Counterion Distribution around DNA Probed by Solution X-Ray Scattering

Physical Review Letters

Volumn 90, Issue 18, 2003, Pages 4-

  Das, R ^a   Mills, T T ^b   Kwok, L W ^b   Maskel, G S ^b   Millett, I S ^a   Doniach, S ^a   Finkelstein, K D ^c   Herschlag, D ^a   Pollack, L ^b  

^a STANFORD UNIVERSITY   (United States)

^b Department of Materials Science and Engineering   (United States)

^c Department of Population Medicine and Diagnostic Sciences   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CATION; DNA; METAL; SOLUTION AND SOLUBILITY;

CHEMISTRY; CONFORMATION; RADIATION SCATTERING; SOLUTION AND SOLUBILITY; STATIC ELECTRICITY; X RAY;

CATIONS; DNA; METALS; NUCLEIC ACID CONFORMATION; SCATTERING, RADIATION; SOLUTIONS; STATIC ELECTRICITY; X-RAYS;

AMMONIUM COMPOUNDS; BIOPOLYMERS; DNA; MATHEMATICAL MODELS; MOLECULES; POSITIVE IONS; SYNCHROTRONS; X RAY SCATTERING;

CHARGED BIOPOLYMERS; COUNTERION; ION SCATTERING; SMALL ANGLE X RAY SCATTERING TECHNIQUES;

BIOCHEMISTRY;

EID: 0037928815     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.90.188103     Document Type: Article

References (38)

1. A.L. Feig and O.C. Uhlenbeck, in The RNA World, edited by R.F. Gesteland, T.R. Cech, and J.F. Atkins (Cold Spring Harbor Laboratory Press, New York, 1999), pp.�287–319.
2. C.F. Anderson and M.T. Record, Jr., Annu. Rev. Biophys. Biophys. Chem. 19, 423 (1990).
3. R.M. Fuoss, A. Katchalsky, and S. Lifson, Proc. Natl. Acad. Sci. U.S.A.PNASA6 37, 579 (1951).
4. G.S. Manning, J. Chem. Phys.JCPSA6 51, 924 (1969).
5. P.L. Hansen, R. Podgornik, and V.A. Parsegian, Phys. Rev. EPLEEE810.1103/PhysRevE.64.021907 64, 021907 (2001).
6. V.K. Misra and D.E. Draper, J. Mol. Biol.10.1006/jmbi.2000.3769 299, 813 (2000), and references therein;
7. also, J.L. Hecht et al, J. Phys. Chem. 99, 7782 (1995).
8. S.W. Chen and B. Honig, J. Phys. Chem. B10.1021/jp971521k 101, 9113 (1997).
9. G.R. Pack, L. Wong, and G. Lamm, Biopolymers10.1002/(SICI)1097-0282(199906)49:7<575::AID-BIP4>3.0.CO;2-J 49, 575 (1999);
10. C.N. Patra and A. Yethiraj, J. Phys. Chem. B10.1021/jp991062i 103, 6080 (2000);
11. M. Deserno, C. Holm, and S. May, Macromolecules10.1021/ma990897o 33, 199 (2000).
12. R. Podgornik, D.C. Rau, and V.A. Parsegian, Macromolecules 22, 1780 (1989).
13. T.G. Wensel et al, Proc. Natl. Acad. Sci. U.S.A.PNASA6 83, 3267 (1986).
14. A.?Yu. Grosberg, T.T. Nguyen, and B.I. Shklovskii, Rev. Mod. Phys.10.1103/RevModPhys.74.329 74, 329 (2002);
15. N. Grønbech-Jensen et al, Phys. Rev. Lett.10.1103/PhysRevLett.78.2477 78, 2477 (1997).
16. R. Russell et al, Nat. Struct. Biol.10.1038/75132 7, 367 (2000);
17. S.L. Heilman-Miller, D. Thirumalai, and S.A. Woodson, J. Mol. Biol.10.1006/jmbi.2001.4437 306, 1157 (2001);
18. R. Russell et al, Proc. Natl. Acad. Sci. U.S.A.PNASA610.1073/pnas.072589599 99, 4266 (2002).
19. V.A. Bloomfield, Biopolymers10.1002/(SICI)1097-0282(1997)44:3<269::AID-BIP6>3.0.CO;2-T 44, 269 (1997).
20. V. Luzzati, A. Nicolaieff, and F. Masson, J. Mol. Biol. 3, 185 (1961);
21. V. Luzzati et al, Biopolymers 5, 491 (1967);
22. S. Bram and W.W. Beeman, J. Mol. Biol. 55, 311 (1971 ).
23. S.S. Zakharova et al, J. Chem. Phys.JCPSA610.1063/1.480425 111, 10706 (1999).
24. G. Zaccai and S.-Y. Xian, Biochemistry 27, 1316 (1988).
25. A. Naudon, in Modern Aspects of Small-Angle Scattering, edited by H. Brumberger (Kluwer, Netherlands, 1995), p.�203.
26. B. Guilleaume et al, Colloid Polym. Sci.CPMSB610.1007/s003960100521 279, 829 (2001); ASAXS has also recently been applied to condensed DNA fibers [N.O. Kozlova and H.H. Strey (unpublished)].
27. S.-L. Chang et al, J. Phys. Chem. 94, 8025 (1990).
28. K.D. Finkelstein, P.M. Abbamonte, and V.O. Kostroun, Proc. SPIE 4783, 139 (2002).
29. J.J. Hoyt, D. de Fontaine, and W.K. Warburton, J. Appl. Crystallogr.10.1107/S0021889884011626 17, 344 (1984).
30. S. Doniach, Chem. Rev.10.1021/cr990071k 101, 1763 (2001).
31. Y. Liu and D.L. Beveridge, J. Biomol. Struct. Dyn.JBSDD6 18, 505 (2001).
32. D. Svergun, C. Barberato, and M.H.J. Koch, J. Appl. Crystallogr.10.1107/S0021889895007047 28, 768 (1995).
33. B. Guilleaume et al, J. Phys. Condens. Matter 12, A245 (2000);
34. C.F. Wu et al, Phys. Rev. Lett.10.1103/PhysRevLett.61.645 61, 645 (1988);
35. W. Essafi, F. Lafuma, and C. Williams, Eur. Phys. J. B10.1007/s100510050765 9, 261 (1999).
36. V. Tereshko et al, Nucleic Acids Res, 29, 1208 (2001).
37. K.D. Collins, Biophys. J. 72, 65 (1997).
38. F.J. Millero, Chem. Rev. 71, 147 (1971).