-
1
-
-
34248385250
-
Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir
-
Feng L, Wang W, Cheng J, Ren Y, Zhao G, Gao C, Tang Y, Liu X, Han W, Peng X, Liu R, Wang L (2007) Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci USA 104: 5602-5607.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 5602-5607
-
-
Feng, L.1
Wang, W.2
Cheng, J.3
Ren, Y.4
Zhao, G.5
Gao, C.6
Tang, Y.7
Liu, X.8
Han, W.9
Peng, X.10
Liu, R.11
Wang, L.12
-
2
-
-
0345550240
-
Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems
-
Golyshin PN, Martins Dos Santos VA, Kaiser O, Ferrer M, Sabirova YS, Lunsdorf H, Chernikova TN, Golyshina OV, Yakimov MM, Puhler A, Timmis KN (2003) Genome sequence completed of Alcanivorax borkumensis, a hydrocarbon-degrading bacterium that plays a global role in oil removal from marine systems. J Biotechnol 106: 215-220.
-
(2003)
J Biotechnol
, vol.106
, pp. 215-220
-
-
Golyshin, P.N.1
Martins Dos Santos, V.A.2
Kaiser, O.3
Ferrer, M.4
Sabirova, Y.S.5
Lunsdorf, H.6
Chernikova, T.N.7
Golyshina, O.V.8
Yakimov, M.M.9
Puhler, A.10
Timmis, K.N.11
-
4
-
-
28444466634
-
Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR
-
Heiss-Blanquet S, Benoit Y, Marechaux C, Monot F (2005) Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR. J Appl Microbiol 99: 1392-1403.
-
(2005)
J Appl Microbiol
, vol.99
, pp. 1392-1403
-
-
Heiss-Blanquet, S.1
Benoit, Y.2
Marechaux, C.3
Monot, F.4
-
5
-
-
77956884996
-
Pollution status and sustainable management of Xiamen Bay in China: a brief review
-
Islam KS, Rahman MM, Eda LEH (2009) Pollution status and sustainable management of Xiamen Bay in China: a brief review. Int J Ocean Syst Manage 1: 155-168.
-
(2009)
Int J Ocean Syst Manage
, vol.1
, pp. 155-168
-
-
Islam, K.S.1
Rahman, M.M.2
Eda, L.E.H.3
-
7
-
-
33745942487
-
A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization
-
Kloos K, Munch JC, Schloter M (2006) A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. J Microbiol Methods 66: 486-496.
-
(2006)
J Microbiol Methods
, vol.66
, pp. 486-496
-
-
Kloos, K.1
Munch, J.C.2
Schloter, M.3
-
8
-
-
19644397623
-
Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment
-
Liu C, Shao Z (2005) Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55: 1181-1186.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 1181-1186
-
-
Liu, C.1
Shao, Z.2
-
9
-
-
3442891491
-
A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil
-
Luz AP, Pellizari VH, Whyte LG, Greer CW (2004) A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. Can J Microbiol 50: 323-333.
-
(2004)
Can J Microbiol
, vol.50
, pp. 323-333
-
-
Luz, A.P.1
Pellizari, V.H.2
Whyte, L.G.3
Greer, C.W.4
-
10
-
-
0034801865
-
Molecular characterization of the 56-kDa CYP153 from Acinetobacter sp. EB104
-
Maier T, Forster HH, Asperger O, Hahn U (2001) Molecular characterization of the 56-kDa CYP153 from Acinetobacter sp. EB104. Biochem Biophys Res Commun 286: 652-658.
-
(2001)
Biochem Biophys Res Commun
, vol.286
, pp. 652-658
-
-
Maier, T.1
Forster, H.H.2
Asperger, O.3
Hahn, U.4
-
11
-
-
0034966733
-
The alkane hydroxylase gene of Burkholderia cepacia RR10 is under catabolite repression control
-
Marin MM, Smits TH, van Beilen JB, Rojo F (2001) The alkane hydroxylase gene of Burkholderia cepacia RR10 is under catabolite repression control. J Bacteriol 183: 4202-4209.
-
(2001)
J Bacteriol
, vol.183
, pp. 4202-4209
-
-
Marin, M.M.1
Smits, T.H.2
van Beilen, J.B.3
Rojo, F.4
-
12
-
-
2142736141
-
Petroleum hydrocarbons and polycyclic aromatic hydrocarbons in the surficial sediments of Xiamen Harbour and Yuan Dan Lake, China
-
Ou S, Zheng J, Richardson BJ, Lam PK (2004) Petroleum hydrocarbons and polycyclic aromatic hydrocarbons in the surficial sediments of Xiamen Harbour and Yuan Dan Lake, China. Chemosphere 56: 107-112.
-
(2004)
Chemosphere
, vol.56
, pp. 107-112
-
-
Ou, S.1
Zheng, J.2
Richardson, B.J.3
Lam, P.K.4
-
13
-
-
33845440338
-
Using real-time PCR to assess changes in the hydrocarbon-degrading microbial community in Antarctic soil during bioremediation
-
Powell SM, Ferguson SH, Bowman JP, Snape I (2006) Using real-time PCR to assess changes in the hydrocarbon-degrading microbial community in Antarctic soil during bioremediation. Microb Ecol 52: 523-532.
-
(2006)
Microb Ecol
, vol.52
, pp. 523-532
-
-
Powell, S.M.1
Ferguson, S.H.2
Bowman, J.P.3
Snape, I.4
-
14
-
-
37249055491
-
Isolation of Gram-positive n-alkane degraders from a hydrocarbon-contaminated Mediterranean shoreline
-
Quatrini P, Scaglione G, De Pasquale C, Riela S, Puglia AM (2008) Isolation of Gram-positive n-alkane degraders from a hydrocarbon-contaminated Mediterranean shoreline. J Appl Microbiol 104: 251-259.
-
(2008)
J Appl Microbiol
, vol.104
, pp. 251-259
-
-
Quatrini, P.1
Scaglione, G.2
de Pasquale, C.3
Riela, S.4
Puglia, A.M.5
-
15
-
-
70349655393
-
Degradation of alkanes by bacteria
-
Rojo F (2009) Degradation of alkanes by bacteria. Environ Microbiol 11: 2477-2490.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2477-2490
-
-
Rojo, F.1
-
16
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
17
-
-
0038347357
-
Monitoring of alkane-degrading bacteria in a sea-water microcosm during crude oil degradation by polymerase chain reaction based on alkane-catabolic genes
-
Sei K, Sugimoto Y, Mori K, Maki H, Kohno T (2003) Monitoring of alkane-degrading bacteria in a sea-water microcosm during crude oil degradation by polymerase chain reaction based on alkane-catabolic genes. Environ Microbiol 5: 517-522.
-
(2003)
Environ Microbiol
, vol.5
, pp. 517-522
-
-
Sei, K.1
Sugimoto, Y.2
Mori, K.3
Maki, H.4
Kohno, T.5
-
18
-
-
0028089687
-
Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase
-
Shanklin J, Whittle E, Fox BG (1994) Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase. Biochem 33: 12787-12794.
-
(1994)
Biochem
, vol.33
, pp. 12787-12794
-
-
Shanklin, J.1
Whittle, E.2
Fox, B.G.3
-
19
-
-
18044401488
-
Selection of specific endophytic bacterial genotypes by plants in response to soil contamination
-
Siciliano SD, Fortin N, Mihoc A, Wisse G, Labelle S, Beaumier D, Ouellette D, Roy R, Whyte LG, Banks MK, Schwab P, Lee K, Greer CW (2001) Selection of specific endophytic bacterial genotypes by plants in response to soil contamination. Appl Environ Microbiol 67: 2469-2475.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2469-2475
-
-
Siciliano, S.D.1
Fortin, N.2
Mihoc, A.3
Wisse, G.4
Labelle, S.5
Beaumier, D.6
Ouellette, D.7
Roy, R.8
Whyte, L.G.9
Banks, M.K.10
Schwab, P.11
Lee, K.12
Greer, C.W.13
-
20
-
-
0032412432
-
Assessment of the microbiological potential for the natural attenuation of petroleum hydrocarbons in a shallow aquifer system
-
Stapleton RD, Ayler GS (1998) Assessment of the microbiological potential for the natural attenuation of petroleum hydrocarbons in a shallow aquifer system. Microbial Ecol: 36: 49-361.
-
(1998)
Microbial Ecol:
, vol.36
, pp. 49-361
-
-
Stapleton, R.D.1
Ayler, G.S.2
-
21
-
-
0033171433
-
Molecular screening for alkane hydroxylase genes in gram-negative and gram-positive strains
-
Smits TH, Röthlisberger M, Witholt B, van Beilen JB (1999) Molecular screening for alkane hydroxylase genes in gram-negative and gram-positive strains. Environ Microbiol 1: 307-317.
-
(1999)
Environ Microbiol
, vol.1
, pp. 307-317
-
-
Smits, T.H.1
Röthlisberger, M.2
Witholt, B.3
van Beilen, J.B.4
-
22
-
-
0035111115
-
Gene structures and regulation of the alkane hydroxylase complex in Acinetobacter sp. strain M-1
-
Tani A, Ishige T, Sakai Y, Kato N (2001) Gene structures and regulation of the alkane hydroxylase complex in Acinetobacter sp. strain M-1. J Bacteriol 183: 1819-1823.
-
(2001)
J Bacteriol
, vol.183
, pp. 1819-1823
-
-
Tani, A.1
Ishige, T.2
Sakai, Y.3
Kato, N.4
-
23
-
-
34249658423
-
Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874
-
Throne-Holst M, Wentzel A, Ellingsen TE, Kotlar HK, Zotchev SB (2007) Identification of novel genes involved in long-chain n-alkane degradation by Acinetobacter sp. strain DSM 17874. Appl Environ Microbiol 73: 3327-3332.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3327-3332
-
-
Throne-Holst, M.1
Wentzel, A.2
Ellingsen, T.E.3
Kotlar, H.K.4
Zotchev, S.B.5
-
25
-
-
18744416524
-
Alkane hydroxylases in gram-positive strains
-
van Beilen JB, Smits THM, Whyte LG, Schorcht S, Röthlisberger M, Plaggemeier T, Engesser KH, Witholt B (2002) Alkane hydroxylases in gram-positive strains. Environ Microbiol 4: 676-682.
-
(2002)
Environ Microbiol
, vol.4
, pp. 676-682
-
-
van Beilen, J.B.1
Smits, T.H.M.2
Whyte, L.G.3
Schorcht, S.4
Röthlisberger, M.5
Plaggemeier, T.6
Engesser, K.H.7
Witholt, B.8
-
27
-
-
0041916075
-
Diversity of alkane hydroxylase systems in the environment
-
van Beilen JB, Li Z, Duetz WA, Smits THM, Witholt B (2003) Diversity of alkane hydroxylase systems in the environment. Oil Gas Sci Technol 58: 427-440.
-
(2003)
Oil Gas Sci Technol
, vol.58
, pp. 427-440
-
-
van Beilen, J.B.1
Li, Z.2
Duetz, W.A.3
Smits, T.H.M.4
Witholt, B.5
-
28
-
-
20444375861
-
Expanding the alkane oxygenase toolbox: new enzymes and applications
-
van Beilen JB, Funhoff EG (2005) Expanding the alkane oxygenase toolbox: new enzymes and applications. Curr Opin Biotechnol 16: 308-314.
-
(2005)
Curr Opin Biotechnol
, vol.16
, pp. 308-314
-
-
van Beilen, J.B.1
Funhoff, E.G.2
-
29
-
-
33846621913
-
Alkane hydroxylases involved in microbial alkane degradation
-
van Beilen JB, Funhoff EG (2007) Alkane hydroxylases involved in microbial alkane degradation. Appl Microbiol Biotechnol 74: 13-21.
-
(2007)
Appl Microbiol Biotechnol
, vol.74
, pp. 13-21
-
-
van Beilen, J.B.1
Funhoff, E.G.2
-
30
-
-
0033850347
-
Distribution of alkB genes within n alkane-degrading bacteria
-
Vomberg A, Klinner U (2000) Distribution of alkB genes within n alkane-degrading bacteria. J Appl Microbiol 89: 339-348.
-
(2000)
J Appl Microbiol
, vol.89
, pp. 339-348
-
-
Vomberg, A.1
Klinner, U.2
-
31
-
-
77953557020
-
Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean
-
Wang L, Wang W, Lai Q, Shao Z (2010) Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean. Environ Microbiol 12(5): 1230-1242.
-
(2010)
Environ Microbiol
, vol.12
, Issue.5
, pp. 1230-1242
-
-
Wang, L.1
Wang, W.2
Lai, Q.3
Shao, Z.4
-
32
-
-
72949106034
-
Novel alkane hydroxylase gene (alkB) diversity in sediments associated with hydrocarbon seeps in the Timor Sea, Australia
-
Wasmund K, Burns KA, Kurtboke DI, Bourne DG (2009) Novel alkane hydroxylase gene (alkB) diversity in sediments associated with hydrocarbon seeps in the Timor Sea, Australia. Appl Environ Microbiol 75: 7391-7398.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7391-7398
-
-
Wasmund, K.1
Burns, K.A.2
Kurtboke, D.I.3
Bourne, D.G.4
-
33
-
-
77956879933
-
-
WEF AA (1998) Standard Methods for the Examination of Water and Wastewater (20th ed.), APHA-AWWA-WEF, Washington, DC.
-
-
-
-
34
-
-
34748892898
-
Bacterial metabolism of long-chain n-alkanes
-
Wentzel A, Ellingsen TE, Kotlar HK, Zotchev SB, Throne-Holst M (2007) Bacterial metabolism of long-chain n-alkanes. Appl Microbiol Biotechnol 76: 1209-1221.
-
(2007)
Appl Microbiol Biotechnol
, vol.76
, pp. 1209-1221
-
-
Wentzel, A.1
Ellingsen, T.E.2
Kotlar, H.K.3
Zotchev, S.B.4
Throne-Holst, M.5
-
35
-
-
0036342960
-
Prevalence of alkane monooxygenase genes in arctic and antarctic hydrocarbon-contaminated and pristine soils
-
Whyte LG, Schultz A, van Beilen JB, Luz AP, Pellizari D, Labbé D, Greer CW (2002) Prevalence of alkane monooxygenase genes in arctic and antarctic hydrocarbon-contaminated and pristine soils. FEMS Microbiol Ecol 41: 141-150.
-
(2002)
FEMS Microbiol Ecol
, vol.41
, pp. 141-150
-
-
Whyte, L.G.1
Schultz, A.2
van Beilen, J.B.3
Luz, A.P.4
Pellizari, D.5
Labbé, D.6
Greer, C.W.7
-
36
-
-
0242669334
-
Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531
-
Whyte LG, Smits TH, Labbe D, Witholt B, Greer CW, van Beilen JB (2002) Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. Appl Environ Microbiol 68: 5933-5942.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5933-5942
-
-
Whyte, L.G.1
Smits, T.H.2
Labbe, D.3
Witholt, B.4
Greer, C.W.5
van Beilen, J.B.6
|