-
1
-
-
0017335359
-
Studies on the assembly of a spherical plant virus. III. Reassembly of infectious virus under mild conditions
-
DOI 10.1016/S0022-2836(77)80038-7
-
Adolph KW, Butler P. 1977. Studies on the assembly of a spherical plant virus: III. Reassembly of infectious virus under mild conditions. J Mol Biol 109: 345-357. (Pubitemid 8027708)
-
(1977)
Journal of Molecular Biology
, vol.109
, Issue.2
, pp. 345-357
-
-
Adolph, K.W.1
Butler, P.J.G.2
-
2
-
-
0024724209
-
Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution
-
Allison RF, Janda M, Ahlquist P. 1989. Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution. Virology 172: 321-330.
-
(1989)
Virology
, vol.172
, pp. 321-330
-
-
Allison, R.F.1
Janda, M.2
Ahlquist, P.3
-
3
-
-
74249115345
-
Topology links RNA secondary structure with global conformation, dynamics, and adaptation
-
Bailor MH, Sun XY, Al-Hashimi HM. 2010. Topology links RNA secondary structure with global conformation, dynamics, and adaptation. Science 327: 202-206.
-
(2010)
Science
, vol.327
, pp. 202-206
-
-
Bailor, M.H.1
Sun, X.Y.2
Al-Hashimi, H.M.3
-
4
-
-
78649233212
-
Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy
-
Baird NJ, Ludtke SJ, Khant H, Chiu W, Pan T, Sosnick TR. 2010. Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy. J Am Chem Soc 132: 16352-16353.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 16352-16353
-
-
Baird, N.J.1
Ludtke, S.J.2
Khant, H.3
Chiu, W.4
Pan, T.5
Sosnick, T.R.6
-
5
-
-
0037249473
-
Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression
-
DOI 10.1016/S1097-2765(03)00009-1, PII S1097276503000091
-
Bashan A, Agmon I, Zarivach R, Schluenzen F, Harms J, Berisio R, Bartels H, Franceschi F, Auerbach T, Hansen HAS, et al. 2003. Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression. Mol Cell 11: 91-102. (Pubitemid 36126593)
-
(2003)
Molecular Cell
, vol.11
, Issue.1
, pp. 91-102
-
-
Bashan, A.1
Agmon, I.2
Zarivach, R.3
Schluenzen, F.4
Harms, J.5
Berisio, R.6
Bartels, H.7
Franceschi, F.8
Auerbach, T.9
Hansen, H.A.S.10
Kossoy, E.11
Kessler, M.12
Yonath, A.13
-
6
-
-
0033549817
-
Tertiary motifs in RNA structure and folding
-
DOI 10.1002/(SICI)1521-3773(19990816)38:16<2326::AID-ANIE2326>3.0. CO;2-3
-
Batey RT, Rambo RP, Doudna JA. 1999. Tertiary motifs in RNA structure and folding. Angew Chem Int Ed 38: 2326-2343. (Pubitemid 29399554)
-
(1999)
Angewandte Chemie - International Edition
, vol.38
, Issue.16
, pp. 2326-2343
-
-
Batey, R.T.1
Rambo, R.P.2
Doudna, J.A.3
-
7
-
-
0035049802
-
The internal ribosome entry site (IRES) of hepatitis C virus visualized by electron microscopy
-
DOI 10.1017/S1355838201001406
-
Beales LP, Rowlands DJ, Holzenburg A. 2001. The internal ribosome entry site (IRES) of hepatitis C virus visualized by electron microscopy. RNA 7: 661-670. (Pubitemid 32405863)
-
(2001)
RNA
, vol.7
, Issue.5
, pp. 661-670
-
-
Beales, L.P.1
Rowlands, D.J.2
Holzenburg, A.3
-
8
-
-
34247891557
-
Structural characterization of flexible proteins using small-angle X-ray scattering
-
DOI 10.1021/ja069124n
-
Bernadó P, Mylonas E, Petoukhov MV, Blackledge M, Svergun DI. 2007. Structural characterization of flexible proteins using small-angle X-ray scattering. J Am Chem Soc 129: 5656-5664. (Pubitemid 46697655)
-
(2007)
Journal of the American Chemical Society
, vol.129
, Issue.17
, pp. 5656-5664
-
-
Bernado, P.1
Mylonas, E.2
Petoukhov, M.V.3
Blackledge, M.4
Svergun, D.I.5
-
9
-
-
0036922690
-
RNA-protein interactions in spherical viruses
-
DOI 10.1007/s00705-002-0891-6
-
Bink HHJ, Pleij CWA. 2002. RNA-protein interactions in spherical viruses. Arch Virol 147: 2261-2279. (Pubitemid 36058926)
-
(2002)
Archives of Virology
, vol.147
, Issue.12
, pp. 2261-2279
-
-
Bink, H.H.J.1
Pleij, C.W.A.2
-
10
-
-
0034103611
-
A collapsed non-native RNA folding state
-
DOI 10.1038/75125
-
Buchmueller KL, Webb AE, Richardson DA, Weeks KM. 2000. A collapsed non-native RNA folding state. Nat Struct Biol 7: 362-366. (Pubitemid 30249996)
-
(2000)
Nature Structural Biology
, vol.7
, Issue.5
, pp. 362-366
-
-
Buchmueller, K.L.1
Webb, A.E.2
Richardson, D.A.3
Weeks, K.M.4
-
11
-
-
30344443115
-
Persistence length changes dramatically as RNA folds
-
Caliskan G, Hyeon C, Perez-Salas U, Briber RM, Woodson SA, Thirumalai D. 2005. Persistence length changes dramatically as RNA folds. Phys Rev Lett 95: 268303-268307.
-
(2005)
Phys Rev Lett
, vol.95
, pp. 268303-268307
-
-
Caliskan, G.1
Hyeon, C.2
Perez-Salas, U.3
Briber, R.M.4
Woodson, S.A.5
Thirumalai, D.6
-
12
-
-
0030831182
-
Genetic and physical maps of Saccharomyces cerevisiae
-
Cherry JM, Ball C, Weng S, Juvik G, Schmidt R, Adler C, Dunn B, Dwight S, Riles L, Mortimer RK, et al. 1997. Genetic and physical maps of Saccharomyces cerevisiae. Nature 387: 67-73. (Pubitemid 27334668)
-
(1997)
Nature
, vol.387
, Issue.6632 SUPPL.
, pp. 67-73
-
-
Cherry, J.M.1
Ball, C.2
Weng, S.3
Juvik, G.4
Schmidt, R.5
Adler, C.6
Dunn, B.7
Dwight, S.8
Riles, L.9
Mortimer, R.K.10
Botstein, D.11
-
13
-
-
57649130782
-
A repulsive field: Advances in the electrostatics of the ion atmosphere
-
Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. 2008. A repulsive field: Advances in the electrostatics of the ion atmosphere. Curr Opin Chem Biol 12: 619-625.
-
(2008)
Curr Opin Chem Biol
, vol.12
, pp. 619-625
-
-
Chu, V.B.1
Bai, Y.2
Lipfert, J.3
Herschlag, D.4
Doniach, S.5
-
14
-
-
0037928815
-
Counterion distribution around DNA probed by solution X-ray scattering
-
Das R, Mills TT, Kwok LW, Maskel GS, Millett IS, Doniach S, Finkelstein KD, Herschlag D, Pollack L. 2003. Counterion distribution around DNA probed by solution X-ray scattering. Phys Rev Lett 90: 188103-188107.
-
(2003)
Phys Rev Lett
, vol.90
, pp. 188103-188107
-
-
Das, R.1
Mills, T.T.2
Kwok, L.W.3
Maskel, G.S.4
Millett, I.S.5
Doniach, S.6
Finkelstein, K.D.7
Herschlag, D.8
Pollack, L.9
-
15
-
-
1242274330
-
A guide to ions and RNA structure
-
DOI 10.1261/rna.5205404
-
Draper DE. 2004. A guide to ions and RNA structure. RNA 10: 335-343. (Pubitemid 38240993)
-
(2004)
RNA
, vol.10
, Issue.3
, pp. 335-343
-
-
Draper, D.E.1
-
16
-
-
72449188596
-
NADPH oxidase activator p67phox behaves in solution as a multidomain protein with semi-flexible linkers
-
Durand D, Vivs C, Cannella D, Prez J, Pebay-Peyroula E, Vachette P, Fieschi F. 2010. NADPH oxidase activator p67phox behaves in solution as a multidomain protein with semi-flexible linkers. J Struct Biol 169: 45-53.
-
(2010)
J Struct Biol
, vol.169
, pp. 45-53
-
-
Durand, D.1
Vivs, C.2
Cannella, D.3
Prez, J.4
Pebay-Peyroula, E.5
Vachette, P.6
Fieschi, F.7
-
17
-
-
0022254468
-
Hydrodynamic properties of RNA: Effect of multivalent cations on the sedimentation behavior of turnip yellow mosaic virus RNA
-
DOI 10.1021/bi00335a032
-
Eecen HG, van Dierendonck JH, Pleij CWA, Mandel M, Bosch L. 1985. Hydrodynamic properties of RNA - effect of multivalent cations on the sedimentation behavior of turnip yellow mosaic-virus RNA. Biochemistry 24: 3610-3617. (Pubitemid 15011900)
-
(1985)
Biochemistry
, vol.24
, Issue.14
, pp. 3610-3617
-
-
Eecen, H.G.1
Van Dierendonck, J.H.2
Pleij, C.W.A.3
-
18
-
-
13244289884
-
RAG: RNA-As-Graphs web resource
-
doi: 10.1186/1471-2105-5-88
-
Fera D, Kim N, Shiffeldrim N, Zorn J, Laserson U, Gan HH, Schlick T. 2004. RAG: RNA-As-Graphs web resource. BMC Bioinformatics 5: 88. doi: 10.1186/1471-2105-5-88.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 88
-
-
Fera, D.1
Kim, N.2
Shiffeldrim, N.3
Zorn, J.4
Laserson, U.5
Gan, H.H.6
Schlick, T.7
-
20
-
-
0016829881
-
Small-angle X-ray studies on the structure of 16-S ribosomal RNA and of a complex of ribosomal protein S4 and 16-S ribosomal RNA from Escherichia coli
-
Folkhard W, Pilz I, Kratky O, Garrett R, Stöffler G. 1975. Small-angle X-ray studies on the structure of 16-S ribosomal RNA and of a complex of ribosomal protein S4 and 16-S ribosomal RNA from Escherichia coli. Eur J Biochem 59: 63-71.
-
(1975)
Eur J Biochem
, vol.59
, pp. 63-71
-
-
Folkhard, W.1
Pilz, I.2
Kratky, O.3
Garrett, R.4
Stöffler, G.5
-
21
-
-
62649139615
-
DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
-
Franke D, Svergun DI. 2009. DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering. J Appl Crystallogr 42: 342-346.
-
(2009)
J Appl Crystallogr
, vol.42
, pp. 342-346
-
-
Franke, D.1
Svergun, D.I.2
-
22
-
-
0038606979
-
Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design
-
DOI 10.1093/nar/gkg365
-
Gan HH, Pasquali S, Schlick T. 2003. Exploring the repertoire of RNAs secondary motifs using graph theory; implications for RNA design. Nucleic Acids Res 31: 2926-2943. (Pubitemid 37442136)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.11
, pp. 2926-2943
-
-
Gan, H.H.1
Pasquali, S.2
Schlick, T.3
-
23
-
-
43049086258
-
Folding kinetics of large RNAs
-
Geis M, Flamm C, Wolfinger MT, Tanzer A, Hofacker IL, Middendorf M, Mandl C, Stadler PF, Thurner C. 2008. Folding kinetics of large RNAs. J Mol Biol 379: 160-173.
-
(2008)
J Mol Biol
, vol.379
, pp. 160-173
-
-
Geis, M.1
Flamm, C.2
Wolfinger, M.T.3
Tanzer, A.4
Hofacker, I.L.5
Middendorf, M.6
Mandl, C.7
Stadler, P.F.8
Thurner, C.9
-
24
-
-
0003788049
-
-
3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Gesteland RF, Cech T, Atkins JF. 2006. RNA world: The nature of modern RNA suggests a prebiotic RNA world, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2006)
RNA World: The Nature of Modern RNA Suggests a Prebiotic RNA World
-
-
Gesteland, R.F.1
Cech, T.2
Atkins, J.F.3
-
26
-
-
0034718497
-
Shape anisotropy of a single random-walk polymer
-
Haber C, Ruiz SA, Wirtz D. 2000. Shape anisotropy of a single random-walk polymer. Proc Natl Acad Sci 97: 10792-10795.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 10792-10795
-
-
Haber, C.1
Ruiz, S.A.2
Wirtz, D.3
-
27
-
-
34249772381
-
Fast folding and comparison of RNA secondary structures
-
Hofacker IL, Fontana W, Stadler PF, Bonhoeffer LS, Tacker M, Schuster P. 1994. Fast folding and comparison of RNA secondary structures. Monatsh Chem 125: 167-188.
-
(1994)
Monatsh Chem
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, L.S.4
Tacker, M.5
Schuster, P.6
-
28
-
-
48249125095
-
Structural principles from large RNAs
-
Holbrook SR. 2008. Structural principles from large RNAs. Annu Rev Biophys 37: 445-464.
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 445-464
-
-
Holbrook, S.R.1
-
30
-
-
33845328453
-
Size, shape, and flexibility of RNA structures
-
Hyeon C, Dima RI, Thirumalai D. 2006. Size, shape, and flexibility of RNA structures. J Chem Phys 125: 194905-194915.
-
(2006)
J Chem Phys
, vol.125
, pp. 194905-194915
-
-
Hyeon, C.1
Dima, R.I.2
Thirumalai, D.3
-
31
-
-
79957637169
-
RAG: An update to the RNA-As-Graphs resource
-
doi: 10.1186/1471-2105-12-219
-
Izzo JA, Kim N, Elmetwaly S, Schlick T. 2011. RAG: An update to the RNA-As-Graphs resource. BMC Bioinformatics 12: 219. doi: 10.1186/1471-2105-12- 219.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 219
-
-
Izzo, J.A.1
Kim, N.2
Elmetwaly, S.3
Schlick, T.4
-
32
-
-
0017328923
-
Comparative neutron small angle scattering study of small spherical RNA viruses
-
Jacrot B, Chauvin C, Witz J. 1977. Comparative neutron small-angle scattering study of small spherical RNA viruses. Nature 266: 417-421. (Pubitemid 8067207)
-
(1977)
Nature
, vol.266
, Issue.5601
, pp. 417-421
-
-
Jacrot, B.1
Chauvin, C.2
Witz, J.3
-
33
-
-
58249111738
-
Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters
-
Jonikas MA, Radmer RJ, Laederach A, Das R, Pearlman S, Herschlag D, Altman RB. 2009. Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters. RNA 15: 189-199.
-
(2009)
RNA
, vol.15
, pp. 189-199
-
-
Jonikas, M.A.1
Radmer, R.J.2
Laederach, A.3
Das, R.4
Pearlman, S.5
Herschlag, D.6
Altman, R.B.7
-
34
-
-
0034291012
-
Reconstructing ellipsoids from three projection contours
-
DOI 10.1016/S0167-8655(00)00055-6
-
Kayikcioglu T, Gangal A, Ozer M. 2000. Reconstructing ellipsoids from three projection contours. Pattern Recognit Lett 21: 959-968. (Pubitemid 32034308)
-
(2000)
Pattern Recognition Letters
, vol.21
, Issue.11
, pp. 959-968
-
-
Kayikcioglu, T.1
Gangal, A.2
Ozer, M.3
-
35
-
-
79956200670
-
Solution structure of RNase P RNA
-
Kazantsev AV, Rambo RP, Karimpour S, Santalucia J, Tainer JA, Pace NR. 2011. Solution structure of RNase P RNA. RNA 17: 1159-1171.
-
(2011)
RNA
, vol.17
, pp. 1159-1171
-
-
Kazantsev, A.V.1
Rambo, R.P.2
Karimpour, S.3
Santalucia, J.4
Tainer, J.A.5
Pace, N.R.6
-
37
-
-
33645214738
-
ATSAS 2.1, a program package for small-angle scattering data analysis
-
Konarev PV, Petoukhov MV, Volkov VV, Svergun DI. 2006. ATSAS 2.1, a program package for small-angle scattering data analysis. J Appl Crystallogr 39: 277-286.
-
(2006)
J Appl Crystallogr
, vol.39
, pp. 277-286
-
-
Konarev, P.V.1
Petoukhov, M.V.2
Volkov, V.V.3
Svergun, D.I.4
-
38
-
-
0035124442
-
Automated matching of high- and low-resolution structural models
-
DOI 10.1107/S0021889800014126
-
Kozin MB, Svergun DI. 2001. Automated matching of high- and low-resolution structural models. J Appl Crystallogr 34: 33-41. (Pubitemid 32151714)
-
(2001)
Journal of Applied Crystallography
, vol.34
, Issue.1
, pp. 33-41
-
-
Kozin, M.B.1
Svergun, D.I.2
-
39
-
-
56749169204
-
Reconstructing three-dimensional shape envelopes from time-resolved small-angle X-ray scattering data
-
Lamb J, Kwok L, Qiu XY, Andresen K, Park HY, Pollack L. 2008. Reconstructing three-dimensional shape envelopes from time-resolved small-angle X-ray scattering data. J Appl Crystallogr 41: 1046-1052.
-
(2008)
J Appl Crystallogr
, vol.41
, pp. 1046-1052
-
-
Lamb, J.1
Kwok, L.2
Qiu, X.Y.3
Andresen, K.4
Park, H.Y.5
Pollack, L.6
-
40
-
-
29844453234
-
Topology of three-way junctions in folded RNAs
-
DOI 10.1261/rna.2208106
-
Lescoute A, Westhof E. 2006. Topology of three-way junctions in folded RNAs. RNA 12: 83-93. (Pubitemid 43037456)
-
(2006)
RNA
, vol.12
, Issue.1
, pp. 83-93
-
-
Lescoute, A.1
Westhof, E.2
-
41
-
-
0032439514
-
Folding of branched RNA species
-
Lilley DMJ. 1998. Folding of branched RNA species. Biopolymers 48: 101-112.
-
(1998)
Biopolymers
, vol.48
, pp. 101-112
-
-
Lilley, D.M.J.1
-
42
-
-
0033636685
-
Structures of helical junctions in nucleic acids
-
Lilley DM. 2000. Structures of helical junctions in nucleic acids. Q Rev Biophys 33: 109-159.
-
(2000)
Q Rev Biophys
, vol.33
, pp. 109-159
-
-
Lilley, D.M.1
-
43
-
-
34248393495
-
Low-resolution models for nucleic acids from small-angle X-ray scattering with applications to electrostatic modeling
-
DOI 10.1107/S0021889807001707, PII S0021889807001707
-
Lipfert J, Chu VB, Bai Y, Herschlag D, Doniach S. 2007a. Low-resolution models for nucleic acids from small-angle X-ray scattering with applications to electrostatic modeling. J Appl Crystallogr 40: S229-S234. (Pubitemid 46732693)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.SUPPL. 1
-
-
Lipfert, J.1
Chu, V.B.2
Bai, Y.3
Herschlag, D.4
Doniach, S.5
-
44
-
-
33845971464
-
Structural Transitions and Thermodynamics of a Glycine-Dependent Riboswitch from Vibrio cholerae
-
DOI 10.1016/j.jmb.2006.10.022, PII S002228360601360X
-
Lipfert J, Das R, Chu VB, Kudaravalli M, Boyd N, Herschlag D, Doniach S. 2007b. Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae. J Mol Biol 365: 1393-1406. (Pubitemid 46048825)
-
(2007)
Journal of Molecular Biology
, vol.365
, Issue.5
, pp. 1393-1406
-
-
Lipfert, J.1
Das, R.2
Chu, V.B.3
Kudaravalli, M.4
Boyd, N.5
Herschlag, D.6
Doniach, S.7
-
45
-
-
50649108803
-
The complete VS ribozyme in solution studied by small-angle X-ray scattering
-
Lipfert J, Ouellet J, Norman DG, Doniach S, Lilley DMJ. 2008. The complete VS ribozyme in solution studied by small-angle X-ray scattering. Structure 16: 1357-1367.
-
(2008)
Structure
, vol.16
, pp. 1357-1367
-
-
Lipfert, J.1
Ouellet, J.2
Norman, D.G.3
Doniach, S.4
Lilley, D.M.J.5
-
46
-
-
77956098333
-
Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks
-
Liu H, Jin L, Koh SBS, Atanasov I, Schein S, Wu L, Zhou ZH. 2010. Atomic structure of human adenovirus by cryo-EM reveals interactions among protein networks. Science 329: 1038-1043.
-
(2010)
Science
, vol.329
, pp. 1038-1043
-
-
Liu, H.1
Jin, L.2
Koh, S.B.S.3
Atanasov, I.4
Schein, S.5
Wu, L.6
Zhou, Z.H.7
-
47
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
DOI 10.1006/jmbi.1999.2700
-
Mathews DH, Sabina J, Zuker M, Turner DH. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288: 911-940. (Pubitemid 29248642)
-
(1999)
Journal of Molecular Biology
, vol.288
, Issue.5
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
48
-
-
1942470024
-
Design and Validation of a Tool for Neurite Tracing and Analysis in Fluorescence Microscopy Images
-
Meijering E, Jacob M, Sarria JCF, Steiner P, Hirling H, Unser M. 2004. Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images. Cytometry A 58: 167-176. (Pubitemid 38509178)
-
(2004)
Cytometry Part A
, vol.58
, Issue.2
, pp. 167-176
-
-
Meijering, E.1
Jacob, M.2
Sarria, J.-C.F.3
Steiner, P.4
Hirling, H.5
Unser, M.6
-
49
-
-
2442440301
-
Entropy-Driven Folding of an RNA Helical Junction: An Isothermal Titration Calorimetric Analysis of the Hammerhead Ribozyme
-
DOI 10.1021/bi0360657
-
Mikulecky PJ, Takach JC, Feig AL. 2004. Entropy-driven folding of an RNA helical junction: An isothermal titration calorimetric analysis of the hammerhead ribozyme. Biochemistry 43: 5870-5881. (Pubitemid 38623620)
-
(2004)
Biochemistry
, vol.43
, Issue.19
, pp. 5870-5881
-
-
Mikulecky, P.J.1
Takach, J.C.2
Feig, A.L.3
-
50
-
-
28144441819
-
Ion atmosphere of three-way junction nucleic acid
-
DOI 10.1021/jp050005o
-
Mohanty U, Spasic A, Kim HD, Chu S. 2005. Ion atmosphere of three-way junction nucleic acid. J Phys Chem B 109: 21369-21374. (Pubitemid 41698310)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.45
, pp. 21369-21374
-
-
Mohanty, U.1
Spasic, A.2
Kim, H.D.3
Chu, S.4
-
51
-
-
0029100264
-
Relative orientation of RNA helices in a group-I ribozyme determined by helix extension electron-microscopy
-
Nakamura TM, Wang YH, Zaug AJ, Griffith JD, Cech TR. 1995. Relative orientation of RNA helices in a group-I ribozyme determined by helix extension electron-microscopy. EMBO J 14: 4849-4859.
-
(1995)
EMBO J
, vol.14
, pp. 4849-4859
-
-
Nakamura, T.M.1
Wang, Y.H.2
Zaug, A.J.3
Griffith, J.D.4
Cech, T.R.5
-
52
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
DOI 10.1126/science.289.5481.920
-
Nissen P, Hansen J, Ban N, Moore PB, Steitz TA. 2000. The structural basis of ribosome activity in peptide bond synthesis. Science 289: 920-930. (Pubitemid 30659940)
-
(2000)
Science
, vol.289
, Issue.5481
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
53
-
-
77955121660
-
Structure of the three-way helical junction of the hepatitis C virus IRES element
-
Ouellet J, Melcher S, Iqbal A, Ding Y, Lilley DMJ. 2010. Structure of the three-way helical junction of the hepatitis C virus IRES element. RNA 16: 1597-1609.
-
(2010)
RNA
, vol.16
, pp. 1597-1609
-
-
Ouellet, J.1
Melcher, S.2
Iqbal, A.3
Ding, Y.4
Lilley, D.M.J.5
-
55
-
-
79958045453
-
Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law
-
Rambo RP, Tainer JA. 2011. Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law. Biopolymers 95: 559-571.
-
(2011)
Biopolymers
, vol.95
, pp. 559-571
-
-
Rambo, R.P.1
Tainer, J.A.2
-
56
-
-
33748940970
-
Genome packaging by spherical plant RNA viruses
-
DOI 10.1146/annurev.phyto.44.070505.143334
-
Rao ALN. 2006. Genome packaging by spherical plant RNA viruses. Annu Rev Phytopathol 44: 61-87. (Pubitemid 44435698)
-
(2006)
Annual Review of Phytopathology
, vol.44
, pp. 61-87
-
-
Rao, A.L.N.1
-
59
-
-
0023237919
-
The shapes of random walks
-
Rudnick J, Gaspari G. 1987. The shapes of random walks. Science 237: 384-389. (Pubitemid 17102583)
-
(1987)
Science
, vol.237
, Issue.4813
, pp. 384-389
-
-
Rudnick, J.1
Gaspari, G.2
-
60
-
-
34249939912
-
Selective and nonselective packaging of cellular RNAs in retrovirus particles
-
DOI 10.1128/JVI.02833-06
-
Rulli SJ, Hibbert CS, Mirro J, Pederson T, Biswal S, Rein A. 2007. Selective and nonselective packaging of cellular RNAs in retrovirus particles. J Virol 81: 6623-6631. (Pubitemid 46878066)
-
(2007)
Journal of Virology
, vol.81
, Issue.12
, pp. 6623-6631
-
-
Rulli Jr., S.J.1
Hibbert, C.S.2
Mirro, J.3
Pederson, T.4
Biswal, S.5
Rein, A.6
-
61
-
-
33749462736
-
The structural and functional role of RNA in icosahedral virus assembly
-
DOI 10.1146/annurev.micro.60.080805.142304
-
Schneemann A. 2006. The structural and functional role of RNA in icosahedral virus assembly. Annu Rev Microbiol 60: 51-67. (Pubitemid 44627940)
-
(2006)
Annual Review of Microbiology
, vol.60
, pp. 51-67
-
-
Schneemann, A.1
-
62
-
-
80052494580
-
Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints
-
Schroeder SJ, Stone JW, Bleckley S, Gibbons T, Mathews DM. 2011. Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints. Biophys J 101: 167-175.
-
(2011)
Biophys J
, vol.101
, pp. 167-175
-
-
Schroeder, S.J.1
Stone, J.W.2
Bleckley, S.3
Gibbons, T.4
Mathews, D.M.5
-
63
-
-
0023053991
-
Structure and assembly of turnip crinkle virus: II. Mechanism of reassembly in vitro
-
Sorger PK, Stockley PG, Harrison SC. 1986. Structure and assembly of turnip crinkle virus: II. Mechanism of reassembly in vitro. J Mol Biol 191: 639-658.
-
(1986)
J Mol Biol
, vol.191
, pp. 639-658
-
-
Sorger, P.K.1
Stockley, P.G.2
Harrison, S.C.3
-
64
-
-
0026910457
-
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
-
DOI 10.1107/S0021889892001663
-
Svergun DI. 1992. Determination of the regularization parameter in indirect-transform methods using perceptual criteria. J Appl Crystallogr 25: 495-503. (Pubitemid 23564996)
-
(1992)
Journal of Applied Crystallography
, vol.25
, Issue.PART 4
, pp. 495-503
-
-
Svergun, D.I.1
-
65
-
-
0033001996
-
Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing
-
Svergun DI. 1999. Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing. Biophys J 76: 2879-2886. (Pubitemid 29269438)
-
(1999)
Biophysical Journal
, vol.76
, Issue.6
, pp. 2879-2886
-
-
Svergun, D.I.1
-
66
-
-
0029185933
-
CRYSOL - A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
-
DOI 10.1107/S0021889895007047
-
Svergun D, Barberato C, Koch MHJ. 1995. CRYSOL - a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates. J Appl Crystallogr 28: 768-773. (Pubitemid 3014671)
-
(1995)
Journal of Applied Crystallography
, vol.28
, Issue.6
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.3
-
68
-
-
37349114868
-
The Three-dimensional Structure of Genomic RNA in Bacteriophage MS2: Implications for Assembly
-
DOI 10.1016/j.jmb.2007.08.067, PII S0022283607011369
-
Toropova K, Basnak G, Twarock R, Stockley PG, Ranson NA. 2008. The three-dimensional structure of genomic RNA in bacteriophage MS2: Implications for assembly. J Mol Biol 375: 824-836. (Pubitemid 350297278)
-
(2008)
Journal of Molecular Biology
, vol.375
, Issue.3
, pp. 824-836
-
-
Toropova, K.1
Basnak, G.2
Twarock, R.3
Stockley, P.G.4
Ranson, N.A.5
-
69
-
-
0034484041
-
Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules
-
DOI 10.1107/S0021889899015976
-
Walther D, Cohen FE, Doniach S. 2000. Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules. J Appl Crystallogr 33: 350-363. (Pubitemid 32142140)
-
(2000)
Journal of Applied Crystallography
, vol.33
, Issue.2
, pp. 350-363
-
-
Walther, D.1
Cohen, F.E.2
Doniach, S.3
-
70
-
-
51149203926
-
Feret's statistical diameter as a measure of particle size
-
Walton WH. 1948. Feret's statistical diameter as a measure of particle size. Nature 162: 329-330.
-
(1948)
Nature
, vol.162
, pp. 329-330
-
-
Walton, W.H.1
-
71
-
-
0028300137
-
Visualization of a tertiary structural domain of the tetrahymena group I intron by electron microscopy
-
DOI 10.1006/jmbi.1994.1118
-
Wang YH, Murphy FL, Cech TR, Griffith JD. 1994. Visualization of a tertiary structural domain of the Tetrahymena group I intron by electron microscopy. J Mol Biol 236: 64-71. (Pubitemid 24148947)
-
(1994)
Journal of Molecular Biology
, vol.236
, Issue.1
, pp. 64-71
-
-
Wang, Y.-H.1
Murphy, F.L.2
Cech, T.R.3
Griffith, J.D.4
-
72
-
-
77955787630
-
Advances in RNA structure analysis by chemical probing
-
Weeks KM. 2010. Advances in RNA structure analysis by chemical probing. Curr Opin Struct Biol 20: 295-304.
-
(2010)
Curr Opin Struct Biol
, vol.20
, pp. 295-304
-
-
Weeks, K.M.1
-
73
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, Brodersen DE, Clemons WM, Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T, Ramakrishnan V. 2000. Structure of the 30S ribosomal subunit. Nature 407: 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons, W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
74
-
-
0035209087
-
Using Situs for the registration of protein structures with low-resolution bead models from x-ray solution scattering
-
DOI 10.1107/S0021889801012869
-
Wriggers W, Chacon P. 2001. Using Situs for the registration of protein structures with low-resolution bead models from X-ray solution scattering. J Appl Crystallogr 34: 773-776. (Pubitemid 33144106)
-
(2001)
Journal of Applied Crystallography
, vol.34
, Issue.6
, pp. 773-776
-
-
Wriggers, W.1
Chacon, P.2
-
75
-
-
55849126359
-
Predicting the sizes of large RNA molecules
-
Yoffe AM, Prinsen P, Gopal A, Knobler CM, Gelbart WM, Ben-Shaul A. 2008. Predicting the sizes of large RNA molecules. Proc Natl Acad Sci 105: 16153-16158.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 16153-16158
-
-
Yoffe, A.M.1
Prinsen, P.2
Gopal, A.3
Knobler, C.M.4
Gelbart, W.M.5
Ben-Shaul, A.6
-
76
-
-
43749092377
-
3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy
-
DOI 10.1038/nature06893, PII NATURE06893
-
Yu XK, Jin L, Zhou ZH. 2008. 3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy. Nature 453: 415-419. (Pubitemid 351693126)
-
(2008)
Nature
, vol.453
, Issue.7193
, pp. 415-419
-
-
Yu, X.1
Jin, L.2
Zhou, Z.H.3
-
77
-
-
75149145980
-
Mechanism of folding chamber closure in a group II chaperonin
-
Zhang JJ, Baker ML, Schroder GF, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, et al. 2010. Mechanism of folding chamber closure in a group II chaperonin. Nature 463: 379-383.
-
(2010)
Nature
, vol.463
, pp. 379-383
-
-
Zhang, J.J.1
Baker, M.L.2
Schroder, G.F.3
Douglas, N.R.4
Reissmann, S.5
Jakana, J.6
Dougherty, M.7
Fu, C.J.8
Levitt, M.9
Ludtke, S.J.10
-
79
-
-
34248388501
-
Modelling of bacteriophage capsids and free nucleic acids
-
DOI 10.1107/S0021889807005936, PII S0021889807005936
-
Zipper P, Durschlag H. 2007. Modelling of bacteriophage capsids and free nucleic acids. J Appl Crystallogr 40: S153-S158. (Pubitemid 46732678)
-
(2007)
Journal of Applied Crystallography
, vol.40
, Issue.SUPPL. 1
-
-
Zipper, P.1
Durchschlag, H.2
-
80
-
-
0016775627
-
A small-angle X-ray scattering investigation on the structure of the RNA from bacteriophage MS2
-
Zipper P, Folkhard W. 1975. A small-angle X-ray scattering investigation on the structure of the RNA from bacteriophage MS2. FEBS Lett 56: 283-287.
-
(1975)
FEBS Lett
, vol.56
, pp. 283-287
-
-
Zipper, P.1
Folkhard, W.2
-
81
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
DOI 10.1093/nar/gkg595
-
Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415. (Pubitemid 37442169)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3406-3415
-
-
Zuker, M.1
|