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Volumn 80, Issue 3, 2012, Pages 523-533

Diversity of flavin-binding monooxygenase genes (almA) in marine bacteria capable of degradation long-chain alkanes

Author keywords

Biodegradation; Biodiversity; Flavin binding monooxygenase (AlmA); Gene diversity; Long chain alkanes; Marine bacteria

Indexed keywords

ALKANE; BACTERIAL DNA; MIXED FUNCTION OXIDASE; PRIMER DNA; RIBOFLAVIN DERIVATIVE; SEA WATER;

EID: 84862813650     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2012.01322.x     Document Type: Article
Times cited : (77)

References (48)
  • 1
    • 0021915294 scopus 로고
    • The degradation of 1-phenylalkanes by an oil-degrading strain of Acinetobacter lwoffii
    • Amund O & Higgins I (1985) The degradation of 1-phenylalkanes by an oil-degrading strain of Acinetobacter lwoffii. Antonie Van Leeuwenhoek 51: 45-56.
    • (1985) Antonie Van Leeuwenhoek , vol.51 , pp. 45-56
    • Amund, O.1    Higgins, I.2
  • 2
    • 2942632957 scopus 로고    scopus 로고
    • Bioremediation of coastal areas 5 years after the Nakhodka oil spill in the Sea of Japan: isolation and characterization of hydrocarbon-degrading bacteria
    • Chaerun SK, Tazaki K, Asada R et al. (2004) Bioremediation of coastal areas 5 years after the Nakhodka oil spill in the Sea of Japan: isolation and characterization of hydrocarbon-degrading bacteria. Environ Int 30: 911-922.
    • (2004) Environ Int , vol.30 , pp. 911-922
    • Chaerun, S.K.1    Tazaki, K.2    Asada, R.3
  • 3
    • 0034947785 scopus 로고    scopus 로고
    • Influence of n-alkanes and petroleum on fatty acid composition of a hydrocarbonoclastic bacterium: Marinobacter hydrocarbonoclasticus strain 617
    • Doumenq P, Aries E, Asia L et al. (2001) Influence of n-alkanes and petroleum on fatty acid composition of a hydrocarbonoclastic bacterium: Marinobacter hydrocarbonoclasticus strain 617. Chemosphere 44: 519-528.
    • (2001) Chemosphere , vol.44 , pp. 519-528
    • Doumenq, P.1    Aries, E.2    Asia, L.3
  • 5
    • 34248385250 scopus 로고    scopus 로고
    • Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
    • Feng L, Wang W, Cheng J et al. (2007) Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. P Natl Acad Sci USA 104: 5602-5607.
    • (2007) P Natl Acad Sci USA , vol.104 , pp. 5602-5607
    • Feng, L.1    Wang, W.2    Cheng, J.3
  • 6
    • 33645994824 scopus 로고    scopus 로고
    • Marine microorganisms make a meal of oil
    • Head IM & Jones DM (2006) Marine microorganisms make a meal of oil. Nat Rev Microbiol 4: 173-182.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 173-182
    • Head, I.M.1    Jones, D.M.2
  • 7
    • 0035208305 scopus 로고    scopus 로고
    • Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident
    • Kasai Y, Kishira H, Syutsubo K & Harayama S (2001) Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident. Environ Microbiol 3: 246-255.
    • (2001) Environ Microbiol , vol.3 , pp. 246-255
    • Kasai, Y.1    Kishira, H.2    Syutsubo, K.3    Harayama, S.4
  • 8
    • 0036001072 scopus 로고    scopus 로고
    • Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water
    • Kasai Y, Kishira H, Sasaki T, Syutsubo K, Watanabe K & Harayama S (2002) Predominant growth of Alcanivorax strains in oil-contaminated and nutrient-supplemented sea water. Environ Microbiol 4: 141-147.
    • (2002) Environ Microbiol , vol.4 , pp. 141-147
    • Kasai, Y.1    Kishira, H.2    Sasaki, T.3    Syutsubo, K.4    Watanabe, K.5    Harayama, S.6
  • 9
    • 0035116872 scopus 로고    scopus 로고
    • Isolation and characterization of long-chain-alkane degrading Bacillus thermoleovorans from deep subterranean petroleum reservoirs
    • Kato T, Haruki M, Imanaka T, Morikawa M et al. (2001) Isolation and characterization of long-chain-alkane degrading Bacillus thermoleovorans from deep subterranean petroleum reservoirs. J Biosci Bioeng 91: 64-70.
    • (2001) J Biosci Bioeng , vol.91 , pp. 64-70
    • Kato, T.1    Haruki, M.2    Imanaka, T.3    Morikawa, M.4
  • 10
    • 84984135407 scopus 로고
    • Enzymologie der n-Alkanoxidation bei Acinetobacter
    • Kleber H, Claus R & Asperger O (1983) Enzymologie der n-Alkanoxidation bei Acinetobacter. Acta Biotechnol 3: 251-260.
    • (1983) Acta Biotechnol , vol.3 , pp. 251-260
    • Kleber, H.1    Claus, R.2    Asperger, O.3
  • 11
    • 0035117021 scopus 로고    scopus 로고
    • Biodegradation of long-chain n-paraffins from waste oil of car engine by Acinetobacter sp
    • Koma D, Hasumi F, Yamamoto E, Ohta T, Chung S & Kubo M (2001) Biodegradation of long-chain n-paraffins from waste oil of car engine by Acinetobacter sp. J Biosci Bioeng 91: 94-96.
    • (2001) J Biosci Bioeng , vol.91 , pp. 94-96
    • Koma, D.1    Hasumi, F.2    Yamamoto, E.3    Ohta, T.4    Chung, S.5    Kubo, M.6
  • 12
  • 13
    • 10644221875 scopus 로고    scopus 로고
    • Isolation and characterization of Rhodococcus sp. strains TMP2 and T12 that degrade 2,6,10,14-tetramethylpentadecane (pristane) at moderately low temperatures
    • Kunihiro N, Haruki M, Takano K, Morikawa M & Kanaya S (2005) Isolation and characterization of Rhodococcus sp. strains TMP2 and T12 that degrade 2, 6, 10, 14-tetramethylpentadecane (pristane) at moderately low temperatures. J Biotechnol 115: 129-136.
    • (2005) J Biotechnol , vol.115 , pp. 129-136
    • Kunihiro, N.1    Haruki, M.2    Takano, K.3    Morikawa, M.4    Kanaya, S.5
  • 14
    • 0029910007 scopus 로고    scopus 로고
    • Degradation of crude oil by Acinetobacter calcoaceticus and Alcaligenes odorans
    • Lal B & Khanna S (1996) Degradation of crude oil by Acinetobacter calcoaceticus and Alcaligenes odorans. J Appl Bacteriol 81: 355-362.
    • (1996) J Appl Bacteriol , vol.81 , pp. 355-362
    • Lal, B.1    Khanna, S.2
  • 15
    • 19644397623 scopus 로고    scopus 로고
    • Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment
    • Liu C & Shao Z (2005) Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55: 1181-1186.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1181-1186
    • Liu, C.1    Shao, Z.2
  • 16
    • 79955013063 scopus 로고    scopus 로고
    • Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5
    • Liu C, Wang W, Wu Y, Zhou Z, Lai Q & Shao Z (2011) Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5. Environ Microbiol 13: 1168-1178.
    • (2011) Environ Microbiol , vol.13 , pp. 1168-1178
    • Liu, C.1    Wang, W.2    Wu, Y.3    Zhou, Z.4    Lai, Q.5    Shao, Z.6
  • 17
    • 0038534422 scopus 로고    scopus 로고
    • Isolation and characterization of a novel oxygenase that catalyzes the first step of nalkane oxidation in Acinetobacter sp. strain M-1
    • Maeng JH, Sakai Y & Tani Y (1996) Isolation and characterization of a novel oxygenase that catalyzes the first step of nalkane oxidation in Acinetobacter sp. strain M-1. J Bacteriol 178: 3695-3700.
    • (1996) J Bacteriol , vol.178 , pp. 3695-3700
    • Maeng, J.H.1    Sakai, Y.2    Tani, Y.3
  • 18
    • 0016436552 scopus 로고
    • Comparative analysis of the lipids of Acinetobacter species grown on hexadecane
    • Makula RA, Lockwood PJ & Finnerty WR (1975) Comparative analysis of the lipids of Acinetobacter species grown on hexadecane. J Bacteriol 121: 250-258.
    • (1975) J Bacteriol , vol.121 , pp. 250-258
    • Makula, R.A.1    Lockwood, P.J.2    Finnerty, W.R.3
  • 19
    • 84862831444 scopus 로고    scopus 로고
    • Pollution in the ocean
    • National Research Council (NRC). NRC, The National Academy of Sciences, Washington, DC.
    • National Research Council (NRC) (2003) Pollution in the ocean. Highlights of National Academies Reports. NRC, The National Academy of Sciences, Washington, DC.
    • (2003) Highlights of National Academies Reports
  • 20
    • 82355173519 scopus 로고    scopus 로고
    • Are alkane hydroxylase genes (alkB) relevant to assess petroleum bioremediation processes in chronically polluted coastal sediments?
    • Paisse S, Duran R & Coulon F (2011) Are alkane hydroxylase genes (alkB) relevant to assess petroleum bioremediation processes in chronically polluted coastal sediments? Appl Microbiol Biotechol 92: 835-844.
    • (2011) Appl Microbiol Biotechol , vol.92 , pp. 835-844
    • Paisse, S.1    Duran, R.2    Coulon, F.3
  • 21
    • 34250644064 scopus 로고    scopus 로고
    • An oil-degrading bacterium: Rhodococcus erythropolis strain 3C-9 and its biosurfactants
    • Peng F & Liu Z (2007) An oil-degrading bacterium: Rhodococcus erythropolis strain 3C-9 and its biosurfactants. J Appl Microbiol 102: 1603-1611.
    • (2007) J Appl Microbiol , vol.102 , pp. 1603-1611
    • Peng, F.1    Liu, Z.2
  • 22
    • 0029971654 scopus 로고    scopus 로고
    • Uptake and utilization of n-octacosane and n-nonacosane by Arthrobacter nicotianae KCC B35
    • Radwan SS, Sorkhoh NA & Felzmann H (1996) Uptake and utilization of n-octacosane and n-nonacosane by Arthrobacter nicotianae KCC B35. J Appl Bacteriol 80: 370-374.
    • (1996) J Appl Bacteriol , vol.80 , pp. 370-374
    • Radwan, S.S.1    Sorkhoh, N.A.2    Felzmann, H.3
  • 23
    • 0015400912 scopus 로고
    • Microbial degradation of crude oil: factors affecting the dispersion in sea water by mixed and pure cultures
    • Reisfeld A, Rosenberg E & Gutnick D (1972) Microbial degradation of crude oil: factors affecting the dispersion in sea water by mixed and pure cultures. Appl Microbiol Biotechnol 24: 363-368.
    • (1972) Appl Microbiol Biotechnol , vol.24 , pp. 363-368
    • Reisfeld, A.1    Rosenberg, E.2    Gutnick, D.3
  • 24
    • 33744762185 scopus 로고    scopus 로고
    • Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization
    • Sabirova J, Ferrer M, Regenhardt D, Timmis KN & Golyshin P (2006) Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization. J Bacteriol 188: 3763-3773.
    • (2006) J Bacteriol , vol.188 , pp. 3763-3773
    • Sabirova, J.1    Ferrer, M.2    Regenhardt, D.3    Timmis, K.N.4    Golyshin, P.5
  • 25
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N & Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Bio Evol 4: 406-425.
    • (1987) Mol Bio Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 26
    • 0001417645 scopus 로고
    • Use of long-chain nalkanes (C13-C44) by an isolate, Acinetobacter sp. M-1
    • Sakai Y, Maeng J, Tani Y & Kato N (1994) Use of long-chain nalkanes (C13-C44) by an isolate, Acinetobacter sp. M-1. Biosci Biotechnol Biochem 58: 2128-2130.
    • (1994) Biosci Biotechnol Biochem , vol.58 , pp. 2128-2130
    • Sakai, Y.1    Maeng, J.2    Tani, Y.3    Kato, N.4
  • 27
    • 33747043510 scopus 로고    scopus 로고
    • Genome sequence of the ubiquitous hydrocarbondegrading marine bacterium Alcanivorax borkumensis
    • Schneiker S, Martins dos Santos VA, Bartels D et al. (2006) Genome sequence of the ubiquitous hydrocarbondegrading marine bacterium Alcanivorax borkumensis. Nat Biotechnol 24: 997-1004.
    • (2006) Nat Biotechnol , vol.24 , pp. 997-1004
    • Schneiker, S.1    Martins dos Santos, V.A.2    Bartels, D.3
  • 28
    • 0025197514 scopus 로고
    • Crude oil and hydrocarbon-degrading strains of Rhodococcus rhodochrous isolated from soil and marine environments in Kuwai
    • Sorkhoh N, Ghannoum M, Ibrahim A, Stretton R & Radwan S (1990) Crude oil and hydrocarbon-degrading strains of Rhodococcus rhodochrous isolated from soil and marine environments in Kuwai. Environ Pollut 65: 1-17.
    • (1990) Environ Pollut , vol.65 , pp. 1-17
    • Sorkhoh, N.1    Ghannoum, M.2    Ibrahim, A.3    Stretton, R.4    Radwan, S.5
  • 29
    • 0035210375 scopus 로고    scopus 로고
    • Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains
    • Syutsubo K, Kishira H & Harayama S (2001) Development of specific oligonucleotide probes for the identification and in situ detection of hydrocarbon-degrading Alcanivorax strains. Environ Microbiol 3: 371-379.
    • (2001) Environ Microbiol , vol.3 , pp. 371-379
    • Syutsubo, K.1    Kishira, H.2    Harayama, S.3
  • 30
    • 0035111115 scopus 로고    scopus 로고
    • Gene structures and regulation of the alkane hydroxylase complex in Acinetobacter sp. strain M-1
    • Tani A, Ishige T & Sakai Y (2001) Gene structures and regulation of the alkane hydroxylase complex in Acinetobacter sp. strain M-1. J Bacteriol 183: 1819-1823.
    • (2001) J Bacteriol , vol.183 , pp. 1819-1823
    • Tani, A.1    Ishige, T.2    Sakai, Y.3
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibsion TJ & Plewniak F (1997) The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-48882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-48882
    • Thompson, J.D.1    Gibsion, T.J.2    Plewniak, F.3
  • 32
    • 33747720825 scopus 로고    scopus 로고
    • Utilization of n-alkanes by a newly isolated strain of Acinetobacter venetianus: the role of two AlkB-type alkane hydroxylases
    • Throne-Holst M, Markussen S, Winnberg A, Ellingsen TE, Kotlar HK & Zotchev SB (2006) Utilization of n-alkanes by a newly isolated strain of Acinetobacter venetianus: the role of two AlkB-type alkane hydroxylases. Appl Microbiol Biotechnol 72: 353-360.
    • (2006) Appl Microbiol Biotechnol , vol.72 , pp. 353-360
    • Throne-Holst, M.1    Markussen, S.2    Winnberg, A.3    Ellingsen, T.E.4    Kotlar, H.K.5    Zotchev, S.B.6
  • 33
    • 34249658423 scopus 로고    scopus 로고
    • Identification of novel genes involved in long-chain nalkane degradation by Acinetobacter sp. strain DSM 17874
    • Throne-Holst M, Wentzel A, Ellingsen T, Kotlar H & Zotchev S (2007) Identification of novel genes involved in long-chain nalkane degradation by Acinetobacter sp. strain DSM 17874. Appl Environ Microbiol 73: 3327-3332.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 3327-3332
    • Throne-Holst, M.1    Wentzel, A.2    Ellingsen, T.3    Kotlar, H.4    Zotchev, S.5
  • 34
    • 33846621913 scopus 로고    scopus 로고
    • Alkane hydroxylases involved in microbial alkane degradation
    • van Beilen JB & Funhoff EG (2007) Alkane hydroxylases involved in microbial alkane degradation. Appl Microbiol Biotechnol 74: 13-21.
    • (2007) Appl Microbiol Biotechnol , vol.74 , pp. 13-21
    • van Beilen, J.B.1    Funhoff, E.G.2
  • 35
    • 18744416524 scopus 로고    scopus 로고
    • Alkane hydrox-ylase homologues in gram-positive strains
    • van Beilen JB, Smits TH, Whyte LG et al. (2002) Alkane hydrox-ylase homologues in gram-positive strains. Environ Microbiol 4: 676-682.
    • (2002) Environ Microbiol , vol.4 , pp. 676-682
    • van Beilen, J.B.1    Smits, T.H.2    Whyte, L.G.3
  • 37
    • 33144459955 scopus 로고    scopus 로고
    • Naturally transformable Acinetobacter sp. strain ADP1 belongs to the newly described species Acinetobacter baylyi
    • Vaneechoutte M, Young DM, Ornston LN et al. (2006) Naturally transformable Acinetobacter sp. strain ADP1 belongs to the newly described species Acinetobacter baylyi. Appl Environ Microbiol 72: 932-936.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 932-936
    • Vaneechoutte, M.1    Young, D.M.2    Ornston, L.N.3
  • 38
    • 61449093226 scopus 로고    scopus 로고
    • A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1
    • Wang B & Lai Q (2008) A pyrene-degrading consortium from deep-sea sediment of the West Pacific and its key member Cycloclasticus sp. P1. Environ Microbiol 10 (8): 1948-1963.
    • (2008) Environ Microbiol , vol.10 , Issue.8 , pp. 1948-1963
    • Wang, B.1    Lai, Q.2
  • 39
    • 78049369893 scopus 로고    scopus 로고
    • Identification of AlmA genes involved in long-chain alkane degradation by Alcanivorax hongdengensis A-11-3
    • Wang W & Shao Z (2010) Identification of AlmA genes involved in long-chain alkane degradation by Alcanivorax hongdengensis A-11-3. Wei Sheng Wu Xue Bao 50: 1051-1057.
    • (2010) Wei Sheng Wu Xue Bao , vol.50 , pp. 1051-1057
    • Wang, W.1    Shao, Z.2
  • 40
    • 77953557020 scopus 로고    scopus 로고
    • Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated fromthe Atlantic Ocean
    • Wang L, Wang W & Shao Z (2010) Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated fromthe Atlantic Ocean. Environ Microbiol 12: 1230-1242.
    • (2010) Environ Microbiol , vol.12 , pp. 1230-1242
    • Wang, L.1    Wang, W.2    Shao, Z.3
  • 41
    • 77956883738 scopus 로고    scopus 로고
    • Diversity and abundance of oil-degrading bacteria and alkane hydroxylase (alkB) genes in the subtropical seawater of Xiamen Island
    • Wanpeng W, Wang L & Shao Z (2010) Diversity and abundance of oil-degrading bacteria and alkane hydroxylase (alkB) genes in the subtropical seawater of Xiamen Island. Microb Ecol, 60: 429-439.
    • (2010) Microb Ecol , vol.60 , pp. 429-439
    • Wanpeng, W.1    Wang, L.2    Shao, Z.3
  • 42
    • 0023041821 scopus 로고
    • Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint
    • Weienga RK, Terpstra P & Hol WG (1986) Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint. J Mol Biol 187: 101-107.
    • (1986) J Mol Biol , vol.187 , pp. 101-107
    • Weienga, R.K.1    Terpstra, P.2    Hol, W.G.3
  • 44
    • 0035370088 scopus 로고    scopus 로고
    • Anaerobic biodegradation of saturated and aromatic hydrocarbons
    • Widdel F & Rabus R (2001) Anaerobic biodegradation of saturated and aromatic hydrocarbons. Curr Opin Biotechnol 12: 259-276.
    • (2001) Curr Opin Biotechnol , vol.12 , pp. 259-276
    • Widdel, F.1    Rabus, R.2
  • 45
    • 67651089925 scopus 로고    scopus 로고
    • Alcanivorax hongdengensis sp. nov., a alkane-degrading bacterium isolated from surface seawater of the straits of Malacca and Singapore, producing a lipopeptide as its biosurfactant
    • Wu Y, Lai Q, Zhou Z, Qiao N, Liu C & Shao Z (2008) Alcanivorax hongdengensis sp. nov., a alkane-degrading bacterium isolated from surface seawater of the straits of Malacca and Singapore, producing a lipopeptide as its biosurfactant. Int J Syst Evol Microbiol 59: 1474-1479.
    • (2008) Int J Syst Evol Microbiol , vol.59 , pp. 1474-1479
    • Wu, Y.1    Lai, Q.2    Zhou, Z.3    Qiao, N.4    Liu, C.5    Shao, Z.6
  • 46
    • 0442326354 scopus 로고    scopus 로고
    • Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons
    • Yakimov MM, Giuliano L & Denaro R (2004) Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons. Int J Syst Evol Microbiol 54: 141-148.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 141-148
    • Yakimov, M.M.1    Giuliano, L.2    Denaro, R.3
  • 48
    • 0034036445 scopus 로고    scopus 로고
    • Characterization of bacterial strains able to grow on high molecular mass residues from crude oil processing
    • Yuste L, Corbella ME, Turiegano MJ, Karlson U, Puyet A & Rojo F (2000) Characterization of bacterial strains able to grow on high molecular mass residues from crude oil processing. FEMS Microbiol Ecol 32: 69-75.
    • (2000) FEMS Microbiol Ecol , vol.32 , pp. 69-75
    • Yuste, L.1    Corbella, M.E.2    Turiegano, M.J.3    Karlson, U.4    Puyet, A.5    Rojo, F.6


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