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Volumn 463, Issue 7279, 2010, Pages 379-383

Mechanism of folding chamber closure in a group II chaperonin

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; CELL PROTEIN; CHAPERONIN; NUCLEOTIDE;

EID: 75149145980     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature08701     Document Type: Article
Times cited : (175)

References (39)
  • 1
    • 0032489016 scopus 로고    scopus 로고
    • The Hsp70 and Hsp60 chaperone machines
    • Bukau, B. & Horwich, A. L. The Hsp70 and Hsp60 chaperone machines. Cell 92, 351-366 (1998).
    • (1998) Cell , vol.92 , pp. 351-366
    • Bukau, B.1    Horwich, A.L.2
  • 2
    • 0034924812 scopus 로고    scopus 로고
    • Folding of newly translated proteins in vivo: The role of molecular chaperones
    • Frydman, J. Folding of newly translated proteins in vivo: the role of molecular chaperones. Annu. Rev. Biochem. 70, 603-647 (2001).
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 603-647
    • Frydman, J.1
  • 3
    • 0037040541 scopus 로고    scopus 로고
    • Molecular chaperones in the cytosol: From nascent chain to folded protein
    • Hartl, F. U. & Hayer-Hartl, M. Molecular chaperones in the cytosol: from nascent chain to folded protein. Science 295, 1852-1858 (2002).
    • (2002) Science , vol.295 , pp. 1852-1858
    • Hartl, F.U.1    Hayer-Hartl, M.2
  • 4
    • 0032478545 scopus 로고    scopus 로고
    • Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
    • Ditzel, L. et al. Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT. Cell 93, 125-138 (1998).
    • (1998) Cell , vol.93 , pp. 125-138
    • Ditzel, L.1
  • 5
    • 34247635168 scopus 로고    scopus 로고
    • Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins
    • Reissmann, S., Parnot, C., Booth, C. R., Chiu, W. & Frydman, J. Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins. Nature Struct. Mol. Biol. 14, 432-440 (2007).
    • (2007) Nature Struct. Mol. Biol. , vol.14 , pp. 432-440
    • Reissmann, S.1    Parnot, C.2    Booth, C.R.3    Chiu, W.4    Frydman, J.5
  • 6
    • 0038737003 scopus 로고    scopus 로고
    • Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis
    • Meyer, A. S. et al. Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis. Cell 113, 369-381 (2003).
    • (2003) Cell , vol.113 , pp. 369-381
    • Meyer, A.S.1
  • 7
    • 0038413900 scopus 로고    scopus 로고
    • Nucleotide-dependent protein folding in the type II chaperonin from the mesophilic archaeon Methanococcus maripaludis
    • Kusmierczyk, A. R. & Martin, J. Nucleotide-dependent protein folding in the type II chaperonin from the mesophilic archaeon Methanococcus maripaludis. Biochem. J. 371, 669-673 (2003).
    • (2003) Biochem. J. , vol.371 , pp. 669-673
    • Kusmierczyk, A.R.1    Martin, J.2
  • 8
    • 0842281551 scopus 로고    scopus 로고
    • Principles of protein folding, misfolding and aggregation
    • Dobson, C. M. Principles of protein folding, misfolding and aggregation. Semin. Cell Dev. Biol. 15, 3-16 (2004).
    • (2004) Semin. Cell Dev. Biol. , vol.15 , pp. 3-16
    • Dobson, C.M.1
  • 9
    • 39349083915 scopus 로고    scopus 로고
    • Adapting proteostasis for disease intervention
    • Balch, W. E., Morimoto, R. I., Dillin, A. & Kelly, J. W. Adapting proteostasis for disease intervention. Science 319, 916-919 (2008).
    • (2008) Science , vol.319 , pp. 916-919
    • Balch, W.E.1    Morimoto, R.I.2    Dillin, A.3    Kelly, J.W.4
  • 10
    • 57149098022 scopus 로고    scopus 로고
    • Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies
    • Yam, A. Y. et al. Defining the TRiC/CCT interactome links chaperonin function to stabilization of newly made proteins with complex topologies. Nature Struct. Mol. Biol. 15, 1255-1262 (2008).
    • (2008) Nature Struct. Mol. Biol. , vol.15 , pp. 1255-1262
    • Yam, A.Y.1
  • 11
    • 33749177252 scopus 로고    scopus 로고
    • The chaperonin TRiC controls polyglutamine aggregation and toxicity through subunit-specific interactions
    • Tam, S., Geller, R., Spiess, C. & Frydman, J. The chaperonin TRiC controls polyglutamine aggregation and toxicity through subunit-specific interactions. Nature Cell Biol. 8, 1155-1162 (2006).
    • (2006) Nature Cell Biol. , vol.8 , pp. 1155-1162
    • Tam, S.1    Geller, R.2    Spiess, C.3    Frydman, J.4
  • 12
    • 33749176269 scopus 로고    scopus 로고
    • Cytosolic chaperonin prevents polyglutamine toxicity with altering the aggregation state
    • Kitamura, A. et al. Cytosolic chaperonin prevents polyglutamine toxicity with altering the aggregation state. Nature Cell Biol. 8, 1163-1169 (2006).
    • (2006) Nature Cell Biol. , vol.8 , pp. 1163-1169
    • Kitamura, A.1
  • 13
    • 0027943510 scopus 로고
    • The crystal structure of the bacterial chaperonin GroEL at 2.8 A
    • Braig, K. et al. The crystal structure of the bacterial chaperonin GroEL at 2.8 A. Nature 371, 578-586 (1994).
    • (1994) Nature , vol.371 , pp. 578-586
    • Braig, K.1
  • 14
    • 13244295644 scopus 로고
    • ATP induces large quaternary rearrangements in a cage-like chaperonin structure
    • Saibil, H. R. et al. ATP induces large quaternary rearrangements in a cage-like chaperonin structure. Curr. Biol. 3, 265-273 (1993).
    • (1993) Curr. Biol. , vol.3 , pp. 265-273
    • Saibil, H.R.1
  • 15
    • 46449109112 scopus 로고    scopus 로고
    • Mechanism of lid closure in the eukaryotic chaperonin TRiC/ CCT. Nature Struct
    • Booth, C. R. et al. Mechanism of lid closure in the eukaryotic chaperonin TRiC/ CCT. Nature Struct. Mol. Biol. 15, 746-753 (2008).
    • (2008) Mol. Biol. , vol.15 , pp. 746-753
    • Booth, C.R.1
  • 16
    • 0038642763 scopus 로고    scopus 로고
    • Nested cooperativity and salt dependence of the ATPase activity of the archaeal chaperonin Mm-cpn
    • Kusmierczyk, A. R. & Martin, J. Nested cooperativity and salt dependence of the ATPase activity of the archaeal chaperonin Mm-cpn. FEBS Lett. 547, 201-204 (2003).
    • (2003) FEBS Lett. , vol.547 , pp. 201-204
    • Kusmierczyk, A.R.1    Martin, J.2
  • 17
    • 41449090651 scopus 로고    scopus 로고
    • Multiple states of a nucleotide-bound group 2 chaperonin
    • Clare, D. K. et al. Multiple states of a nucleotide-bound group 2 chaperonin. Structure 16, 528-534 (2008).
    • (2008) Structure , vol.16 , pp. 528-534
    • Clare, D.K.1
  • 19
    • 40049105503 scopus 로고    scopus 로고
    • De novo backbone trace of GroEL from single particle electron cryomicroscopy
    • Ludtke, S. J. et al. De novo backbone trace of GroEL from single particle electron cryomicroscopy. Structure 16, 441-448 (2008).
    • (2008) Structure , vol.16 , pp. 441-448
    • Ludtke, S.J.1
  • 20
    • 39849102970 scopus 로고    scopus 로고
    • Backbone structure of the infectious e15 virus capsid revealed by electron cryomicroscopy
    • Jiang, W. et al. Backbone structure of the infectious e15 virus capsid revealed by electron cryomicroscopy. Nature 451, 1130-1134 (2008).
    • (2008) Nature , vol.451 , pp. 1130-1134
    • Jiang, W.1
  • 21
    • 41149086034 scopus 로고    scopus 로고
    • Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction
    • Zhang, X. et al. Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction. Proc. Natl Acad. Sci. USA 105, 1867-1872 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 1867-1872
    • Zhang, X.1
  • 22
    • 43749092377 scopus 로고    scopus 로고
    • 3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy
    • Yu, X., Jin, L. & Zhou, Z. H. 3.88 A structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy. Nature 453, 415-419 (2008).
    • (2008) Nature , vol.453 , pp. 415-419
    • Yu, X.1    Jin, L.2    Zhou, Z.H.3
  • 23
    • 0028885711 scopus 로고
    • Conformational variability in the refined ° structure of the chaperonin GroEL at 2.8 A resolution
    • Braig, K., Adams, P. D. & Brünger, A. T. Conformational variability in the refined ° structure of the chaperonin GroEL at 2.8 A resolution. Nature Struct. Biol. 2, 1083-1094 (1995).
    • (1995) Nature Struct. Biol. , vol.2 , pp. 1083-1094
    • Braig, K.1    Adams, P.D.2    Brünger, A.T.3
  • 24
    • 0034636980 scopus 로고    scopus 로고
    • Domain rotations between open, closed and bullet-shaped forms of the thermosome, an archaeal chaperonin
    • Schoehn, G., Hayes, M., Cliff, M., Clarke, A. R. & Saibil, H. R. Domain rotations between open, closed and bullet-shaped forms of the thermosome, an archaeal chaperonin. J. Mol. Biol. 301, 323-332 (2000).
    • (2000) J. Mol. Biol. , vol.301 , pp. 323-332
    • Schoehn, G.1    Hayes, M.2    Cliff, M.3    Clarke, A.R.4    Saibil, H.R.5
  • 25
    • 36749078686 scopus 로고    scopus 로고
    • Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution
    • Schröder, G. F., Brunger, A. T. & Levitt, M. Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. Structure 15, 1630-1641 (2007).
    • (2007) Structure , vol.15 , pp. 1630-1641
    • Schröder, G.F.1    Brunger, A.T.2    Levitt, M.3
  • 27
    • 0029664944 scopus 로고    scopus 로고
    • The 2.4 A crystal structure of the bacterial chaperonin GroEL complexed with ATPcS
    • Boisvert, D. C., Wang, J., Otwinowski, Z., Horwich, A. L. & Sigler, P. B. The 2.4 A crystal structure of the bacterial chaperonin GroEL complexed with ATPcS. Nature Struct. Biol. 3, 170-177 (1996).
    • (1996) Nature Struct. Biol. , vol.3 , pp. 170-177
    • Boisvert, D.C.1    Wang, J.2    Otwinowski, Z.3    Horwich, A.L.4    Sigler, P.B.5
  • 28
    • 33646897305 scopus 로고    scopus 로고
    • Structural features of the GroEL-GroES nano-cage required for rapid folding of encapsulated protein
    • Tang, Y. C. et al. Structural features of the GroEL-GroES nano-cage required for rapid folding of encapsulated protein. Cell 125, 903-914 (2006).
    • (2006) Cell , vol.125 , pp. 903-914
    • Tang, Y.C.1
  • 29
    • 53049084967 scopus 로고    scopus 로고
    • Effect of the C-terminal truncation on the functional cycle of chaperonin GroEL: Implication that the C-terminal region facilitates the transition from the folding-arrested to the folding-competent state
    • Suzuki, M. et al. Effect of the C-terminal truncation on the functional cycle of chaperonin GroEL: implication that the C-terminal region facilitates the transition from the folding-arrested to the folding-competent state. J. Biol. Chem. 283, 23931-23939 (2008).
    • (2008) J. Biol. Chem. , vol.283 , pp. 23931-23939
    • Suzuki, M.1
  • 30
    • 0033377664 scopus 로고    scopus 로고
    • EMAN:semiautomated software for high-resolution single-particle reconstructions
    • Ludtke, S. J., Baldwin, P. R. & Chiu, W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 128, 82-97 (1999).
    • (1999) J. Struct. Biol. , vol.128 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 31
    • 61449100438 scopus 로고    scopus 로고
    • Estimating contrast transfer function and associated parameters by constrained nonlinear optimization
    • Yang, C. et al. Estimating contrast transfer function and associated parameters by constrained nonlinear optimization. J. Microsc. 233, 391-403 (2009).
    • (2009) J. Microsc. , vol.233 , pp. 391-403
    • Yang, C.1
  • 32
    • 0035940689 scopus 로고    scopus 로고
    • A 11.5 a single particle reconstruction of GroEL using EMAN
    • Ludtke, S. J., Jakana, J., Song, J.-L., Chuang, D. & Chiu, W. A 11.5 A single particle reconstruction of GroEL using EMAN. J. Mol. Biol. 314, 253-262 (2001).
    • (2001) J. Mol. Biol. , vol.314 , pp. 253-262
    • Ludtke, S.J.1    Jakana, J.2    Song, J.-L.3    Chuang, D.4    Chiu, W.5
  • 33
    • 0000313739 scopus 로고
    • Exact filters for general geometry three dimensional reconstruction
    • Harauz, G. & van Heel, M. Exact filters for general geometry three dimensional reconstruction. Optik 73, 146-156 (1986).
    • (1986) Optik , vol.73 , pp. 146-156
    • Harauz, G.1    Van Heel, M.2
  • 34
    • 51549084591 scopus 로고    scopus 로고
    • Sharpening high resolution information in single particle electron cryomicroscopy
    • Fernández, J. J., Luque, D., Caston, J. R. & Carrascosa, J. L. Sharpening high resolution information in single particle electron cryomicroscopy. J. Struct. Biol. 164, 170-175 (2008).
    • (2008) J. Struct. Biol. , vol.164 , pp. 170-175
    • Fernández, J.J.1    Luque, D.2    Caston, J.R.3    Carrascosa, J.L.4
  • 35
    • 0142042865 scopus 로고    scopus 로고
    • Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy
    • Rosenthal, P. B. & Henderson, R. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J. Mol. Biol. 333, 721-745 (2003).
    • (2003) J. Mol. Biol. , vol.333 , pp. 721-745
    • Rosenthal, P.B.1    Henderson, R.2
  • 36
    • 4444221565 scopus 로고    scopus 로고
    • UCSF Chimera-a visualization system for exploratory research and analysis
    • Pettersen, E. F. et al. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25, 1605-1612 (2004).
    • (2004) J. Comput. Chem. , vol.25 , pp. 1605-1612
    • Pettersen, E.F.1
  • 37
    • 32144432437 scopus 로고    scopus 로고
    • The SWISS-MODEL workspace: A web-based environment for protein structure homology modelling
    • Arnold, K., Bordoli, L., Kopp, J. & Schwede, T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22, 195-201 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 195-201
    • Arnold, K.1    Bordoli, L.2    Kopp, J.3    Schwede, T.4
  • 38
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132 (2004).
    • (2004) Acta Crystallogr. , vol.D60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 39
    • 0037441653 scopus 로고    scopus 로고
    • Structure validation by Ca geometry: W, y and Cb deviation
    • Lovell, S. C. et al. Structure validation by Ca geometry: w, y and Cb deviation. Proteins 50, 437-450 (2003).
    • (2003) Proteins , vol.50 , pp. 437-450
    • Lovell, S.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.