-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0026594191
-
Molecular approaches for environmental monitoring of microorganisms
-
Atlas, R.M., Sayler, G., Burlage, R.S., and Bej, A.K. (1992) Molecular approaches for environmental monitoring of microorganisms. Biotechniques 12: 706.
-
(1992)
Biotechniques
, vol.12
, pp. 706
-
-
Atlas, R.M.1
Sayler, G.2
Burlage, R.S.3
Bej, A.K.4
-
4
-
-
33846621913
-
Alkane hydroxylases involved in microbial alkane degradation
-
van Beilen, J.B., and Funhoff, E.G. (2007) Alkane hydroxylases involved in microbial alkane degradation. Appl Microbiol Biotechnol 74: 13-21.
-
(2007)
Appl Microbiol Biotechnol
, vol.74
, pp. 13-21
-
-
van Beilen, J.B.1
Funhoff, E.G.2
-
5
-
-
0026564093
-
DNA sequence determination and functional characterization of the OCT-plasmid-encoded alkJKL genes of Pseudomonas oleovorans
-
van Beilen, J.B., Eggink, G., Enequist, H., Bos, R., and Witholt, B. (1992) DNA sequence determination and functional characterization of the OCT-plasmid-encoded alkJKL genes of Pseudomonas oleovorans. Mol Microbiol 6: 3121-3136.
-
(1992)
Mol Microbiol
, vol.6
, pp. 3121-3136
-
-
van Beilen, J.B.1
Eggink, G.2
Enequist, H.3
Bos, R.4
Witholt, B.5
-
6
-
-
0028672044
-
Genetics of alkane oxidation by Pseudomonas oleovorans
-
van Beilen, J.B., Wubbolts, M.G., and Witholt, B. (1994) Genetics of alkane oxidation by Pseudomonas oleovorans. Biodegradation 5: 161-174.
-
(1994)
Biodegradation
, vol.5
, pp. 161-174
-
-
van Beilen, J.B.1
Wubbolts, M.G.2
Witholt, B.3
-
7
-
-
1342289955
-
Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis
-
van Beilen, J.B., Marin, M.M., Smits, T.H., Rothlisberger, M., Franchini, A.G., Witholt, B., and Rojo, F. (2004) Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis. Environ Microbiol 6: 264-273.
-
(2004)
Environ Microbiol
, vol.6
, pp. 264-273
-
-
van Beilen, J.B.1
Marin, M.M.2
Smits, T.H.3
Rothlisberger, M.4
Franchini, A.G.5
Witholt, B.6
Rojo, F.7
-
8
-
-
33644853465
-
Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases
-
van Beilen, J.B., Funhoff, E.G., van Loon, A., Just, A., Kaysser, L., Bouza, M., etal. (2006) Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases. Appl Environ Microbiol 72: 59-65.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 59-65
-
-
van Beilen, J.B.1
Funhoff, E.G.2
van Loon, A.3
Just, A.4
Kaysser, L.5
Bouza, M.6
-
9
-
-
0038579429
-
The MerR family of transcriptional regulators
-
Brown, N.L., Stoyanov, J.V., Kidd, S.P., and Hobman, J.L. (2003) The MerR family of transcriptional regulators. FEMS Microbiol Rev 27: 145-163.
-
(2003)
FEMS Microbiol Rev
, vol.27
, pp. 145-163
-
-
Brown, N.L.1
Stoyanov, J.V.2
Kidd, S.P.3
Hobman, J.L.4
-
10
-
-
1842349188
-
Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti
-
Ditta, G., Stanfield, S., Corbin, D., and Helinski, D.R. (1980) Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc Natl Acad Sci USA 77: 7347-7351.
-
(1980)
Proc Natl Acad Sci USA
, vol.77
, pp. 7347-7351
-
-
Ditta, G.1
Stanfield, S.2
Corbin, D.3
Helinski, D.R.4
-
11
-
-
0023948010
-
High efficiency transformation of E. coli by high voltage electroporation
-
Dower, W.J., Miller, J.F., and Ragsdale, C.W. (1988) High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16: 6127-6145.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 6127-6145
-
-
Dower, W.J.1
Miller, J.F.2
Ragsdale, C.W.3
-
12
-
-
0030957823
-
Molecular basis for membrane phospholipid diversity: why are there so many lipids?
-
Dowhan, W. (1997) Molecular basis for membrane phospholipid diversity: why are there so many lipids? Annu Rev Biochem 66: 199-232.
-
(1997)
Annu Rev Biochem
, vol.66
, pp. 199-232
-
-
Dowhan, W.1
-
13
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
14
-
-
0030034795
-
A Hidden Markov Model approach to variation among sites in rate of evolution
-
Felsenstein, J., and Churchill, G.A. (1996) A Hidden Markov Model approach to variation among sites in rate of evolution. Mol Biol Evol 13: 93-104.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 93-104
-
-
Felsenstein, J.1
Churchill, G.A.2
-
15
-
-
34248385250
-
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
-
Feng, L., Wang, W., Cheng, J., Ren, Y., Zhao, G., Gao, C., etal. (2007) Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci USA 104: 5602-5607.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 5602-5607
-
-
Feng, L.1
Wang, W.2
Cheng, J.3
Ren, Y.4
Zhao, G.5
Gao, C.6
-
16
-
-
84959747425
-
Toward defining the course of evolution: minimum change for a specified tree topology
-
Fitch, W.M. (1971) Toward defining the course of evolution: minimum change for a specified tree topology. Syst Zool 20: 406-416.
-
(1971)
Syst Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
17
-
-
0031452318
-
Arac/XylS family of transcriptional regulators
-
Gallegos, M.T., Schleif, R., Bairoch, A., Hofmann, K., and Ramos, J.L. (1997) Arac/XylS family of transcriptional regulators. Microbiol Mol Biol Rev 61: 393-410.
-
(1997)
Microbiol Mol Biol Rev
, vol.61
, pp. 393-410
-
-
Gallegos, M.T.1
Schleif, R.2
Bairoch, A.3
Hofmann, K.4
Ramos, J.L.5
-
18
-
-
0000925040
-
Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene
-
Grunstein, M., and Hogness, D.S. (1975) Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc Natl Acad Sci USA 72: 3961-3965.
-
(1975)
Proc Natl Acad Sci USA
, vol.72
, pp. 3961-3965
-
-
Grunstein, M.1
Hogness, D.S.2
-
19
-
-
0041851188
-
Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation
-
Hara, A., Syutsubo, K., and Harayama, S. (2003) Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation. Environ Microbiol 5: 746-753.
-
(2003)
Environ Microbiol
, vol.5
, pp. 746-753
-
-
Hara, A.1
Syutsubo, K.2
Harayama, S.3
-
20
-
-
1342268703
-
Cloning and functional analysis of alkB genes in Alcanivorax borkumensis SK2
-
Hara, A., Baik, S.H., Syutsubo, K., Misawa, N., Smits, T.H., van Beilen, J.B., and Harayama, S. (2004) Cloning and functional analysis of alkB genes in Alcanivorax borkumensis SK2. Environ Microbiol 6: 191-197.
-
(2004)
Environ Microbiol
, vol.6
, pp. 191-197
-
-
Hara, A.1
Baik, S.H.2
Syutsubo, K.3
Misawa, N.4
Smits, T.H.5
van Beilen, J.B.6
Harayama, S.7
-
21
-
-
0023784236
-
Modulation of dolichyl-phosphomannose synthase activity by changes inthe lipid environment of the enzyme
-
Jensen, J.W., and Schutzbach, J.S. (1988) Modulation of dolichyl-phosphomannose synthase activity by changes inthe lipid environment of the enzyme. Biochemistry 27: 6315-6320.
-
(1988)
Biochemistry
, vol.27
, pp. 6315-6320
-
-
Jensen, J.W.1
Schutzbach, J.S.2
-
22
-
-
0032739085
-
A thermal and chemical degradation approach to decipher pristane and phytane precursors in sedimentary organic matter
-
Koopmans, M.P., Rijpstra, W.I.C., Klapwijk, M.M., de Leeuw, J.W., Lewan, M.D., and Damste, J.S.S. (1999) A thermal and chemical degradation approach to decipher pristane and phytane precursors in sedimentary organic matter. Org Geochem 30: 1089-1104.
-
(1999)
Org Geochem
, vol.30
, pp. 1089-1104
-
-
Koopmans, M.P.1
Rijpstra, W.I.C.2
Klapwijk, M.M.3
de Leeuw, J.W.4
Lewan, M.D.5
Damste, J.S.S.6
-
23
-
-
29344473552
-
Isolation and functional analysis of cytochrome P450 CYP153A genes from various environments
-
Kubota, M., Nodate, M., Yasumoto-Hirose, M., Uchiyama, T., Kagami, O., Shizuri, Y., and Misawa, N. (2005) Isolation and functional analysis of cytochrome P450 CYP153A genes from various environments. Biosci Biotechnol Biochem 69: 2421-2430.
-
(2005)
Biosci Biotechnol Biochem
, vol.69
, pp. 2421-2430
-
-
Kubota, M.1
Nodate, M.2
Yasumoto-Hirose, M.3
Uchiyama, T.4
Kagami, O.5
Shizuri, Y.6
Misawa, N.7
-
24
-
-
19644397623
-
Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment
-
Liu, C., and Shao, Z. (2005) Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55: 1181-1186.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 1181-1186
-
-
Liu, C.1
Shao, Z.2
-
25
-
-
0000258931
-
Transduction of lactose-utilizing ability among strains of E. coli and S. dysenteriae and the properties of the transducing phage particles
-
Luria, S.E., Adams, J.N., and Ting, R.C. (1960) Transduction of lactose-utilizing ability among strains of E. coli and S. dysenteriae and the properties of the transducing phage particles. Virology 12: 348-390.
-
(1960)
Virology
, vol.12
, pp. 348-390
-
-
Luria, S.E.1
Adams, J.N.2
Ting, R.C.3
-
26
-
-
0021321562
-
Effect of lipid composition on the calcium/adenosine 5'-triphosphate coupling ratio of the Ca2+-ATPase of sarcoplasmic reticulum
-
Navarro, J., Toivio-Kinnucan, M., and Racker, E. (1984) Effect of lipid composition on the calcium/adenosine 5'-triphosphate coupling ratio of the Ca2+-ATPase of sarcoplasmic reticulum. Biochemistry 23: 130-135.
-
(1984)
Biochemistry
, vol.23
, pp. 130-135
-
-
Navarro, J.1
Toivio-Kinnucan, M.2
Racker, E.3
-
27
-
-
0033635022
-
Artemis: sequence visualization and annotation
-
Rutherford, K., Parkhill, J., Crook, J., Horsnell, T., Rice, P., Rajandream, M.A., and Barrell, B. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945.
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
28
-
-
33744762185
-
Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization
-
Sabirova, J.S., Ferrer, M., Regenhardt, D., Timmis, K.N., and Golyshin, P.N. (2006) Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization. J Bacteriol 188: 3763-3773.
-
(2006)
J Bacteriol
, vol.188
, pp. 3763-3773
-
-
Sabirova, J.S.1
Ferrer, M.2
Regenhardt, D.3
Timmis, K.N.4
Golyshin, P.N.5
-
29
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
30
-
-
0004136246
-
-
Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning A Laboratory Manual. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press.
-
(1989)
Molecular Cloning A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
31
-
-
33747043510
-
Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
-
Schneiker, S., Martins dos Santos, V.A., Bartels, D., Bekel, T., Brecht, M., Buhrmester, J., etal. (2006) Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nat Biotechnol 24: 997-1004.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 997-1004
-
-
Schneiker, S.1
Martins dos Santos, V.A.2
Bartels, D.3
Bekel, T.4
Brecht, M.5
Buhrmester, J.6
-
32
-
-
0034847356
-
New alkane-responsive expression vectors for Escherichia coli and pseudomonas
-
Smits, T.H., Seeger, M.A., Witholt, B., and van Beilen, J.B. (2001) New alkane-responsive expression vectors for Escherichia coli and pseudomonas. Plasmid 46: 16-24.
-
(2001)
Plasmid
, vol.46
, pp. 16-24
-
-
Smits, T.H.1
Seeger, M.A.2
Witholt, B.3
van Beilen, J.B.4
-
33
-
-
0036188547
-
Functional analysis of alkane hydroxylases from gram-negative and gram-positive bacteria
-
Smits, T.H., Balada, S.B., Witholt, B., and van Beilen, J.B. (2002) Functional analysis of alkane hydroxylases from gram-negative and gram-positive bacteria. J Bacteriol 184: 1733-1742.
-
(2002)
J Bacteriol
, vol.184
, pp. 1733-1742
-
-
Smits, T.H.1
Balada, S.B.2
Witholt, B.3
van Beilen, J.B.4
-
34
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
35
-
-
34249658423
-
Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874
-
Throne-Holst, M., Wentzel, A., Ellingsen, T.E., Kotlar, H.K., and Zotchev, S.B. (2007) Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874. Appl Environ Microbiol 73: 3327-3332.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3327-3332
-
-
Throne-Holst, M.1
Wentzel, A.2
Ellingsen, T.E.3
Kotlar, H.K.4
Zotchev, S.B.5
-
36
-
-
0031778521
-
Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium
-
Yakimov, M.M., Golyshin, P.N., Lang, S., Moore, E.R., Abraham, W.R., Lunsdorf, H., and Timmis, K.N. (1998) Alcanivorax borkumensis gen. nov., sp. nov., a new, hydrocarbon-degrading and surfactant-producing marine bacterium. Int J Syst Bacteriol 48 (Part 2): 339-348.
-
(1998)
Int J Syst Bacteriol
, vol.48
, Issue.2 PART
, pp. 339-348
-
-
Yakimov, M.M.1
Golyshin, P.N.2
Lang, S.3
Moore, E.R.4
Abraham, W.R.5
Lunsdorf, H.6
Timmis, K.N.7
-
37
-
-
34249936102
-
Obligate oil-degrading marine bacteria
-
Yakimov, M.M., Timmis, K.N., and Golyshin, P.N. (2007) Obligate oil-degrading marine bacteria. Curr Opin Biotechnol 18: 257-266.
-
(2007)
Curr Opin Biotechnol
, vol.18
, pp. 257-266
-
-
Yakimov, M.M.1
Timmis, K.N.2
Golyshin, P.N.3
|