메뉴 건너뛰기




Volumn 55, Issue 12, 2012, Pages 5784-5796

Dual inhibitors for aspartic proteases HIV-1 PR and renin: Advancements in AIDS-hypertension-diabetes linkage via Molecular dynamics, inhibition assays, and binding free energy calculations

Author keywords

[No Author keywords available]

Indexed keywords

ALISKIREN; CANAGLIFLOZIN; DARUNAVIR; HUMAN IMMUNODEFICIENCY VIRUS PROTEINASE; RENIN;

EID: 84863107521     PISSN: 00222623     EISSN: 15204804     Source Type: Journal    
DOI: 10.1021/jm300180r     Document Type: Article
Times cited : (38)

References (75)
  • 1
    • 84863098750 scopus 로고    scopus 로고
    • Source available at http://www.unaids.org/.
  • 3
    • 0038184354 scopus 로고    scopus 로고
    • HIV-1 protease: Mechanism and drug discovery
    • Brik, A.; Wong, C. H. HIV-1 protease: mechanism and drug discovery Org. Biomol. Chem. 2003, 1, 5-14
    • (2003) Org. Biomol. Chem. , vol.1 , pp. 5-14
    • Brik, A.1    Wong, C.H.2
  • 4
  • 5
    • 33745845825 scopus 로고    scopus 로고
    • Physiology of local renin-angiotensin systems
    • Paul, M.; Poyan Mehr, A.; Kreutz, R. Physiology of local renin-angiotensin systems Physiol Rev. 2006, 86, 747-803
    • (2006) Physiol Rev. , vol.86 , pp. 747-803
    • Paul, M.1    Poyan Mehr, A.2    Kreutz, R.3
  • 6
    • 0023189241 scopus 로고
    • Inhibitors of renin as potential therapeutic agents
    • Wood, J. M.; Stanton, J. L.; Hofbauer, K. G. Inhibitors of renin as potential therapeutic agents J. Enzyme Inhib. 1987, 1, 169-185
    • (1987) J. Enzyme Inhib. , vol.1 , pp. 169-185
    • Wood, J.M.1    Stanton, J.L.2    Hofbauer, K.G.3
  • 9
    • 0036147844 scopus 로고    scopus 로고
    • Rapid structural fluctuations of the free HIV protease flaps in solution: Relationship to crystal structures and comparison with predictions of dynamics calculations
    • Freedberg, D. I.; Ishima, R.; Jacob, J.; Wang, Y. X.; Kustanovich, I.; Louis, J. M.; Torchia, D. A. Rapid structural fluctuations of the free HIV protease flaps in solution: Relationship to crystal structures and comparison with predictions of dynamics calculations Protein Sci. 2002, 11, 221-232
    • (2002) Protein Sci. , vol.11 , pp. 221-232
    • Freedberg, D.I.1    Ishima, R.2    Jacob, J.3    Wang, Y.X.4    Kustanovich, I.5    Louis, J.M.6    Torchia, D.A.7
  • 10
    • 32244437816 scopus 로고    scopus 로고
    • HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations
    • Hornak, V.; Okur, A.; Rizzo, R. C.; Simmerling, C. HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 915-920
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 915-920
    • Hornak, V.1    Okur, A.2    Rizzo, R.C.3    Simmerling, C.4
  • 11
    • 33644948688 scopus 로고    scopus 로고
    • HIV-1 protease flaps spontaneously close to the correct structure in simulations following manual placement of an inhibitor into the open state
    • Hornak, V.; Okur, A.; Rizzo, R. C.; Simmerling, C. HIV-1 protease flaps spontaneously close to the correct structure in simulations following manual placement of an inhibitor into the open state J. Am. Chem. Soc. 2006, 128 (9) 2812-2813
    • (2006) J. Am. Chem. Soc. , vol.128 , Issue.9 , pp. 2812-2813
    • Hornak, V.1    Okur, A.2    Rizzo, R.C.3    Simmerling, C.4
  • 13
    • 0026323860 scopus 로고
    • The crystal structures of recombinant glycosylated human renin alone and in complex with a transition state analog inhibitor
    • Rahuel, J.; Priestle, P.; Grutter, M. G. The crystal structures of recombinant glycosylated human renin alone and in complex with a transition state analog inhibitor J. Struct. Biol. 1991, 107, 227-236
    • (1991) J. Struct. Biol. , vol.107 , pp. 227-236
    • Rahuel, J.1    Priestle, P.2    Grutter, M.G.3
  • 14
    • 42949109643 scopus 로고    scopus 로고
    • Aliskiren: The first renin inhibitor for clinical treatment
    • Jensen, C.; Herold, P.; Brunner, H. R. Aliskiren: the first renin inhibitor for clinical treatment Nat. Rev. Drug Discovery 2008, 7, 399-410
    • (2008) Nat. Rev. Drug Discovery , vol.7 , pp. 399-410
    • Jensen, C.1    Herold, P.2    Brunner, H.R.3
  • 15
    • 0025940648 scopus 로고
    • Could angiotensin i be produced from a renin substrate by the HIV-I protease?
    • Sharma, K. S.; Evans, D. B.; Hui, J. O.; Henrikson, R. L. Could angiotensin i be produced from a renin substrate by the HIV-I protease? Anal. Biochem. 1991, 198, 363-367
    • (1991) Anal. Biochem. , vol.198 , pp. 363-367
    • Sharma, K.S.1    Evans, D.B.2    Hui, J.O.3    Henrikson, R.L.4
  • 17
    • 0036892381 scopus 로고    scopus 로고
    • HIVdb: A database of the structures of human immunodeficiency virus protease
    • Vondrasek, J.; Wlodawer, A. HIVdb: a database of the structures of human immunodeficiency virus protease Proteins 2002, 49, 429-431
    • (2002) Proteins , vol.49 , pp. 429-431
    • Vondrasek, J.1    Wlodawer, A.2
  • 21
    • 77957875612 scopus 로고    scopus 로고
    • Discovery and optimization of a new class of potent and non-chiral indole-3-carboxamide-based renin inhibitors
    • Scheiper, B.; Matter, H.; Steinhagen, H.; Stilz, U.; Böcskei, Z.; Fleury, V.; McCort, G. Discovery and optimization of a new class of potent and non-chiral indole-3-carboxamide-based renin inhibitors Bioorg. Med. Chem. Lett. 2010, 20, 6268-6272
    • (2010) Bioorg. Med. Chem. Lett. , vol.20 , pp. 6268-6272
    • Scheiper, B.1    Matter, H.2    Steinhagen, H.3    Stilz, U.4    Böcskei, Z.5    Fleury, V.6    McCort, G.7
  • 22
    • 0031180937 scopus 로고    scopus 로고
    • Prediction of ligand-receptor binding thermodynamics by free energy force field (FEFF) 3D-QSAR analysis: Application to a set of peptidometic renin inhibitors
    • Tokarski, J. S.; Hopfinger, A. J. Prediction of ligand-receptor binding thermodynamics by free energy force field (FEFF) 3D-QSAR analysis: application to a set of peptidometic renin inhibitors J. Chem. Inf. Comput. Sci. 1997, 37, 779-791
    • (1997) J. Chem. Inf. Comput. Sci. , vol.37 , pp. 779-791
    • Tokarski, J.S.1    Hopfinger, A.J.2
  • 23
    • 42449147045 scopus 로고    scopus 로고
    • Evaluating the potency of HIV-1 protease drugs to combat resistance
    • Hou, T.; McLaughlin, W. A.; Wang, W. Evaluating the potency of HIV-1 protease drugs to combat resistance Proteins 2008, 71, 1163-1174
    • (2008) Proteins , vol.71 , pp. 1163-1174
    • Hou, T.1    McLaughlin, W.A.2    Wang, W.3
  • 24
    • 0026005186 scopus 로고
    • Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism
    • Hyland, L. J.; Tomaszek, T. A., Jr.; Meek, T. D. Human immunodeficiency virus-1 protease. 2. Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism Biochemistry 1991, 30, 8454-8463
    • (1991) Biochemistry , vol.30 , pp. 8454-8463
    • Hyland, L.J.1    Tomaszek Jr., T.A.2    Meek, T.D.3
  • 25
    • 69049084558 scopus 로고    scopus 로고
    • Substrate binding mechanism of HIV-1 protease from explicit-solvent atomistic simulations
    • Pietrucci, F.; Marinelli, F.; Carloni, P.; Laio, A. Substrate binding mechanism of HIV-1 protease from explicit-solvent atomistic simulations J. Am. Chem. Soc. 2009, 131, 11811-11818
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 11811-11818
    • Pietrucci, F.1    Marinelli, F.2    Carloni, P.3    Laio, A.4
  • 26
    • 84855196452 scopus 로고    scopus 로고
    • Binding of novel fullerene inhibitors to HIV-1 protease: Insight through molecular dynamics and molecular mechanics Poisson - Boltzmann surface area calculations
    • Tzoupis, H.; Leonis, G.; Durdagi, S.; Mouchlis, V.; Mavromoustakos, T.; Papadopoulos, M. G. Binding of novel fullerene inhibitors to HIV-1 protease: insight through molecular dynamics and molecular mechanics Poisson - Boltzmann surface area calculations J. Comput.-Aided Mol. Des. 2011, 25, 959-976
    • (2011) J. Comput.-Aided Mol. Des. , vol.25 , pp. 959-976
    • Tzoupis, H.1    Leonis, G.2    Durdagi, S.3    Mouchlis, V.4    Mavromoustakos, T.5    Papadopoulos, M.G.6
  • 28
    • 79957875480 scopus 로고    scopus 로고
    • http://clinicaltrials.gov/ct2/show/NCT01064414 InsightPharma: Langhorne
    • Diabetes Pipeline: Intense Activity to Meet Unmet Need; InsightPharma: Langhorne, PA, 2010; p. vii. http://www.insightpharmareports.com/uploadedFiles/ ExecutiveSummary.pdf.; http://clinicaltrials.gov/ct2/show/NCT01064414.
    • (2010) Diabetes Pipeline: Intense Activity to Meet Unmet Need
  • 33
    • 33748955158 scopus 로고    scopus 로고
    • Ultra-high resolution crystal structure of HIV-1 protease mutant reveals two binding sites for clinical inhibitor TMC114
    • Kovalevsky, A. Y.; Liu, F.; Leshchenko, S.; Ghosh, A. K.; Louis, J. M.; Harrison, R. W.; Weber, I. T. Ultra-high resolution crystal structure of HIV-1 protease mutant reveals two binding sites for clinical inhibitor TMC114 J. Mol. Biol. 2006, 363, 161-173
    • (2006) J. Mol. Biol. , vol.363 , pp. 161-173
    • Kovalevsky, A.Y.1    Liu, F.2    Leshchenko, S.3    Ghosh, A.K.4    Louis, J.M.5    Harrison, R.W.6    Weber, I.T.7
  • 34
    • 55049134097 scopus 로고    scopus 로고
    • Resilience to resistance of HIV-1 protease inhibitors: Profile of darunavir
    • Lefebvre, E.; Schiffer, C. A. Resilience to resistance of HIV-1 protease inhibitors: profile of darunavir AIDS Rev. 2008, 10, 131-142
    • (2008) AIDS Rev. , vol.10 , pp. 131-142
    • Lefebvre, E.1    Schiffer, C.A.2
  • 35
    • 11144354478 scopus 로고    scopus 로고
    • High resolution crystal structures of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) active against multidrug-resistant clinical strains
    • Tie, Y.; Boross, P. I.; Wang, Y. F.; Gaddis, L.; Hussain, A. K.; Leshchenko, S.; Ghosh, A. K.; Louis, J. M.; Harrison, R. W.; Weber, I. T. High resolution crystal structures of HIV-1 protease with a potent non-peptide inhibitor (UIC-94017) active against multidrug-resistant clinical strains J. Mol. Biol. 2004, 338, 341-352
    • (2004) J. Mol. Biol. , vol.338 , pp. 341-352
    • Tie, Y.1    Boross, P.I.2    Wang, Y.F.3    Gaddis, L.4    Hussain, A.K.5    Leshchenko, S.6    Ghosh, A.K.7    Louis, J.M.8    Harrison, R.W.9    Weber, I.T.10
  • 36
    • 38949203748 scopus 로고    scopus 로고
    • Design of protease inhibitors targeting protein backbone: An effective strategy for combating drug resistance
    • Ghosh, A. K.; Chapsal, B. D.; Weber, I. T.; Mitsuya, H. Design of protease inhibitors targeting protein backbone: an effective strategy for combating drug resistance Acc. Chem. Res. 2008, 41, 78-86
    • (2008) Acc. Chem. Res. , vol.41 , pp. 78-86
    • Ghosh, A.K.1    Chapsal, B.D.2    Weber, I.T.3    Mitsuya, H.4
  • 38
    • 0034979318 scopus 로고    scopus 로고
    • Biomolecular simulations: Recent developments in force fields, simulations of enzyme catalysis, protein - Ligand, protein - Protein, and protein - Nucleic acid noncovalent interactions
    • Wang, W.; Donini, O.; Reyes, C. M.; Kollman, P. A. Biomolecular simulations: recent developments in force fields, simulations of enzyme catalysis, protein - ligand, protein - protein, and protein - nucleic acid noncovalent interactions Annu. Rev. Biophys. Biomol. Struct. 2001, 30, 211-243
    • (2001) Annu. Rev. Biophys. Biomol. Struct. , vol.30 , pp. 211-243
    • Wang, W.1    Donini, O.2    Reyes, C.M.3    Kollman, P.A.4
  • 39
    • 22544456941 scopus 로고    scopus 로고
    • Peptide recognition by the T cell receptor: Comparison of binding free energies from thermodynamic integration, Poisson - Boltzmann and linear interaction energy approximations
    • Wan, S.; Coveney, P. V.; Flower, D. R. Peptide recognition by the T cell receptor: comparison of binding free energies from thermodynamic integration, Poisson - Boltzmann and linear interaction energy approximations Philos. Trans. R. Soc., A 2005, 363, 2037-2053
    • (2005) Philos. Trans. R. Soc., A , vol.363 , pp. 2037-2053
    • Wan, S.1    Coveney, P.V.2    Flower, D.R.3
  • 40
    • 1642357706 scopus 로고    scopus 로고
    • The Many Roles of Computation in Drug Discovery
    • Jorgensen, W. L. The Many Roles of Computation in Drug Discovery Science 2004, 303, 1813-1818
    • (2004) Science , vol.303 , pp. 1813-1818
    • Jorgensen, W.L.1
  • 41
    • 0035910029 scopus 로고    scopus 로고
    • Computational study of protein specificity: The molecular basis of HIV-1 protease drug resistance
    • Wang, W.; Kollman, P. A. Computational study of protein specificity: The molecular basis of HIV-1 protease drug resistance Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 14937-14942
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 14937-14942
    • Wang, W.1    Kollman, P.A.2
  • 42
    • 33748442331 scopus 로고    scopus 로고
    • A computational analysis of the binding affinities of FKBP12 inhibitors using the MM-PB/SA method
    • Xu, Y.; Wang, R. A computational analysis of the binding affinities of FKBP12 inhibitors using the MM-PB/SA method Proteins 2006, 64, 1058-1068
    • (2006) Proteins , vol.64 , pp. 1058-1068
    • Xu, Y.1    Wang, R.2
  • 43
    • 0043245780 scopus 로고    scopus 로고
    • Insights into protein - Protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RaIGDS complexes
    • Gohlke, H.; Kiel, C.; Case, D. A. Insights into protein - protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RaIGDS complexes J. Mol. Biol. 2003, 330, 891-913
    • (2003) J. Mol. Biol. , vol.330 , pp. 891-913
    • Gohlke, H.1    Kiel, C.2    Case, D.A.3
  • 44
    • 0031804609 scopus 로고    scopus 로고
    • Inhibitors of HIV-1 protease: A major success of structure-assisted drug design
    • Wlodawer, A.; Vondrasek, J. Inhibitors of HIV-1 protease: a major success of structure-assisted drug design Annu. Rev. Biophys. Biomol. Struct. 1998, 27, 249-284
    • (1998) Annu. Rev. Biophys. Biomol. Struct. , vol.27 , pp. 249-284
    • Wlodawer, A.1    Vondrasek, J.2
  • 45
    • 0034718193 scopus 로고    scopus 로고
    • Metformin in the treatment of HIV lipodystrophy syndrome: A randomized controlled trial
    • Hadigan, C.; Corcoran, C.; Basgoz, N.; Davis, B.; Sax, P.; Grinspoon, S. Metformin in the treatment of HIV lipodystrophy syndrome: a randomized controlled trial JAMA 2000, 284 (4) 472-477
    • (2000) JAMA , vol.284 , Issue.4 , pp. 472-477
    • Hadigan, C.1    Corcoran, C.2    Basgoz, N.3    Davis, B.4    Sax, P.5    Grinspoon, S.6
  • 47
    • 10044231525 scopus 로고    scopus 로고
    • Case-control study of diabetes mellitus in HIV-infected patients
    • Yoon, C.; Gulick, R. M.; Hoover, D. R.; Vaamonde, C. M.; Glesby, M. J. Case-control study of diabetes mellitus in HIV-infected patients JAIDS 2004, 37 (4) 1464-1470
    • (2004) JAIDS , vol.37 , Issue.4 , pp. 1464-1470
    • Yoon, C.1    Gulick, R.M.2    Hoover, D.R.3    Vaamonde, C.M.4    Glesby, M.J.5
  • 48
    • 0346992125 scopus 로고    scopus 로고
    • Prevalence of hypertension in HIV-positive patients on highly active retroviral therapy (HAART) compared with HAART-naive and HIV-negative controls: Results from a Norwegian study of 721 patients
    • Bergersen, B. M.; Sandvik, L.; Dunlop, O.; Birkeland, K.; Bruun, J. N. Prevalence of hypertension in HIV-positive patients on highly active retroviral therapy (HAART) compared with HAART-naive and HIV-negative controls: Results from a Norwegian study of 721 patients Eur. J. Clin. Microbiol. Infect. Dis. 2003, 22, 731-736
    • (2003) Eur. J. Clin. Microbiol. Infect. Dis. , vol.22 , pp. 731-736
    • Bergersen, B.M.1    Sandvik, L.2    Dunlop, O.3    Birkeland, K.4    Bruun, J.N.5
  • 49
    • 20644450805 scopus 로고    scopus 로고
    • Association between highly active antiretroviral therapy and hypertension in a large cohort of men followed from 1984 to 2003
    • Seaberg, E. C.; Munoz, A.; Lu, M; Detels, R; Margolick, J. B.; Riddler, S. A.; Williams, C. M.; Phair, J. P. Association between highly active antiretroviral therapy and hypertension in a large cohort of men followed from 1984 to 2003 AIDS 2005, 19 (9) 953-960
    • (2005) AIDS , vol.19 , Issue.9 , pp. 953-960
    • Seaberg, E.C.1    Munoz, A.2    Lu, M.3    Detels, R.4    Margolick, J.B.5    Riddler, S.A.6    Williams, C.M.7    Phair, J.P.8
  • 51
    • 33748538349 scopus 로고    scopus 로고
    • Automatic atom type and bond type perception in molecular mechanical calculations
    • Wang, J.; Wang, W.; Kollman, P. A.; Case, D. A. Automatic atom type and bond type perception in molecular mechanical calculations J. Mol. Graphics Modell. 2006, 25, 247-260
    • (2006) J. Mol. Graphics Modell. , vol.25 , pp. 247-260
    • Wang, J.1    Wang, W.2    Kollman, P.A.3    Case, D.A.4
  • 53
    • 0001041959 scopus 로고    scopus 로고
    • Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method
    • Jakalian, A.; Bush, B. L.; Jack, D. B.; Bayly, C. I. Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method J. Comput. Chem. 2000, 21, 132-146
    • (2000) J. Comput. Chem. , vol.21 , pp. 132-146
    • Jakalian, A.1    Bush, B.L.2    Jack, D.B.3    Bayly, C.I.4
  • 54
    • 0036890178 scopus 로고    scopus 로고
    • Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation
    • Jakalian, A.; Jack, D. B.; Bayly, C. I. Fast, efficient generation of high-quality atomic charges. AM1-BCC model: II. Parameterization and validation J. Comput. Chem. 2002, 23, 1623-1641
    • (2002) J. Comput. Chem. , vol.23 , pp. 1623-1641
    • Jakalian, A.1    Jack, D.B.2    Bayly, C.I.3
  • 55
    • 84986432941 scopus 로고
    • Automated docking with grid-based energy evaluation
    • Meng, E. C.; Shoichet, B. K.; Kuntz, I. D. Automated docking with grid-based energy evaluation J. Comput. Chem. 1992, 13, 505-524
    • (1992) J. Comput. Chem. , vol.13 , pp. 505-524
    • Meng, E.C.1    Shoichet, B.K.2    Kuntz, I.D.3
  • 56
    • 84986518987 scopus 로고
    • Molecular docking using shape descriptors
    • Shoichet, B. K.; Bodian, D. L.; Kuntz, I. D. Molecular docking using shape descriptors J. Comput. Chem. 1992, 13 (3) 380-397
    • (1992) J. Comput. Chem. , vol.13 , Issue.3 , pp. 380-397
    • Shoichet, B.K.1    Bodian, D.L.2    Kuntz, I.D.3
  • 60
    • 33748518255 scopus 로고    scopus 로고
    • Comparison of multiple Amber force fields and development of improved protein backbone parameters
    • Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.; Simmerling, C. Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins 2006, 65 (3) 712-725
    • (2006) Proteins , vol.65 , Issue.3 , pp. 712-725
    • Hornak, V.1    Abel, R.2    Okur, A.3    Strockbine, B.4    Roitberg, A.5    Simmerling, C.6
  • 62
    • 0004016501 scopus 로고
    • Comparison of simple potential functions for simulationg liquid water
    • Jorgensen, W. L.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of simple potential functions for simulationg liquid water J. Chem. Phys. 1983, 79, 926-935
    • (1983) J. Chem. Phys. , vol.79 , pp. 926-935
    • Jorgensen, W.L.1    Madura, J.D.2    Impey, R.W.3    Klein, M.L.4
  • 63
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An N.Log(N) method for Ewald sums in large systems
    • Darden, T.; York, D.; Pedersen, L. Particle mesh Ewald: an N.Log(N) method for Ewald sums in large systems J. Chem. Phys. 1993, 98, 10089-10092
    • (1993) J. Chem. Phys. , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 65
    • 33646940952 scopus 로고
    • Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J.-P.; Ciccotti, G.; Berendsen, H. J. C. Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes J. Comput. Phys. 1977, 23, 327-341
    • (1977) J. Comput. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 66
    • 0029016182 scopus 로고
    • Classical electrostatics in biology and chemistry
    • Honig, B.; Nichols, A. Classical electrostatics in biology and chemistry Science 1995, 268, 1144-1149
    • (1995) Science , vol.268 , pp. 1144-1149
    • Honig, B.1    Nichols, A.2
  • 67
    • 0000408363 scopus 로고    scopus 로고
    • Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO)
    • Weiser, J.; Shenkin, P. S.; Still, W. C. Approximate atomic surfaces from linear combinations of pairwise overlaps (LCPO) J. Comput. Chem. 1999, 20, 217-230
    • (1999) J. Comput. Chem. , vol.20 , pp. 217-230
    • Weiser, J.1    Shenkin, P.S.2    Still, W.C.3
  • 68
    • 79952588669 scopus 로고    scopus 로고
    • Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The Accuracy of binding free energy calculations based on molecular dynamics simulations
    • Hou, T.; Wang, J.; Li, Y.; Wang., W. Assessing the performance of the MM/PBSA and MM/GBSA methods. 1. The Accuracy of binding free energy calculations based on molecular dynamics simulations J. Chem. Inf. Model. 2011, 51, 69-82
    • (2011) J. Chem. Inf. Model. , vol.51 , pp. 69-82
    • Hou, T.1    Wang, J.2    Li, Y.3    Wang, W.4
  • 72
    • 0018699952 scopus 로고
    • The kinetics of reversible tight-binding inhibition
    • Williams, J. W.; Morrison, J. F. The kinetics of reversible tight-binding inhibition Methods Enzymol. 1979, 63, 437-467
    • (1979) Methods Enzymol. , vol.63 , pp. 437-467
    • Williams, J.W.1    Morrison, J.F.2
  • 73
    • 0015861774 scopus 로고
    • Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50% inhibition (I50) of an enzymatic reaction
    • Cheng, Y.; Prusoff, W. H. Relationship between the inhibition constant (K1) and the concentration of inhibitor which causes 50% inhibition (I50) of an enzymatic reaction Biochem. Pharmacol. 1973, 22 (23) 3099-3108
    • (1973) Biochem. Pharmacol. , vol.22 , Issue.23 , pp. 3099-3108
    • Cheng, Y.1    Prusoff, W.H.2
  • 74
    • 0034647235 scopus 로고    scopus 로고
    • Molecular dynamics study of HIV-1 protease-substrate complex: Roles of the water molecules at the loop structures of the active site
    • Okimoto, N.; Tsukui, T.; Kitayama, K.; Hata, M.; Hoshino, T.; Tsuda, M. Molecular dynamics study of HIV-1 protease-substrate complex: Roles of the water molecules at the loop structures of the active site J. Am. Chem. Soc. 2000, 122, 5613-5622
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 5613-5622
    • Okimoto, N.1    Tsukui, T.2    Kitayama, K.3    Hata, M.4    Hoshino, T.5    Tsuda, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.