Polyubiquitin recognition by AtSAP5, an A20-type zinc finger containing protein from Arabidopsis thaliana

Biochemical and Biophysical Research Communications

Volumn 419, Issue 2, 2012, Pages 436-440

  Choi, Hoon ^a   Han, Seungsoo ^a   Shin, Donghyuk ^a   Lee, Sangho ^a  

^a Sungkyunkwan University   (South Korea)

Author keywords

A20 type zinc finger; AtSAP5; Dialipathic patch; Polyubiquitin; Stress associated proteins

Indexed keywords

ARABIDOPSIS THALIANA SAP5 PROTEIN; MONOUBIQUITIN; POLYUBIQUITIN; UBIQUINOL CYTOCHROME C REDUCTASE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN; ZINC FINGER PROTEIN;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; IN VITRO STUDY; PRIORITY JOURNAL; PROTEIN BINDING; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; MOLECULAR SEQUENCE DATA; POLYUBIQUITIN; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; UBIQUITIN-PROTEIN LIGASES; ZINC FINGERS;

ANIMALIA; ARABIDOPSIS THALIANA;

EID: 84862827403     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2012.02.044     Document Type: Article

References (24)

1. Hershko A., Ciechanover A. The ubiquitin system. Annu. Rev. Biochem. 1998, 67:425-479.
2. Pickart C.M. Mechanisms underlying ubiquitination. Annu. Rev. Biochem. 2001, 70:503-533.
3. Li W., Ye Y. Polyubiquitin chains: functions, structures, and mechanisms. Cell Mol. Life Sci. 2008, 65:2397-2406.
4. Pickart C.M., Fushman D. Polyubiquitin chains: polymeric protein signals. Curr. Opin. Chem. Biol. 2004, 8:610-616.
5. Tokunaga F., Sakata S., Saeki Y., Satomi Y., Kirisako T., Kamei K., Nakagawa T., Kato M., Murata S., Yamaoka S., Yamamoto M., Akira S., Takao T., Tanaka K., Iwai K. Involvement of linear polyubiquitylation of NEMO in NF-κB activation. Nat. Cell Biol. 2009, 11:123-132.
6. Iwai K., Tokunaga F. Linear polyubiquitination: a new regulator of NF-κB activation. EMBO Rep. 2009, 10:706-713.
7. Dikic I., Wakatsuki S., Walters K.J. Ubiquitin-binding domains - from structures to functions. Nat. Rev. Mol. Cell Biol. 2009, 10:659-671.
8. Hurley J.H., Lee S., Prag G. Ubiquitin-binding domains. Biochem. J. 2006, 399:361-372.
9. van Nocker S., Deveraux Q., Rechsteiner M., Vierstra R.D. Arabidopsis MBP1 gene encodes a conserved ubiquitin recognition component of the 26S proteasome. Proc. Natl. Acad. Sci. USA 1996, 93:856-860.
10. Veiseth S.V., Rahman M.A., Yap K.L., Fischer A., Egge-Jacobsen W., Reuter G., Zhou M.-M., Aalen R.B., Thorstensen T. The SUVR4 histone lysine methyltransferase binds ubiquitin and converts H3K9me1 to H3K9me3 on transposon chromatin in Arabidopsis. PLoS Genet. 2011, 7:e1001325.
11. Wertz I.E., O'Rourke K.M., Zhou H., Eby M., Aravind L., Seshagiri S., Wu P., Wiesmann C., Baker R., Boon D.L., Ma A., Koonin E.V., Dixit V.M. De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-κB signalling. Nature 2004, 430:694-699.
12. Lee S., Tsai Y.C., Mattera R., Smith W.J., Kostelansky M.S., Weissman A.M., Bonifacino J.S., Hurley J.H. Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5. Nat. Struct. Mol. Biol. 2006, 13:264-271.
13. Penengo L., Mapelli M., Murachelli A.G., Confalonieri S., Magri L., Musacchio A., Di Fiore P.P., Polo S., Schneider T.R. Crystal structure of the ubiquitin binding domains of rabex-5 reveals two modes of interaction with ubiquitin. Cell 2006, 124:1183-1195.
14. Mattera R., Tsai Y.C., Weissman A.M., Bonifacino J.S. The Rab5 guanine nucleotide exchange factor Rabex-5 binds ubiquitin (Ub) and functions as a Ub ligase through an atypical Ub-interacting motif and a zinc finger domain. J. Biol. Chem. 2006, 281:6874-6883.
15. Vij S., Tyagi A.K. Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger(s) in rice and their phylogenetic relationship with Arabidopsis. Mol. Genet. Genomics 2006, 276:565-575.
16. Vij S., Tyagi A.K. A20/AN1 zinc-finger domain-containing proteins in plants and animals represent common elements in stress response. Funct. Integr. Genomics 2008, 8:301-307.
17. Kang M., Fokar M., Abdelmageed H., Allen R.D. Arabidopsis SAP5 functions as a positive regulator of stress responses and exhibits E3 ubiquitin ligase activity. Plant Mol. Biol. 2011, 75:451-466.
18. Cho H.J., Lee S., Kim H. The linker connecting the tandem ubiquitin binding domains of RAP80 is criticial for lysine 63-linked polyubiquitin-dependent binding activity. BMB Rep. 2009, 42:764-768.
19. Bosanac I., Wertz I.E., Pan B., Yu C., Kusam S., Lam C., Phu L., Phung Q., Mauer B., Arnott D., Kirkpatrick D.S., Dixit V.M., Hymowitz S.G. Ubiquitin binding to A20 ZnF4 is required for modulation of NF-κB signaling. Mol. Cell 2010, 40:548-557.
20. Sims J.J., Cohen R.E. Linkage-specific avidity defines the lysine 63-linked polyubiquitin-binding preferences of RAP80. Mol. Cell 2009, 33:775-783.
21. Markin C.J., Xiao W., Spyracopoulos L. Mechanisms for recognition of polyubiquitin chains: balancing affinity through interplay between multivalent binding and dynamics. J. Am. Chem. Soc. 2010, 132:11247-11258.
22. Xu L., Lubkov V., Taylor L.J., Bar-Sagi D. Feedback regulation of Ras signaling by Rabex-5-mediated ubiquitination. Curr. Biol. 2010, 20:1372-1377.
23. Yan H., Jahanshahi M., Horvath E.A., Liu H.Y., Pfleger C.M. Rabex-5 ubiquitin ligase activity restricts Ras signaling to establish pathway homeostatis in Drosophila. Curr. Biol. 2010, 20:1378-1382.
24. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilim A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.