Modelling of bacteriophage capsids and free nucleic acids

Journal of Applied Crystallography

Volumn 40, Issue SUPPL. 1, 2007, Pages

  Zipper, Peter ^a   Durchschlag, Helmut ^b  

^a UNIVERSITY OF GRAZ   (Austria)

^b UNIVERSITY OF REGENSBURG   (Germany)

Author keywords

Bacteriophages; Capsids; Modelling approaches; Nucleic acids; Small angle X ray scattering

Indexed keywords

MIRIDAE;

EID: 34248388501     PISSN: 00218898     EISSN: 16005767     Source Type: Journal    
DOI: 10.1107/S0021889807005936     Document Type: Conference Paper

References (35)

1. Avila, R., He, T., Hong, L., Kaufman, A., Pfister, H., Silva, C., Sobierajski, L. & Wang, S. (1994). Proceedings IEEE Visualization '94, edited by R. Bergeron & A. Kaufman, pp. 31-38. Washington DC: IEEE Computer Society.
2. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
3. Chacón, P., Díaz, J. F., Morán, F. & Andreu, J. M. (2000). J. Mol. Biol. 299, 1289-1302.
4. Chacón, P., Morán, F., Díaz, J. F., Pantos, E. & Andreu, J. M. (1998). Biophys. J. 74, 2760-2775.
5. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
6. Durchschlag, H. & Zipper, P. (2001). Biophys. Chem. 93, 141-157.
7. Durchschlag, H. & Zipper, P. (2002). J. Phys. Condens. Matter, 14, 2439-2452.
8. Durchschlag, H. & Zipper, P. (2003). Eur. Biophys. J. 32, 487-502.
9. Durchschlag, H. & Zipper, P. (2005). Analytical Ultracentrifugation: Techniques and Methods, edited by D. J. Scott, S. E. Harding & A. J. Rowe, pp. 389-431. Cambridge: Royal Society of Chemistry.
10. Fiers, W., Contreras, R., Duerinck, F., Haegeman, G., Iserentant, D., Merregaert, J., Min Jou, W., Molemans, F., Raeymaekers, A., Van den Berghe, A., Volckaert, G. & Ysebaert, M. (1976). Nature (London), 260, 500-507.
11. Funari, S. S., Rapp, G., Perbandt, M., Dierks, K., Vallazza, M., Betzel, C., Erdmann, V. A. & Svergun, D. I. (2000). J. Biol. Chem. 275, 31283-31288.
12. García de la Torre, J., Huertas, M. L. & Carrasco, B. (2000). Biophys. J. 78, 719-730.
13. García de la Torre, J., Navarro, S., López Martínez, M. C., Díaz, F. G. & López Cascales, J. J. (1994). Biophys. J. 67, 530-531.
14. Glatter, O. (1980). Acta Phys. Austriaca, 52, 243-256.
15. Glatter, O. & Kratky, O. (1982). Editors. Small Angle X-ray Scattering. London: Academic Press.
16. Golmohammadi, R., Valegård, K., Fridborg, K. & Liljas, L. (1993). J. Mol. Biol. 234, 620-639.
17. Koch, M. H. J., Vachette, P. & Svergun, D. I. (2003). Q. Rev. Biophys. 36, 147-227.
18. Kuzmanovic, D. A., Elashvili, I., Wick, C., O'Connell, C. & Krueger, S. (2003). Structure, 11, 1339-1348.
19. Liljas, L., Fridborg, K., Valegård, K., Bundule, M. & Pumpens, P. (1994). J. Mol. Biol. 244, 279-290.
20. Ribitsch, G., De Clercq, R., Folkhard, W., Zipper, P., Schurz, J. & Clauwaert, J. (1985). Z. Naturforsch. 40c, 234-241.
21. Sayle, R. A. & Milner-White, E. J. (1995). Trends Biochem. Sci. 20, 374-376.
22. Slegers, H., Clauwaert, J. & Fiers, W. (1973). Biopolymers, 12, 2033-2044.
23. Svergun, D. I. (1992). J. Appl. Cryst. 25, 495-503.
24. Svergun, D. I. (1999). Biophys. J. 76, 2879-2886.
25. Svergun, D. I. (2000) J. Appl. Cryst. 33, 530-534.
26. Svergun, D. I. & Koch, M. H. J. (2003). Rep. Prog. Phys. 66, 1735-1782.
27. Takahashi, Y., Nishikawa, Y. & Fujisawa, T. (2003). J. Appl. Cryst. 36, 549-552.
28. Volkov, V. V. & Svergun, D. I. (2003). J. Appl. Cryst. 36, 860-864.
29. Vorobjev, Y. N. & Hermans, J. (1997). Biophys. J. 73, 722-732.
30. Zipper, P. (1982). Small Angle X-ray Scattering, edited by O. Glatter & O. Kratky, pp. 295-328. London: Academic Press.
31. Zipper, P. & Durchschlag, H. (2003). J. Appl. Cryst. 36, 509-514.
32. Zipper, P., Durchschlag, H. & Krebs, A. (2005). Analytical Ultracentrifugation: Techniques and Methods, edited by D. J. Scott, S. E. Harding & A. J. Rowe, pp. 320-371. Cambridge: Royal Society of Chemistry.
33. Zipper, P., Folkhard, W. & Clauwaert, J. (1975). FEBS Lett. 56, 283-287.
34. Zipper, P., Kratky, O., Herrmann, R. & Hohn, T. (1971). Eur. J. Biochem. 18, 1-9.
35. Zipper, P., Schubert, D. & Vogt, J. (1973). Eur. J. Biochem. 36, 301-310.