Energetics of lipid binding in a hydrophobic protein cavity

Journal of the American Chemical Society

Volumn 134, Issue 6, 2012, Pages 3054-3060

  Liu, Lan ^a   Michelsen, Klaus ^b   Kitova, Elena N ^a   Schnier, Paul D ^b   Klassen, John S ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b AMGEN INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

1-BUTANOL; ARRHENIUS PARAMETERS; BIOCHEMICAL PROCESS; CHARGE STATE; DIELECTRIC CONSTANTS; GASPHASE; HYDROPHOBIC BONDING; HYDROPHOBIC INTERACTIONS; HYDROPHOBIC PROTEIN; LACTOGLOBULIN; LIPID BINDING; LIPID-BINDING PROTEINS; METHYL GROUP; N ,N-DIMETHYLFORMAMIDE; NON-POLAR SOLVENTS; POLAR SOLVENTS; PROTEIN-LIPID INTERACTIONS; SOLVENT ENVIRONMENTS;

ACETONE; ACTIVATION ENERGY; ASSOCIATION REACTIONS; DIMETHYLFORMAMIDE; DISSOCIATION; FUNCTIONAL GROUPS; GASES; HYDROCARBONS; HYDROPHOBICITY; IONS; ORGANIC SOLVENTS; PROTEIN FOLDING; SOLVENTS; UNSATURATED FATTY ACIDS;

PROTEINS;

ACETONE; BETA LACTOGLOBULIN; CYCLOHEXANE; FATTY ACID; HYDROCARBON; LIGAND; LIPID; N,N DIMETHYLFORMAMIDE; ORGANIC SOLVENT; PROTEIN;

ARTICLE; DIELECTRIC CONSTANT; ENERGY TRANSFER; ENTHALPY; GAS; HYDROPHOBICITY; MASS SPECTROMETRY; MOLECULAR DYNAMICS; PHYSICAL PHASE; PROTEIN LIPID INTERACTION; SURFACE PLASMON RESONANCE;

ACETONE; ANIMALS; CARBON; CATTLE; FATTY ACIDS; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; IONS; LACTOGLOBULINS; LIGANDS; LIPIDS; MODELS, CHEMICAL; PROTEIN BINDING; PROTEIN FOLDING; PROTEINS; SOLVENTS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SURFACE PLASMON RESONANCE; WATER;

EID: 84863138340     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja208909n     Document Type: Article

References (52)

1. Tanford, C. Science 1978, 200, 1012-1018
2. Tanford, C. Protein Sci. 1997, 6, 1358-1366
3. Pace, C. N.; Shirley, B. A.; McNutt, M.; Gajiwala, K. FASEB J. 1996, 10, 75-83
4. Efremov, R. G.; Chugunov, A. O.; Pyrkov, T. V.; Priestle, J. P.; Arseniev, A. S.; Jacoby, E. Curr. Med. Chem. 2007, 14, 393-415
5. Meyer, E. E.; Rosenberg, K. J.; Israelachvili, J. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 15739-15746
6. Southall, N. T.; Dill, K. A.; Haymet, A. D. J. Phys. Chem. B. 2002, 106, 521-533
7. Lazaridis, T. Acc. Chem. Res. 2001, 34, 931-937
8. Southall, N. T.; Dill, K. A. J. Phys. Chem. B 2000, 104, 1326-1331
9. Mondal, J.; Yethiraj, A. J. Phys. Chem. Lett. 2011, 2, 2391-2395
10. Snyder, P. W.; Mecinović, J.; Moustakas, D. T.; Thomas, S. W., III; Harder, M.; Mack, E. T.; Lockett, M. R.; Héroux, A.; Sherman, W.; Whitesides, G. M. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 17889-17894
11. Varilly, P.; Patel, A. J.; Chandler, D. J. Chem. Phys. 2011, 134, 074109
12. Dill, K. A.; Truskett, T. M.; Vlachy, V.; Hribar-Lee, B. Annu. Rev. Biophys. Biomol. Struct. 2005, 34, 173-199
13. Dill, K. A. J. Biol. Chem. 1997, 272, 701-704
14. Loo, J. A. Mass Spectrom. Rev. 1997, 16, 1-23
15. Li, Y.; Heitz, F.; Grimellec, C. L.; Cole, R. B. Anal. Chem. 2005, 77, 1556-1565
16. Stanley, W. A.; Versluis, K.; Schultz, C.; Heck, A. J. R.; Wilmanns, M. Arch. Biochem. Biophys. 2007, 461, 50-58
17. Barrera, N. P.; Bartolo, N. D.; Booth, P. J.; Robinson, C. V. Science 2008, 321, 243-246
18. Uetrecht, C.; Barbu, I. M.; Shoemaker, G. K.; van Duijn, E.; Heck, A. J. R. Nat. Chem. 2011, 3, 126-132
19. Liu, L.; Bagal, D.; Kitova, E. N.; Schnier, P. D.; Klassen, J. S. J. Am. Chem. Soc. 2009, 131, 15980-15981
20. Sun, J.; Kitova, E. N.; Klassen, J. S. Anal. Chem. 2007, 79, 416-425
21. Bagal, D.; Kitova, E. N.; Liu, L.; El-Hawiet, A.; Schnier, P. D.; Klassen, J. S. Anal. Chem. 2009, 81, 7801-7806
22. Benesch, J. L. P.; Sobott, F.; Robinson, C. V. Anal. Chem. 2003, 75, 2208-2214
23. Loo, J. A.; He, J. X.; Cody, W. L. J. Am. Chem. Soc. 1998, 120, 4542-4543
24. Rostom, A. A.; Fucini, P.; Benjamin, D. R.; Juenemann, R.; Nierhaus, K. H.; Hartl, F. U.; Dobson, C. M.; Robinson, C. V. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 5185-5190
25. van Duijn, E.; Simmons, D. A.; van den Heuvel, R. H.; Bakkes, P. J.; van Heerikhuizen, H.; Heeren, R. M.; Robinson, C. V.; van der Vies, S. M.; Heck, A. J. J. Am. Chem. Soc. 2006, 128, 4694-4702
26. van den Heuvel, R. H. H.; van Duijn., E.; Mazon, H.; Synowsky, S. A.; Lorenzen, K.; Versluis, C.; Brouns, S. J. J.; Langridge, D.; van der Oost, J.; Hoyes, J.; Heck, A. J. R. Anal. Chem. 2006, 78, 7473-7483
27. Wu, Q. Y.; Gao, J. M.; Joseph-McCarthy, D.; Sigal, G. B.; Bruce, J. E.; Whitesides, G. M.; Smith, R. D. J. Am. Chem. Soc. 1997, 119, 1157-1158
28. Benesch, J. L. P.; Aquilina, J. A.; Ruotolo, B. T.; Sobott, F.; Robinson, C. V. Chem. Biol. 2006, 13, 597-605
29. Shelimov, K. B.; Clemmer, D. E.; Hudgins, R. R.; Jarrold, M. F. J. Am. Chem. Soc. 1997, 119, 2240-2248
30. Robinson, E. W.; Leib, R. D.; Williams, E. R. J. Am. Soc. Mass Spectrom. 2006, 17, 1469-1479
31. Koeniger, S. L.; Merenbloom, S. I.; Sevugarajan, S.; Clemmer, D. E. J. Am. Chem. Soc. 2006, 128, 11713-11719
32. Ruotolo, B. T.; Giles, K.; Campuzano, I.; Sandercock, A. M.; Bateman, R. H.; Robinson, C. V. Science 2005, 310, 1658-1661
33. Bleiholder, C.; Dupuis, N. F.; Wyttenbach, T.; Bowers, M. T. Nat. Chem. 2011, 3, 172-177
34. Oomens, J.; Polfer, N.; Moore, D. T.; van der Meer, L.; Marshall, A. G.; Eyler, J. R.; Meijer, G.; von Helden, G. Phys. Chem. Chem. Phys. 2005, 7, 1345-1348
35. Compagnon, I.; Oomens, J.; Meijer, G.; von Helden, G. J. Am. Chem. Soc. 2006, 128, 3592-3597
36. Iavarone, A. T.; Parks, J. H. J. Am. Chem. Soc. 2005, 127, 8606-8607
37. Wu, S.-Y.; Perez, M. D.; Puyol, P.; Sawyer, L. J. Biol. Chem. 1999, 274, 170-174
38. Kontopidis, G.; Holt, C.; Sawyer, L. J. Dairy Sci. 2004, 87, 785-796
39. Qin, B. Y.; Bewley, M. C.; Creamer, L. K.; Baker, H. M.; Baker, E. N.; Jameson, G. B. Biochemistry 1998, 37, 14014-14023
40. Qvist, J.; Davidovic, M.; Hamelberg, D.; Halle, B. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 6296-6301
41. Kontopidis, G.; Holt, C.; Sawyer, L. J. Dairy Sci. 2004, 87, 785-796
42. Collini, M.; DAlfonso, L.; Molinari, H.; Ragona, L.; Catalaono, M.; Baldini, G. Protein Sci. 2003, 12, 1596-1603
43. Konuma, T.; Sakurai, K.; Goto, Y. J. Mol. Biol. 2007, 368, 209-218
44. Liu, L.; Kitova, E. N.; Klassen, J. S. J. Am. Soc. Mass Spectrom. 2011, 22, 310-318
45. Liu, L.; Michelsen, K.; Kitova, E. N.; Schnier, P. D.; Klassen, J. S. J. Am. Chem. Soc. 2010, 132, 17658-17660
46. Saluja, P. P. S; Young, T. M.; Rodewald, R. F.; Fuchs, F. H.; Kohli, D.; Fuchs, R. J. Am. Chem. Soc. 1977, 99, 2949-2953
47. Abraham, M. H. J. Am. Chem. Soc. 1982, 104, 2085-2094
48. Fuchs, R.; Stephenson, W. K. Can. J. Chem. 1985, 63, 349-352
49. Spirin, S.; Titov, M.; Karyagina, A.; Alexeevski, A. Bioinformatics 2007, 23, 3247-3248
50. Kontopidis, G.; Holt, C.; Sawyer, L. J. Mol. Biol. 2002, 318, 1043-1055
51. Dwyer, J. J.; Gittis, A. G.; Karp, D. A.; Lattman, E. E.; Spencer, D. S.; Stites, W. E.; Garcia-Moreno, B. E. Biophys. J. 2000, 79, 1610-1620
52. Isom, D. G.; Castaneda, C. A.; Cannon, B. R.; Velu, P. D.; Garcia-Moreno, B. E. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 16096-16100