-
1
-
-
0035369531
-
Protein-protein interaction maps: a lead towards cellular functions
-
10.1016/S0168-9525(01)02323-X, 11377797
-
Legrain P, Wojcik J, Gauthier JM. Protein-protein interaction maps: a lead towards cellular functions. Trends in Genetics 2001, 17(6):346-352. 10.1016/S0168-9525(01)02323-X, 11377797.
-
(2001)
Trends in Genetics
, vol.17
, Issue.6
, pp. 346-352
-
-
Legrain, P.1
Wojcik, J.2
Gauthier, J.M.3
-
2
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
10.1126/science.1158684, 2746753, 18719252
-
Yu HY, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, Smet AS, Motyl A, Hudson ME, Park J, Xin XF, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, et al. High-quality binary protein interaction map of the yeast interactome network. Science 2008, 322:104-110. 10.1126/science.1158684, 2746753, 18719252.
-
(2008)
Science
, vol.322
, pp. 104-110
-
-
Yu, H.Y.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
Sahalie, J.6
Hirozane-Kishikawa, T.7
Gebreab, F.8
Li, N.9
Simonis, N.10
Hao, T.11
Rual, J.F.12
Dricot, A.13
Vazquez, A.14
Murray, R.R.15
Simon, C.16
Tardivo, L.17
Tam, S.18
Svrzikapa, N.19
Fan, C.20
Smet, A.S.21
Motyl, A.22
Hudson, M.E.23
Park, J.24
Xin, X.F.25
Cusick, M.E.26
Moore, T.27
Boone, C.28
Snyder, M.29
Roth, F.P.30
more..
-
3
-
-
0033618555
-
Detecting protein function and protein-protein interactions from genome sequences
-
10.1126/science.285.5428.751, 10427000
-
Marcotte EM, Pellegrini M, Ng HL, Rice DW, Yeates TO, Eisenberg D. Detecting protein function and protein-protein interactions from genome sequences. Science 1999, 285(5428):751-753. 10.1126/science.285.5428.751, 10427000.
-
(1999)
Science
, vol.285
, Issue.5428
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
4
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
10.1038/415180a, 11805837
-
Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang LY, Wolting C, Donaldson L, Schandorff S, Shewnarane J, Vo M, Taggart J, Goudreault M, Muskat B, Alfarano C, Dewar D, Lin Z, Michalickova K, Willems AR, Sassi H, Nielsen PA, Rasmussen KJ, Andersen JR, Johansen LE, Hansen LH, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 2002, 415:180-183. 10.1038/415180a, 11805837.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.Y.11
Wolting, C.12
Donaldson, L.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
more..
-
5
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
10.1038/415141a, 11805826
-
Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM, Remor M, Hofert C, Schelder M, Brajenovic M, Ruffner H, Merino A, Klein K, Hudak M, Dickson D, Rudi T, Gnau V, Bauch A, Bastuck S, Huhse B, Leutwein C, Heutier MA, Copley RR, Edelmann A, Querfurth E, Rybin V, et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 2002, 415:141-147. 10.1038/415141a, 11805826.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heutier, M.A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
more..
-
6
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
10.1073/pnas.061034498, 31875, 11283351
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proceedings of the National Academy of Sciences of the United States of America 2001, 98(8):4569-4574. 10.1073/pnas.061034498, 31875, 11283351.
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.8
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
7
-
-
48249113784
-
Predicting and Validating Protein Interactions Using Network Structure
-
Chen PY, Deane CM, Reinert G. Predicting and Validating Protein Interactions Using Network Structure. Plos Computational Biology 2008, 4(7):1-11.
-
(2008)
Plos Computational Biology
, vol.4
, Issue.7
, pp. 1-11
-
-
Chen, P.Y.1
Deane, C.M.2
Reinert, G.3
-
8
-
-
33847744247
-
How complete are current yeast and human protein-interaction networks?
-
Hart GT, Ramani AK, Marcotte EM. How complete are current yeast and human protein-interaction networks?. Genome Biology 2006, 7.
-
(2006)
Genome Biology
, pp. 7
-
-
Hart, G.T.1
Ramani, A.K.2
Marcotte, E.M.3
-
9
-
-
0037161731
-
Comparative assessment of large-scale data sets of protein-protein interactions
-
von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002, 417:399-403.
-
(2002)
Nature
, vol.417
, pp. 399-403
-
-
von Mering, C.1
Krause, R.2
Snel, B.3
Cornell, M.4
Oliver, S.G.5
Fields, S.6
Bork, P.7
-
10
-
-
0036580169
-
Protein interactions - Two methods for assessment of the reliability of high throughput observations
-
10.1074/mcp.M100037-MCP200, 22238803
-
Deane CM, Salwinski L, Xenarios I, Eisenberg D. Protein interactions - Two methods for assessment of the reliability of high throughput observations. Molecular & Cellular Proteomics 2002, 1:349-356. 10.1074/mcp.M100037-MCP200, 22238803.
-
(2002)
Molecular & Cellular Proteomics
, vol.1
, pp. 349-356
-
-
Deane, C.M.1
Salwinski, L.2
Xenarios, I.3
Eisenberg, D.4
-
11
-
-
0035211290
-
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs"
-
10.1101/gr.205301, 311221, 11731503
-
Matthews LR, Vaglio P, Reboul J, Ge H, Davis BP, Garrels J, Vincent S, Vidal M. Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". Genome Research 2001, 11:2120-2126. 10.1101/gr.205301, 311221, 11731503.
-
(2001)
Genome Research
, vol.11
, pp. 2120-2126
-
-
Matthews, L.R.1
Vaglio, P.2
Reboul, J.3
Ge, H.4
Davis, B.P.5
Garrels, J.6
Vincent, S.7
Vidal, M.8
-
12
-
-
34848835475
-
Structure-templated predictions of novel protein interactions from sequence information
-
1988853, 17892321
-
Betel D, Breitkreuz KE, Isserlin R, Dewar-Darch D, Tyers M, Hogue CWV. Structure-templated predictions of novel protein interactions from sequence information. Plos Computational Biology 2007, 3(9):1783-1789. 1988853, 17892321.
-
(2007)
Plos Computational Biology
, vol.3
, Issue.9
, pp. 1783-1789
-
-
Betel, D.1
Breitkreuz, K.E.2
Isserlin, R.3
Dewar-Darch, D.4
Tyers, M.5
Hogue, C.W.V.6
-
13
-
-
38949138554
-
Computational prediction of protein-protein interactions
-
10.1007/s12033-007-0069-2, 18095187
-
Skrabanek L, Saini HK, Bader GD, Enright AJ. Computational prediction of protein-protein interactions. Molecular Biotechnology 2008, 38:1-17. 10.1007/s12033-007-0069-2, 18095187.
-
(2008)
Molecular Biotechnology
, vol.38
, pp. 1-17
-
-
Skrabanek, L.1
Saini, H.K.2
Bader, G.D.3
Enright, A.J.4
-
14
-
-
33846086800
-
STRING 7 - recent developments in the integration and prediction of protein interactions
-
10.1093/nar/gkl825, 1669762, 17098935
-
von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Kruger B, Snel B, Bork P. STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Research 2007, 35:D358-D362. 10.1093/nar/gkl825, 1669762, 17098935.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
von Mering, C.1
Jensen, L.J.2
Kuhn, M.3
Chaffron, S.4
Doerks, T.5
Kruger, B.6
Snel, B.7
Bork, P.8
-
15
-
-
13444272070
-
The Biomolecular Interaction Network Database and related tools 2005 update
-
540005, 15608229
-
Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, Buzadzija K, Cavero R, Abreo CD, Donaldson I, Dorairajoo D, Dumontier MJ, Dumontier MR, Earles V, Farrall R, Feldman H, Garderman E, Gong Y, Gonzaga R, Grytsan V, Gryz E, Gu V, Haldorsen E, Halupa A, Haw R, Hrvojic A, et al. The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Research 2005, 33:D418-D424. 540005, 15608229.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Alfarano, C.1
Andrade, C.E.2
Anthony, K.3
Bahroos, N.4
Bajec, M.5
Bantoft, K.6
Betel, D.7
Bobechko, B.8
Boutilier, K.9
Burgess, E.10
Buzadzija, K.11
Cavero, R.12
Abreo, C.D.13
Donaldson, I.14
Dorairajoo, D.15
Dumontier, M.J.16
Dumontier, M.R.17
Earles, V.18
Farrall, R.19
Feldman, H.20
Garderman, E.21
Gong, Y.22
Gonzaga, R.23
Grytsan, V.24
Gryz, E.25
Gu, V.26
Haldorsen, E.27
Halupa, A.28
Haw, R.29
Hrvojic, A.30
more..
-
16
-
-
0347755535
-
The Database of Interacting Proteins: 2004 update
-
10.1093/nar/gkh086, 308820, 14681454
-
Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D. The Database of Interacting Proteins: 2004 update. Nucleic Acids Research 2004, 32:D449-D451. 10.1093/nar/gkh086, 308820, 14681454.
-
(2004)
Nucleic Acids Research
, vol.32
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
17
-
-
58149193222
-
Human Protein Reference Database-2009 update
-
10.1093/nar/gkn892, 2686490, 18988627
-
Prasad TSK, Goel R, Kandasamy K, Keerthikumar S, Kumar S, Mathivanan S, Telikicherla D, Raju R, Shafreen B, Venugopal A, Balakrishnan L, Marimuthu A, Banerjee S, Somanathan DS, Sebastian A, Rani S, Ray S, Kishore CJH, Kanth S, Ahmed M, Kashyap MK, Mohmood R, Ramachandra YL, Krishna V, Rahiman BA, Mohan S, Ranganathan P, Ramabadran S, Chaekady R, Pandey A. Human Protein Reference Database-2009 update. Nucleic Acids Research 2009, 37:D767-D772. 10.1093/nar/gkn892, 2686490, 18988627.
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Prasad, T.S.K.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
Mathivanan, S.6
Telikicherla, D.7
Raju, R.8
Shafreen, B.9
Venugopal, A.10
Balakrishnan, L.11
Marimuthu, A.12
Banerjee, S.13
Somanathan, D.S.14
Sebastian, A.15
Rani, S.16
Ray, S.17
Kishore, C.J.H.18
Kanth, S.19
Ahmed, M.20
Kashyap, M.K.21
Mohmood, R.22
Ramachandra, Y.L.23
Krishna, V.24
Rahiman, B.A.25
Mohan, S.26
Ranganathan, P.27
Ramabadran, S.28
Chaekady, R.29
Pandey, A.30
more..
-
18
-
-
75549083295
-
MINT, the molecular interaction database: 2009 update
-
10.1093/nar/gkp983, 2808973, 19897547
-
Ceol A, Aryamontri AC, Licata L, Peluso D, Briganti L, Perfetto L, Castagnoli L, Cesareni G. MINT, the molecular interaction database: 2009 update. Nucleic Acids Research 2010, 38:D532-D539. 10.1093/nar/gkp983, 2808973, 19897547.
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Ceol, A.1
Aryamontri, A.C.2
Licata, L.3
Peluso, D.4
Briganti, L.5
Perfetto, L.6
Castagnoli, L.7
Cesareni, G.8
-
19
-
-
33846047770
-
IntAct - open source resource for molecular interaction data
-
10.1093/nar/gkl958, 1751531, 17145710
-
Kerrien S, Alam-Faruque Y, Aranda B, Bancarz I, Bridge A, Derow C, Dimmer E, Feuermann M, Friedrichsen A, Huntley R, Kohler C, Khadake J, Leroy C, Liban A, Lieftink C, Montecchi-Palazzi L, Orchard S, Risse J, Robbe K, Roecher B, Thorneycroft D, Zhang Y, Apweiler R, Hermjakob H. IntAct - open source resource for molecular interaction data. Nucleic Acids Research 2007, 35:D561-D565. 10.1093/nar/gkl958, 1751531, 17145710.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
Bridge, A.5
Derow, C.6
Dimmer, E.7
Feuermann, M.8
Friedrichsen, A.9
Huntley, R.10
Kohler, C.11
Khadake, J.12
Leroy, C.13
Liban, A.14
Lieftink, C.15
Montecchi-Palazzi, L.16
Orchard, S.17
Risse, J.18
Robbe, K.19
Roecher, B.20
Thorneycroft, D.21
Zhang, Y.22
Apweiler, R.23
Hermjakob, H.24
more..
-
20
-
-
78651328883
-
The BioGRID Interaction Database: 2011 update
-
10.1093/nar/gkq1116, 3013707, 21071413
-
Stark C, Breitkreutz BJ, Chatr-aryamontri A, Boucher L, Oughtred R, Livstone MS, Nixon J, Van Auken K, Wang XD, Shi XQ, Reguly T, Rust JM, Winter A, Dolinski K, Tyers M. The BioGRID Interaction Database: 2011 update. Nucleic Acids Research 2011, 39:D698-D704. 10.1093/nar/gkq1116, 3013707, 21071413.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Stark, C.1
Breitkreutz, B.J.2
Chatr-aryamontri, A.3
Boucher, L.4
Oughtred, R.5
Livstone, M.S.6
Nixon, J.7
Van Auken, K.8
Wang, X.D.9
Shi, X.Q.10
Reguly, T.11
Rust, J.M.12
Winter, A.13
Dolinski, K.14
Tyers, M.15
-
21
-
-
20144387067
-
The MIPS mammalian protein-protein interaction database
-
10.1093/bioinformatics/bti115, 15531608
-
Pagel P, Kovac S, Oesterheld M, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Mark P, Stumpflen V, Mewes HW, Ruepp A, Frishman D. The MIPS mammalian protein-protein interaction database. Bioinformatics 2005, 21(6):832-834. 10.1093/bioinformatics/bti115, 15531608.
-
(2005)
Bioinformatics
, vol.21
, Issue.6
, pp. 832-834
-
-
Pagel, P.1
Kovac, S.2
Oesterheld, M.3
Brauner, B.4
Dunger-Kaltenbach, I.5
Frishman, G.6
Montrone, C.7
Mark, P.8
Stumpflen, V.9
Mewes, H.W.10
Ruepp, A.11
Frishman, D.12
-
22
-
-
0037087575
-
Subcellular localization of the yeast proteome
-
10.1101/gad.970902, 22238756
-
Kumar A, Agarwal S, Heyman JA, Matson S, Heidtman M, Piccirillo S, Umansky L, Drawid A, Jansen R, Liu Y, Cheung KH, Miller P, Gerstein M, Roeder S, Snyder M. Subcellular localization of the yeast proteome. Genes & Development 2002, 16:707-719. 10.1101/gad.970902, 22238756.
-
(2002)
Genes & Development
, vol.16
, pp. 707-719
-
-
Kumar, A.1
Agarwal, S.2
Heyman, J.A.3
Matson, S.4
Heidtman, M.5
Piccirillo, S.6
Umansky, L.7
Drawid, A.8
Jansen, R.9
Liu, Y.10
Cheung, K.H.11
Miller, P.12
Gerstein, M.13
Roeder, S.14
Snyder, M.15
-
23
-
-
0142052944
-
A Bayesian networks approach for predicting protein-protein interactions from genomic data
-
10.1126/science.1087361, 14564010
-
Jansen R, Yu HY, Greenbaum D, Kluger Y, Krogan NJ, Chung SB, Emili A, Snyder M, Greenblatt JF, Gerstein M. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science 2003, 302:449-453. 10.1126/science.1087361, 14564010.
-
(2003)
Science
, vol.302
, pp. 449-453
-
-
Jansen, R.1
Yu, H.Y.2
Greenbaum, D.3
Kluger, Y.4
Krogan, N.J.5
Chung, S.B.6
Emili, A.7
Snyder, M.8
Greenblatt, J.F.9
Gerstein, M.10
-
24
-
-
0032568582
-
Measuring genome evolution
-
10.1073/pnas.95.11.5849, 34486, 9600883
-
Huynen MA, Bork P. Measuring genome evolution. Proceedings of the National Academy of Sciences of the United States of America 1998, 95:5849-5856. 10.1073/pnas.95.11.5849, 34486, 9600883.
-
(1998)
Proceedings of the National Academy of Sciences of the United States of America
, vol.95
, pp. 5849-5856
-
-
Huynen, M.A.1
Bork, P.2
-
25
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
-
10.1073/pnas.96.8.4285, 16324, 10200254
-
Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. Proceedings of the National Academy of Sciences of the United States of America 1999, 96:4285-4288. 10.1073/pnas.96.8.4285, 16324, 10200254.
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
26
-
-
57149118625
-
Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence
-
Kim WK, Marcotte EM. Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence. Plos Computational Biology 2008, 4(11).
-
(2008)
Plos Computational Biology
, vol.4
, Issue.11
-
-
Kim, W.K.1
Marcotte, E.M.2
-
27
-
-
23444452564
-
Probabilistic model of the human protein-protein interaction network
-
10.1038/nbt1103, 16082366
-
Rhodes DR, Tomlins SA, Varambally S, Mahavisno V, Barrette T, Kalyana-Sundaram S, Ghosh D, Pandey A, Chinnaiyan AM. Probabilistic model of the human protein-protein interaction network. Nature Biotechnology 2005, 23:951-959. 10.1038/nbt1103, 16082366.
-
(2005)
Nature Biotechnology
, vol.23
, pp. 951-959
-
-
Rhodes, D.R.1
Tomlins, S.A.2
Varambally, S.3
Mahavisno, V.4
Barrette, T.5
Kalyana-Sundaram, S.6
Ghosh, D.7
Pandey, A.8
Chinnaiyan, A.M.9
-
28
-
-
50949100075
-
Multi-agent-based bio-network for systems biology: protein-protein interaction network as an example
-
10.1007/s00726-008-0081-2, 18425405
-
Ren LH, Ding YS, Shen YZ, Zhang XF. Multi-agent-based bio-network for systems biology: protein-protein interaction network as an example. Amino Acids 2008, 35:565-572. 10.1007/s00726-008-0081-2, 18425405.
-
(2008)
Amino Acids
, vol.35
, pp. 565-572
-
-
Ren, L.H.1
Ding, Y.S.2
Shen, Y.Z.3
Zhang, X.F.4
-
29
-
-
67349200229
-
Interaction networks: From protein functions to drug discovery. A review
-
10.1016/j.patbio.2008.10.004, 19070972
-
Chautard E, Thierry-Mieg N, Ricard-Blum S. Interaction networks: From protein functions to drug discovery. A review. Pathologie Biologie 2009, 57:324-333. 10.1016/j.patbio.2008.10.004, 19070972.
-
(2009)
Pathologie Biologie
, vol.57
, pp. 324-333
-
-
Chautard, E.1
Thierry-Mieg, N.2
Ricard-Blum, S.3
-
30
-
-
0035799707
-
Lethality and centrality in protein networks
-
10.1038/35075138, 11333967
-
Jeong H, Mason SP, Barabasi AL, Oltvai ZN. Lethality and centrality in protein networks. Nature 2001, 411:41-42. 10.1038/35075138, 11333967.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
31
-
-
33846102063
-
Proteomics approaches to the systems biology of cardiovascular diseases
-
Drake TA, Ping PP. Proteomics approaches to the systems biology of cardiovascular diseases. Journal of Lipid Research 2007, 48:1-8.
-
(2007)
Journal of Lipid Research
, vol.48
, pp. 1-8
-
-
Drake, T.A.1
Ping, P.P.2
-
32
-
-
57149094027
-
Dynamic Changes in Protein Functional Linkage Networks Revealed by Integration with Gene Expression Data
-
Hegde SR, Manimaran P, Mande SC. Dynamic Changes in Protein Functional Linkage Networks Revealed by Integration with Gene Expression Data. Plos Computational Biology 2008, 4:11.
-
(2008)
Plos Computational Biology
, vol.4
, pp. 11
-
-
Hegde, S.R.1
Manimaran, P.2
Mande, S.C.3
-
33
-
-
0035648637
-
A faster algorithm for betweenness centrality
-
Brandes U. A faster algorithm for betweenness centrality. Journal of Mathematical Sociology 2001, 25(2):163-177.
-
(2001)
Journal of Mathematical Sociology
, vol.25
, Issue.2
, pp. 163-177
-
-
Brandes, U.1
-
34
-
-
13944252976
-
A measure of betweenness centrality based on random walks
-
Newman MEJ. A measure of betweenness centrality based on random walks. Social Networks 2005, 27:39-54.
-
(2005)
Social Networks
, vol.27
, pp. 39-54
-
-
Newman, M.E.J.1
-
35
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
10.1038/nrg1272, 14735121
-
Barabasi AL, Oltvai ZN. Network biology: Understanding the cell's functional organization. Nature Reviews Genetics 2004, 5:101-113. 10.1038/nrg1272, 14735121.
-
(2004)
Nature Reviews Genetics
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
36
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
10.1038/30918, 9623998
-
Watts DJ, Strogatz SH. Collective dynamics of 'small-world' networks. Nature 1998, 393:440-442. 10.1038/30918, 9623998.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
37
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
10.1016/j.cell.2005.08.029, 16169070
-
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksoz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE. A human protein-protein interaction network: A resource for annotating the proteome. Cell 2005, 122:957-968. 10.1016/j.cell.2005.08.029, 16169070.
-
(2005)
Cell
, vol.122
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksoz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
38
-
-
57649199632
-
The prediction of protein-protein interaction networks in rice blast fungus
-
10.1186/1471-2164-9-519, 2601049, 18976500
-
He F, Zhang Y, Chen H, Zhang ZD, Peng YL. The prediction of protein-protein interaction networks in rice blast fungus. Bmc Genomics 2008, 9:519. 10.1186/1471-2164-9-519, 2601049, 18976500.
-
(2008)
Bmc Genomics
, vol.9
, pp. 519
-
-
He, F.1
Zhang, Y.2
Chen, H.3
Zhang, Z.D.4
Peng, Y.L.5
-
39
-
-
33947252154
-
Network-based prediction of protein function
-
1847944, 17353930
-
Sharan R, Ulitsky I, Shamir R. Network-based prediction of protein function. Molecular Systems Biology 2007, 3:88. 1847944, 17353930.
-
(2007)
Molecular Systems Biology
, vol.3
, pp. 88
-
-
Sharan, R.1
Ulitsky, I.2
Shamir, R.3
-
40
-
-
84875795505
-
Uniprot: the Universal Protein Resource
-
Uniprot: the Universal Protein Resource. , http://www.uniprot.org/uniprot
-
-
-
-
41
-
-
33644876020
-
Pfam: clans, web tools and services
-
10.1093/nar/gkj149, 1347511, 16381856
-
Finn RD, Mistry J, Schuster-Bockler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer ELL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Research 2006, 34:D247-D251. 10.1093/nar/gkj149, 1347511, 16381856.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.L.12
Bateman, A.13
-
42
-
-
13844264506
-
IPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
-
10.1093/bioinformatics/bti011, 15353450
-
Finn RD, Marshall M, Bateman A. iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions. Bioinformatics 2005, 21:410-412. 10.1093/bioinformatics/bti011, 15353450.
-
(2005)
Bioinformatics
, vol.21
, pp. 410-412
-
-
Finn, R.D.1
Marshall, M.2
Bateman, A.3
-
43
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
10.1101/gr.1239303, 403769, 14597658
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Research 2003, 13:2498-2504. 10.1101/gr.1239303, 403769, 14597658.
-
(2003)
Genome Research
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
44
-
-
0347473809
-
Gaining confidence in high-throughput protein interaction networks
-
10.1038/nbt924, 14704708
-
Bader JS, Chaudhuri A, Rothberg JM, Chant J. Gaining confidence in high-throughput protein interaction networks. Nature Biotechnology 2004, 22:78-85. 10.1038/nbt924, 14704708.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 78-85
-
-
Bader, J.S.1
Chaudhuri, A.2
Rothberg, J.M.3
Chant, J.4
-
45
-
-
0036279153
-
Protein interaction verification and functional annotation by integrated analysis of genome-scale data
-
10.1016/S1097-2765(02)00531-2, 12049748
-
Kemmeren P, van Berkum NL, Vilo J, Bijma T, Donders R, Brazma A, Holstege FCP. Protein interaction verification and functional annotation by integrated analysis of genome-scale data. Molecular Cell 2002, 9:1133-1143. 10.1016/S1097-2765(02)00531-2, 12049748.
-
(2002)
Molecular Cell
, vol.9
, pp. 1133-1143
-
-
Kemmeren, P.1
van Berkum, N.L.2
Vilo, J.3
Bijma, T.4
Donders, R.5
Brazma, A.6
Holstege, F.C.P.7
-
46
-
-
0037432528
-
How reliable are experimental protein-protein interaction data?
-
10.1016/S0022-2836(03)00239-0, 12662919
-
Sprinzak E, Sattath S, Margalit H. How reliable are experimental protein-protein interaction data?. Journal of Molecular Biology 2003, 327:919-923. 10.1016/S0022-2836(03)00239-0, 12662919.
-
(2003)
Journal of Molecular Biology
, vol.327
, pp. 919-923
-
-
Sprinzak, E.1
Sattath, S.2
Margalit, H.3
-
47
-
-
0035212065
-
Is there a bias in proteome research?
-
10.1101/gr.206701, 11731485
-
Mrowka R, Patzak A, Herzel H. Is there a bias in proteome research?. Genome Research 2001, 11:1971-1973. 10.1101/gr.206701, 11731485.
-
(2001)
Genome Research
, vol.11
, pp. 1971-1973
-
-
Mrowka, R.1
Patzak, A.2
Herzel, H.3
-
48
-
-
84862830633
-
A web-based tool for Gene Ontology searching
-
QuickGO
-
QuickGO a web-based tool for Gene Ontology searching. QuickGO., http://www.ebi.ac.uk/QuickGO/
-
-
-
-
49
-
-
34547763236
-
A transversal approach to predict gene product networks from ontology-based similarity
-
10.1186/1471-2105-8-235, 1940024, 17605807
-
Chabalier J, Mosser J, Burgun A. A transversal approach to predict gene product networks from ontology-based similarity. BMC Bioinformatics 2007, 8:235. 10.1186/1471-2105-8-235, 1940024, 17605807.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 235
-
-
Chabalier, J.1
Mosser, J.2
Burgun, A.3
|