Hui, J.6
Bindereif, A.7
-
24
-
-
60149091561
-
A stress-responsive RNA switch regulates VEGFA expression
-
Ray,P.S., Jia,J., Yao,P., Majumder,M., Hatzoglou,M. and Fox,P.L. (2009) A stress-responsive RNA switch regulates VEGFA expression. Nature, 457, 915-919.
-
(2009)
Nature
, vol.457
, pp. 915-919
-
-
Ray, P.S.1
Jia, J.2
Yao, P.3
Majumder, M.4
Hatzoglou, M.5
Fox, P.L.6
-
25
-
-
38649129366
-
Diverse roles of hnRNP L in mammalian mRNA processing: A combined microarray and RNAi analysis
-
DOI 10.1261/rna.725208
-
Hung,L.H., Heiner,M., Hui,J., Schreiner,S., Benes,V. and Bindereif,A. (2008) Diverse roles of hnRNP L in mammalian mRNA processing: a combined microarray and RNAi analysis. RNA, 14, 284-296. (Pubitemid 351171589)
-
(2008)
RNA
, vol.14
, Issue.2
, pp. 284-296
-
-
Hung, L.-H.1
Heiner, M.2
Hui, J.3
Schreiner, S.4
Benes, V.5
Bindereif, A.6
-
26
-
-
21244469877
-
Intronic CA-repeat and CA-rich elements: A new class of regulators of mammalian alternative splicing
-
DOI 10.1038/sj.emboj.7600677
-
Hui,J., Hung,L.H., Heiner,M., Schreiner,S., Neumüller,N., Reither,G., Haas,S.A. and Bindereif,A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J., 24, 1988-1998. (Pubitemid 40896170)
-
(2005)
EMBO Journal
, vol.24
, Issue.11
, pp. 1988-1998
-
-
Hui, J.1
Hung, L.-H.2
Heiner, M.3
Schreiner, S.4
Neumuller, N.5
Reither, G.6
Haas, S.A.7
Bindereif, A.8
-
27
-
-
33847714599
-
Extensive immunoglobulin production sensitizes myeloma cells for proteasome inhibition
-
DOI 10.1158/0008-5472.CAN-06-2258
-
Meister,S., Schubert,U., Neubert,K., Herrmann,K., Burger,R., Gramatzki,M., Hahn,S., Schreiber,S., Wilhelm,S., Herrmann,M. et al. (2007) Extensive immunoglobulin production sensitizes myeloma cells for proteasome inhibition. Cancer Res., 67, 1783-1792. (Pubitemid 46383406)
-
(2007)
Cancer Research
, vol.67
, Issue.4
, pp. 1783-1792
-
-
Meister, S.1
Schubert, U.2
Neubert, K.3
Herrmann, K.4
Burger, R.5
Gramatzki, M.6
Hahn, S.7
Schreiber, S.8
Wilhelm, S.9
Herrmann, M.10
Jack, H.-M.11
Voll, R.E.12
-
28
-
-
9144231336
-
Interleukin-6-dependent gene expression profiles in multiple myeloma INA-6 cells reveal a Bcl-2 family-independent survival pathway closely associated with Stat3 activation
-
DOI 10.1182/blood-2003-04-1048
-
Brocke-Heidrich,K., Kretzschmar,A.K., Pfeifer,G., Henze,C., Löffler,D., Koczan,D., Thiesen,H.J., Burger,R., Gramatzki,M. and Horn,F. (2004) Interleukin-6-dependent gene expression profiles in multiple myeloma INA-6 cells reveal a Bcl-2 family-independent survival pathway closely associated with Stat3 activation. Blood, 103, 242-251. (Pubitemid 38029945)
-
(2004)
Blood
, vol.103
, Issue.1
, pp. 242-251
-
-
Brocke-Heidrich, K.1
Kretzschmar, A.K.2
Pfeifer, G.3
Henze, C.4
Loffler, D.5
Koczan, D.6
Thiesen, H.-J.7
Burger, R.8
Gramatzki, M.9
Horn, F.10
-
29
-
-
79956132845
-
RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation
-
Rösel,T.D., Hung,L.H., Medenbach,J., Donde,K., Starke,S., Benes,V., Rätsch,G. and Bindereif,A. (2011) RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. EMBO J., 30, 1965-1976.
-
(2011)
EMBO J.
, vol.30
, pp. 1965-1976
-
-
Rösel, T.D.1
Hung, L.H.2
Medenbach, J.3
Donde, K.4
Starke, S.5
Benes, V.6
Rätsch, G.7
Bindereif, A.8
-
30
-
-
0037217365
-
HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats
-
DOI 10.1038/nsb875
-
Hui,J., Stangl,K., Lane,W.S. and Bindereif,A. (2003) HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat. Struct. Biol., 10, 33-37. (Pubitemid 36034174)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.1
, pp. 33-37
-
-
Hui, J.1
Stangl, K.2
Lane, W.S.3
Bindereiff, A.4
-
31
-
-
0030832044
-
A complex intronic splicing enhancer from the c-src pre-mRNA activates inclusion of a heterologous exon
-
Modafferi,E.F. and Black,D.L. (1997) A complex intronic splicing enhancer from the c-src pre-mRNA activates inclusion of a heterologous exon. Mol. Cell. Biol., 17, 6537-6545. (Pubitemid 27451200)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.11
, pp. 6537-6545
-
-
Modafferi, E.F.1
Black, D.L.2
-
32
-
-
84889426403
-
3′-Terminal attachment of fluorescent dyes and biotin
-
Hartmann,R.K., Bindereif,A., Schön,A. and Westhof,E. (eds), Wiley-VCH, New York
-
Willkomm,D.K. and Hartmann,R.K. (2005) 3′-Terminal attachment of fluorescent dyes and biotin. In: Hartmann,R.K., Bindereif,A., Schön,A. and Westhof,E. (eds), Handbook of RNA biochemistry. Wiley-VCH, New York, pp. 86-94.
-
(2005)
Handbook of RNA Biochemistry
, pp. 86-94
-
-
Willkomm, D.K.1
Hartmann, R.K.2
-
33
-
-
34547205013
-
Crossregulation and Functional Redundancy between the Splicing Regulator PTB and Its Paralogs nPTB and ROD1
-
DOI 10.1016/j.molcel.2007.06.016, PII S1097276507004066
-
Spellman,R., Llorian,M. and Smith,C.W. (2007) Crossregulation and functional redundancy between the splicing regulator PTB and its paralogs nPTB and ROD1. Mol. Cell, 27, 420-434. (Pubitemid 47126939)
-
(2007)
Molecular Cell
, vol.27
, Issue.3
, pp. 420-434
-
-
Spellman, R.1
Llorian, M.2
Smith, C.W.J.3
-
34
-
-
51949111100
-
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
-
Zhang,C., Zhang,Z., Castle,J., Sun,S., Johnson,J., Krainer,A.R. and Zhang,M.Q. (2008) Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes Dev., 22, 2550-2563.
-
(2008)
Genes Dev.
, vol.22
, pp. 2550-2563
-
-
Zhang, C.1
Zhang, Z.2
Castle, J.3
Sun, S.4
Johnson, J.5
Krainer, A.R.6
Zhang, M.Q.7
-
35
-
-
61649087689
-
ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing
-
Warzecha,C.C., Sato,T.K., Nabet,B., Hogenesch,J.B. and Carstens,R.P. (2009) ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Mol. Cell, 33, 591-601.
-
(2009)
Mol. Cell
, vol.33
, pp. 591-601
-
-
Warzecha, C.C.1
Sato, T.K.2
Nabet, B.3
Hogenesch, J.B.4
Carstens, R.P.5
-
36
-
-
58149492467
-
A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart
-
Kalsotra,A., Xiao,X., Ward,A.J., Castle,J.C., Johnson,J.M., Burge,C.B. and Cooper,T.A. (2008) A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart. Proc. Natl Acad. Sci. USA, 105, 20333-20338.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 20333-20338
-
-
Kalsotra, A.1
Xiao, X.2
Ward, A.J.3
Castle, J.C.4
Johnson, J.M.5
Burge, C.B.6
Cooper, T.A.7
-
37
-
-
0031149756
-
An analysis of alternatively spliced CD45 mRNA transcripts during T cell maturation in humans
-
DOI 10.1006/cimm.1997.1111
-
Ratech,H., Denning,S. and Kaufman,R.E. (1997) An analysis of alternatively spliced CD45 mRNA transcripts during T cell maturation in humans. Cell Immunol., 177, 109-118. (Pubitemid 27244264)
-
(1997)
Cellular Immunology
, vol.177
, Issue.2
, pp. 109-118
-
-
Ratech, H.1
Denning, S.2
Kaufman, R.E.3
-
38
-
-
0345276470
-
A conserved signal-responsive sequence mediates activation-induced alternative splicing of CD45
-
DOI 10.1016/S1097-2765(03)00434-9
-
Rothrock,C., Cannon,B., Hahm,B. and Lynch,K.W. (2003) A conserved signal-responsive sequence mediates activation-induced alternative splicing of CD45. Mol. Cell, 12, 1317-1324. (Pubitemid 37487938)
-
(2003)
Molecular Cell
, vol.12
, Issue.5
, pp. 1317-1324
-
-
Rothrock, C.1
Cannon, B.2
Hahm, B.3
Lynch, K.W.4
-
39
-
-
77957377260
-
Phosphorylation-dependent regulation of PSF by GSK3 controls CD45 alternative splicing
-
Heyd,F. and Lynch,K.W. (2010) Phosphorylation-dependent regulation of PSF by GSK3 controls CD45 alternative splicing. Mol. Cell, 40, 126-137.
-
(2010)
Mol. Cell
, vol.40
, pp. 126-137
-
-
Heyd, F.1
Lynch, K.W.2
|