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Volumn 7, Issue 6, 2012, Pages

Genome-wide bovine H3K27me3 modifications and the regulatory effects on genes expressions in peripheral blood lymphocytes

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3; LYSINE; PROTEIN H3K27ME3; UNCLASSIFIED DRUG;

EID: 84862988654     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0039094     Document Type: Article
Times cited : (14)

References (51)
  • 1
    • 33748092868 scopus 로고    scopus 로고
    • Survival rates and productive herd life of dairy cattle in the United States
    • Hare E, Norman HD, Wright JR, (2006) Survival rates and productive herd life of dairy cattle in the United States. J Dairy Sci 89: 3713-3720.
    • (2006) J Dairy Sci , vol.89 , pp. 3713-3720
    • Hare, E.1    Norman, H.D.2    Wright, J.R.3
  • 2
    • 15044348265 scopus 로고    scopus 로고
    • Assessment of the impact of somatic cell count on functional longevity in Holstein and Jersey cattle using survival analysis methodology
    • Caraviello DZ, Weigel KA, Shook GE, Ruegg PL, (2005) Assessment of the impact of somatic cell count on functional longevity in Holstein and Jersey cattle using survival analysis methodology. J Dairy Sci 88: 804-811.
    • (2005) J Dairy Sci , vol.88 , pp. 804-811
    • Caraviello, D.Z.1    Weigel, K.A.2    Shook, G.E.3    Ruegg, P.L.4
  • 3
    • 68149141088 scopus 로고    scopus 로고
    • Lifetime risk and cost of clinical mastitis in dairy cows in relation to heifer rearing conditions in southwest Sweden
    • Hultgren J, Svensson C, (2009) Lifetime risk and cost of clinical mastitis in dairy cows in relation to heifer rearing conditions in southwest Sweden. J Dairy Sci 92: 3274-3280.
    • (2009) J Dairy Sci , vol.92 , pp. 3274-3280
    • Hultgren, J.1    Svensson, C.2
  • 4
    • 64949129507 scopus 로고    scopus 로고
    • Heifer rearing conditions affect length of productive life in Swedish dairy cows
    • Hultgren J, Svensson C, (2009) Heifer rearing conditions affect length of productive life in Swedish dairy cows. Prev Vet Med 89: 255-264.
    • (2009) Prev Vet Med , vol.89 , pp. 255-264
    • Hultgren, J.1    Svensson, C.2
  • 6
    • 0034691850 scopus 로고    scopus 로고
    • Relationship between milk somatic-cell counts in the first lactation and clinical mastitis occurrence in the second lactation of French Holstein cows
    • Rupp R, Beaudeau F, Boichard D, (2000) Relationship between milk somatic-cell counts in the first lactation and clinical mastitis occurrence in the second lactation of French Holstein cows. Prev Vet Med 46: 99-111.
    • (2000) Prev Vet Med , vol.46 , pp. 99-111
    • Rupp, R.1    Beaudeau, F.2    Boichard, D.3
  • 7
    • 0034302357 scopus 로고    scopus 로고
    • Longitudinal evaluation of CD4+ and CD8+ peripheral blood and mammary gland lymphocytes in cows experimentally inoculated with Staphylococcus aureus
    • Rivas AL, Quimby FW, Coksaygan O, Olmstead L, Lein DH, (2000) Longitudinal evaluation of CD4+ and CD8+ peripheral blood and mammary gland lymphocytes in cows experimentally inoculated with Staphylococcus aureus. Can J Vet Res 64: 232-237.
    • (2000) Can J Vet Res , vol.64 , pp. 232-237
    • Rivas, A.L.1    Quimby, F.W.2    Coksaygan, O.3    Olmstead, L.4    Lein, D.H.5
  • 8
    • 77951487590 scopus 로고    scopus 로고
    • Effect of parity on lymphocytes in peripheral blood and colostrum of healthy Holstein dairy cows
    • Ohtsuka H, Terasawa S, Watanabe C, Kohiruimaki M, Mukai M, et al. (2010) Effect of parity on lymphocytes in peripheral blood and colostrum of healthy Holstein dairy cows. Can J Vet Res 74: 130-135.
    • (2010) Can J Vet Res , vol.74 , pp. 130-135
    • Ohtsuka, H.1    Terasawa, S.2    Watanabe, C.3    Kohiruimaki, M.4    Mukai, M.5
  • 9
    • 34547739708 scopus 로고    scopus 로고
    • Epigenetic flexibility underlying lineage choices in the adaptive immune system
    • Kioussis D, Georgopoulos K, (2007) Epigenetic flexibility underlying lineage choices in the adaptive immune system. Science 317: 620-622.
    • (2007) Science , vol.317 , pp. 620-622
    • Kioussis, D.1    Georgopoulos, K.2
  • 10
    • 0142058200 scopus 로고    scopus 로고
    • The spatial organization of centromeric heterochromatin during normal human lymphopoiesis: evidence for ontogenically determined spatial patterns
    • Alcobia I, Quina AS, Neves H, Clode N, Parreira L, (2003) The spatial organization of centromeric heterochromatin during normal human lymphopoiesis: evidence for ontogenically determined spatial patterns. Experimental Cell Research 290: 358-369.
    • (2003) Experimental Cell Research , vol.290 , pp. 358-369
    • Alcobia, I.1    Quina, A.S.2    Neves, H.3    Clode, N.4    Parreira, L.5
  • 11
    • 77953915915 scopus 로고    scopus 로고
    • Regulation of microRNA expression and abundance during lymphopoiesis
    • Kuchen S, Resch W, Yamane A, Kuo N, Li Z, et al. (2010) Regulation of microRNA expression and abundance during lymphopoiesis. Immunity 32: 828-839.
    • (2010) Immunity , vol.32 , pp. 828-839
    • Kuchen, S.1    Resch, W.2    Yamane, A.3    Kuo, N.4    Li, Z.5
  • 13
    • 84859620860 scopus 로고    scopus 로고
    • Global DNA Hypomethylation in Peripheral Blood Leukocytes as a Biomarker for Cancer Risk: A Meta- Analysis
    • Woo HD, Kim J, (2012) Global DNA Hypomethylation in Peripheral Blood Leukocytes as a Biomarker for Cancer Risk: A Meta- Analysis. PLoS ONE 7: e34615.
    • (2012) PLoS ONE , vol.7
    • Woo, H.D.1    Kim, J.2
  • 16
    • 0036532026 scopus 로고    scopus 로고
    • Histone modifications in transcriptional regulation
    • Berger SL, (2002) Histone modifications in transcriptional regulation. Current Opinion in Genetics & Development 12: 142-148.
    • (2002) Current Opinion in Genetics & Development , vol.12 , pp. 142-148
    • Berger, S.L.1
  • 17
    • 81555214034 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans
    • Greer EL, Maures TJ, Ucar D, Hauswirth AG, Mancini E, et al. (2011) Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans. Nature 479: 365-371.
    • (2011) Nature , vol.479 , pp. 365-371
    • Greer, E.L.1    Maures, T.J.2    Ucar, D.3    Hauswirth, A.G.4    Mancini, E.5
  • 18
    • 80053217575 scopus 로고    scopus 로고
    • ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
    • Young MD, Willson TA, Wakefield MJ, Trounson E, Hilton DJ, et al. (2011) ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity. Nucleic Acids Res 39: 7415-7427.
    • (2011) Nucleic Acids Res , vol.39 , pp. 7415-7427
    • Young, M.D.1    Willson, T.A.2    Wakefield, M.J.3    Trounson, E.4    Hilton, D.J.5
  • 19
    • 66749172219 scopus 로고    scopus 로고
    • Promoter CpG island hypermethylation- and H3K9me3 and H3K27me3-mediated epigenetic silencing targets the deleted in colon cancer (DCC) gene in colorectal carcinogenesis without affecting neighboring genes on chromosomal region 18q21
    • Derks S, Bosch LJ, Niessen HE, Moerkerk PT, van den Bosch SM, et al. (2009) Promoter CpG island hypermethylation- and H3K9me3 and H3K27me3-mediated epigenetic silencing targets the deleted in colon cancer (DCC) gene in colorectal carcinogenesis without affecting neighboring genes on chromosomal region 18q21. Carcinogenesis 30: 1041-1048.
    • (2009) Carcinogenesis , vol.30 , pp. 1041-1048
    • Derks, S.1    Bosch, L.J.2    Niessen, H.E.3    Moerkerk, P.T.4    van den Bosch, S.M.5
  • 20
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837.
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5
  • 22
    • 77956502168 scopus 로고    scopus 로고
    • Nuclear Profiles of H3 Histones Trimethylated on Lys27 in Bovine (Bos taurus) Embryos Obtained after In Vitro Fertilization or Somatic Cell Nuclear Transfer
    • Breton A, Le Bourhis D, Audouard C, Vignon X, Lelievre JM, (2010) Nuclear Profiles of H3 Histones Trimethylated on Lys27 in Bovine (Bos taurus) Embryos Obtained after In Vitro Fertilization or Somatic Cell Nuclear Transfer. Journal of Reproduction and Development 56: 379-388.
    • (2010) Journal of Reproduction and Development , vol.56 , pp. 379-388
    • Breton, A.1    Le Bourhis, D.2    Audouard, C.3    Vignon, X.4    Lelievre, J.M.5
  • 23
    • 79952986645 scopus 로고    scopus 로고
    • Multiple histone site epigenetic modifications in nuclear transfer and in vitro fertilized bovine embryos
    • Yu HQ, Wu X, Li Y, Xue LA, Wang LL, et al. (2011) Multiple histone site epigenetic modifications in nuclear transfer and in vitro fertilized bovine embryos. Zygote 19: 31-45.
    • (2011) Zygote , vol.19 , pp. 31-45
    • Yu, H.Q.1    Wu, X.2    Li, Y.3    Xue, L.A.4    Wang, L.L.5
  • 25
    • 58149214356 scopus 로고    scopus 로고
    • Global Mapping of H3K4me3 and H3K27me3 Reveals Specificity and Plasticity in Lineage Fate Determination of Differentiating CD4(+) T Cells
    • Wei G, Wei L, Zhu JF, Zang CZ, Hu-Li J, et al. (2009) Global Mapping of H3K4me3 and H3K27me3 Reveals Specificity and Plasticity in Lineage Fate Determination of Differentiating CD4(+) T Cells. Immunity 30: 155-167.
    • (2009) Immunity , vol.30 , pp. 155-167
    • Wei, G.1    Wei, L.2    Zhu, J.F.3    Zang, C.Z.4    Hu-Li, J.5
  • 26
    • 38649126918 scopus 로고    scopus 로고
    • Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation
    • Fouse SD, Shen Y, Pellegrini M, Cole S, Meissner A, et al. (2008) Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation. Cell stem cell 2: 160-169.
    • (2008) Cell Stem Cell , vol.2 , pp. 160-169
    • Fouse, S.D.1    Shen, Y.2    Pellegrini, M.3    Cole, S.4    Meissner, A.5
  • 27
    • 34548434716 scopus 로고    scopus 로고
    • Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
    • Pan GJ, Tian SL, Nie J, Yang CH, Ruotti V, et al. (2007) Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell stem cell 1: 299-312.
    • (2007) Cell Stem Cell , vol.1 , pp. 299-312
    • Pan, G.J.1    Tian, S.L.2    Nie, J.3    Yang, C.H.4    Ruotti, V.5
  • 28
    • 60849117520 scopus 로고    scopus 로고
    • Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks
    • Nix DA, Courdy SJ, Boucher KM, (2008) Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks. Bmc Bioinformatics 9: 1-9.
    • (2008) Bmc Bioinformatics , vol.9 , pp. 1-9
    • Nix, D.A.1    Courdy, S.J.2    Boucher, K.M.3
  • 29
    • 80053952501 scopus 로고    scopus 로고
    • Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts
    • Szalkowski AM, Schmid CD, (2010) Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts. Briefings in Bioinformatics pp. 1-8.
    • (2010) Briefings in Bioinformatics , pp. 1-8
    • Szalkowski, A.M.1    Schmid, C.D.2
  • 30
    • 33646882068 scopus 로고    scopus 로고
    • Polycomb complexes repress developmental regulators in murine embryonic stem cells
    • Boyer LA, Plath K, Zeitlinger J, Brambrink T, Medeiros LA, et al. (2006) Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441: 349-353.
    • (2006) Nature , vol.441 , pp. 349-353
    • Boyer, L.A.1    Plath, K.2    Zeitlinger, J.3    Brambrink, T.4    Medeiros, L.A.5
  • 32
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides T, (2007) Chromatin modifications and their function. Cell 128: 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 33
    • 67651152840 scopus 로고    scopus 로고
    • Epigenetic regulation of cytokine gene expression in T lymphocytes
    • Lee CG, Sahoo A, Im SH, (2009) Epigenetic regulation of cytokine gene expression in T lymphocytes. Yonsei Med J 50: 322-330.
    • (2009) Yonsei Med J , vol.50 , pp. 322-330
    • Lee, C.G.1    Sahoo, A.2    Im, S.H.3
  • 35
    • 77952734936 scopus 로고    scopus 로고
    • High-throughput DNA sequencing-concepts and limitations
    • Kircher M, Kelso J, (2010) High-throughput DNA sequencing-concepts and limitations. Bioessays 32: 524-536.
    • (2010) Bioessays , vol.32 , pp. 524-536
    • Kircher, M.1    Kelso, J.2
  • 36
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • Johnson DS, Mortazavi A, Myers RM, Wold B, (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science 316: 1497-1502.
    • (2007) Science , vol.316 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 37
    • 37149032068 scopus 로고    scopus 로고
    • Effects of breed, feeding system, and parity on udder health and milking characteristics
    • Walsh S, Buckley F, Berry DP, Rath M, Pierce K, et al. (2007) Effects of breed, feeding system, and parity on udder health and milking characteristics. Journal of Dairy Science 90: 5767-5779.
    • (2007) Journal of Dairy Science , vol.90 , pp. 5767-5779
    • Walsh, S.1    Buckley, F.2    Berry, D.P.3    Rath, M.4    Pierce, K.5
  • 38
    • 42049099014 scopus 로고    scopus 로고
    • A study of somatic cell counts in the milk of Holstein-Friesian cows managed in Mediterranean climatic conditions
    • Koc A, (2008) A study of somatic cell counts in the milk of Holstein-Friesian cows managed in Mediterranean climatic conditions. Turkish Journal of Veterinary & Animal Sciences 32: 13-18.
    • (2008) Turkish Journal of Veterinary & Animal Sciences , vol.32 , pp. 13-18
    • Koc, A.1
  • 39
    • 48749127639 scopus 로고    scopus 로고
    • Milk losses associated with somatic cell counts per breed, parity and stage of lactation in Canadian dairy cattle
    • Dürr JW, Cue RI, Monardes HG, Moro-Méndez J, Wade KM, (2008) Milk losses associated with somatic cell counts per breed, parity and stage of lactation in Canadian dairy cattle. Livestock Science 117: 225-232.
    • (2008) Livestock Science , vol.117 , pp. 225-232
    • Dürr, J.W.1    Cue, R.I.2    Monardes, H.G.3    Moro-Méndez, J.4    Wade, K.M.5
  • 40
    • 62249126353 scopus 로고    scopus 로고
    • Study on the relationships between polymorphisms of CXCR2 gene and milk quality and mastitis of dairy cow
    • Xu M, Ping FQ, Chen SY, Lai SJ, Liu YP, (2008) Study on the relationships between polymorphisms of CXCR2 gene and milk quality and mastitis of dairy cow. Hereditas (China) 30: 463-468.
    • (2008) Hereditas (China) , vol.30 , pp. 463-468
    • Xu, M.1    Ping, F.Q.2    Chen, S.Y.3    Lai, S.J.4    Liu, Y.P.5
  • 41
    • 8744228195 scopus 로고    scopus 로고
    • Reduced beta-amyloid production and increased inflammatory responses in presenilin conditional knock-out mice
    • Beglopoulos V, Sun X, Saura CA, Lemere CA, Kim RD, et al. (2004) Reduced beta-amyloid production and increased inflammatory responses in presenilin conditional knock-out mice. J Biol Chem 279: 46907-46914.
    • (2004) J Biol Chem , vol.279 , pp. 46907-46914
    • Beglopoulos, V.1    Sun, X.2    Saura, C.A.3    Lemere, C.A.4    Kim, R.D.5
  • 42
    • 75149194381 scopus 로고    scopus 로고
    • Regulatory Natural Killer Cells: New Players in the IL-10 Anti-Inflammatory Response
    • Vivier E, Ugolini S, (2009) Regulatory Natural Killer Cells: New Players in the IL-10 Anti-Inflammatory Response. Cell Host & Microbe 6: 493-495.
    • (2009) Cell Host & Microbe , vol.6 , pp. 493-495
    • Vivier, E.1    Ugolini, S.2
  • 43
    • 50249175130 scopus 로고    scopus 로고
    • Loss of trimethylation at lysine 27 of histone H3 is a predictor of poor outcome in breast, ovarian, and pancreatic cancers
    • Wei YK, Xia WY, Zhang ZH, Liu JS, Wang HM, et al. (2008) Loss of trimethylation at lysine 27 of histone H3 is a predictor of poor outcome in breast, ovarian, and pancreatic cancers. Molecular carcinogenesis 47: 701-706.
    • (2008) Molecular Carcinogenesis , vol.47 , pp. 701-706
    • Wei, Y.K.1    Xia, W.Y.2    Zhang, Z.H.3    Liu, J.S.4    Wang, H.M.5
  • 44
    • 58049191558 scopus 로고    scopus 로고
    • Chromatin Signatures in Multipotent Human Hematopoietic Stem Cells Indicate the Fate of Bivalent Genes during Differentiation
    • Cui KR, Zang CZ, Roh TY, Schones DE, Childs RW, et al. (2009) Chromatin Signatures in Multipotent Human Hematopoietic Stem Cells Indicate the Fate of Bivalent Genes during Differentiation. Cell stem cell 4: 80-93.
    • (2009) Cell Stem Cell , vol.4 , pp. 80-93
    • Cui, K.R.1    Zang, C.Z.2    Roh, T.Y.3    Schones, D.E.4    Childs, R.W.5
  • 45
    • 66149176899 scopus 로고    scopus 로고
    • Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize
    • Wang XF, Elling AA, Li XY, Li N, Peng ZY, et al. (2009) Genome-Wide and Organ-Specific Landscapes of Epigenetic Modifications and Their Relationships to mRNA and Small RNA Transcriptomes in Maize. Plant Cell 21: 1053-1069.
    • (2009) Plant Cell , vol.21 , pp. 1053-1069
    • Wang, X.F.1    Elling, A.A.2    Li, X.Y.3    Li, N.4    Peng, Z.Y.5
  • 48
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R, (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Research 18: 1851-1858.
    • (2008) Genome Research , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 49
  • 50
    • 57149085481 scopus 로고    scopus 로고
    • Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
    • t Hoen PAC, Ariyurek Y, Thygesen HH, Vreugdenhil E, Vossen RHAM, et al. (2008) Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Research 36.
    • (2008) Nucleic Acids Research , vol.36
    • t Hoen, P.A.C.1    Ariyurek, Y.2    Thygesen, H.H.3    Vreugdenhil, E.4    Vossen, R.H.A.M.5
  • 51
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29: e45.
    • (2001) Nucleic Acids Research , vol.29
    • Pfaffl, M.W.1


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