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Volumn 499, Issue 1, 2012, Pages 37-40

High GC content of simple sequence repeats in Herpes simplex virus type 1 genome

Author keywords

Herpes simplex virus type1; Microsatellite; Simple sequence repeat

Indexed keywords

NUCLEOTIDE DERIVATIVE; VIRUS DNA;

EID: 84862808171     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.02.049     Document Type: Article
Times cited : (18)

References (40)
  • 1
    • 17344371397 scopus 로고    scopus 로고
    • Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy
    • Brais B., et al. Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy. Nat. Genet. 1998, 18:164-167.
    • (1998) Nat. Genet. , vol.18 , pp. 164-167
    • Brais, B.1
  • 2
    • 69249238007 scopus 로고    scopus 로고
    • Similar distribution of simple sequence repeats in diverse completed Human immunodeficiency Virus Type1 genomes
    • Chen M., et al. Similar distribution of simple sequence repeats in diverse completed Human immunodeficiency Virus Type1 genomes. FEBS Lett. 2009, 2959-2963.
    • (2009) FEBS Lett. , pp. 2959-2963
    • Chen, M.1
  • 4
    • 0032539711 scopus 로고    scopus 로고
    • Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces
    • Field D., Wills C. Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc. Natl. Acad. Sci. U.S.A. 1998, 95:1647-1652.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 1647-1652
    • Field, D.1    Wills, C.2
  • 5
    • 33745281268 scopus 로고    scopus 로고
    • Low-level expression and reversion both contribute to reactivation of Herpes Simplex Virus drug-resistant mutants with mutations on homopolymeric sequences in thymidine kinase
    • Griffiths A., Link M.A., Furness C.L., Coen D.M. Low-level expression and reversion both contribute to reactivation of Herpes Simplex Virus drug-resistant mutants with mutations on homopolymeric sequences in thymidine kinase. J. Virol. 2006, 80:6568-6574.
    • (2006) J. Virol. , vol.80 , pp. 6568-6574
    • Griffiths, A.1    Link, M.A.2    Furness, C.L.3    Coen, D.M.4
  • 6
    • 0035077459 scopus 로고    scopus 로고
    • Expression of Chlamydia pneumoniae polymorphic membrane protein family genes
    • Grimwood J., Olinger L., Stephens R.S. Expression of Chlamydia pneumoniae polymorphic membrane protein family genes. Infect. Immun. 2001, 69:2383-2389.
    • (2001) Infect. Immun. , vol.69 , pp. 2383-2389
    • Grimwood, J.1    Olinger, L.2    Stephens, R.S.3
  • 7
    • 0033972529 scopus 로고    scopus 로고
    • Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism
    • Gur-Arie R., et al. Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism. Genome Res. 2000, 10:62-71.
    • (2000) Genome Res. , vol.10 , pp. 62-71
    • Gur-Arie, R.1
  • 9
    • 10044228269 scopus 로고    scopus 로고
    • Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores
    • Hiratani I., Leskovar A., Gilbert D.M. Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores. Proc. Natl. Acad. Sci. U.S.A. 2004, 101:16861-16866.
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 16861-16866
    • Hiratani, I.1    Leskovar, A.2    Gilbert, D.M.3
  • 10
    • 34547526440 scopus 로고    scopus 로고
    • Genomic distribution of simple sequence repeats in Brassica rapa
    • Hong C.P., et al. Genomic distribution of simple sequence repeats in Brassica rapa. Mol. Cells 2007, 23:349-356.
    • (2007) Mol. Cells , vol.23 , pp. 349-356
    • Hong, C.P.1
  • 11
    • 0028952245 scopus 로고
    • Simple repetitive DNA sequences from primates: compilation and analysis
    • Jurka J., Pethiyagoda C. Simple repetitive DNA sequences from primates: compilation and analysis. J. Mol. Evol. 1995, 40:120-126.
    • (1995) J. Mol. Evol. , vol.40 , pp. 120-126
    • Jurka, J.1    Pethiyagoda, C.2
  • 12
    • 14544279926 scopus 로고    scopus 로고
    • Survey of simple sequence repeats in completed fungal genomes
    • Karaoglu H., Lee C.M., Meyer W. Survey of simple sequence repeats in completed fungal genomes. Mol. Biol. Evol. 2005, 22:639-649.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 639-649
    • Karaoglu, H.1    Lee, C.M.2    Meyer, W.3
  • 13
    • 28444457335 scopus 로고    scopus 로고
    • Replication characteristics of herpes simplex virus type 1 (HSV-1) recombinants in 3 types of tissue cultures
    • Karimi A., MacLean A. Replication characteristics of herpes simplex virus type 1 (HSV-1) recombinants in 3 types of tissue cultures. Iran. Biomed. J. 2005, 9:95-101.
    • (2005) Iran. Biomed. J. , vol.9 , pp. 95-101
    • Karimi, A.1    MacLean, A.2
  • 14
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi Y., King D.G. Simple sequence repeats as advantageous mutators in evolution. Trends Genet. 2006, 22(5):253-259.
    • (2006) Trends Genet. , vol.22 , Issue.5 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 15
    • 0002488711 scopus 로고    scopus 로고
    • Functional roles of microsatellites and minisatellites
    • Oxford University Press, Oxford, U.K, D.D. Goldstein, C. Schlotterer (Eds.)
    • Kashi Y., Soller M. Functional roles of microsatellites and minisatellites. Microsatellite Evolution and Application 1999, 10-23. Oxford University Press, Oxford, U.K. D.D. Goldstein, C. Schlotterer (Eds.).
    • (1999) Microsatellite Evolution and Application , pp. 10-23
    • Kashi, Y.1    Soller, M.2
  • 16
    • 0031081111 scopus 로고    scopus 로고
    • Simple sequence repeats as a source of quantitative genetic variation
    • Kashi Y., King D., Soller M. Simple sequence repeats as a source of quantitative genetic variation. Trends Genet. 1997, 13:74-78.
    • (1997) Trends Genet. , vol.13 , pp. 74-78
    • Kashi, Y.1    King, D.2    Soller, M.3
  • 17
    • 0034946803 scopus 로고    scopus 로고
    • Differential distribution of simple sequence repeats in eukaryotic genomes
    • Katti M.V., Ranjekar P.K., Guota V.S. Differential distribution of simple sequence repeats in eukaryotic genomes. Mol. Biol. Evol. 2001, 18:1161-1167.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1161-1167
    • Katti, M.V.1    Ranjekar, P.K.2    Guota, V.S.3
  • 18
    • 68749084512 scopus 로고    scopus 로고
    • Mutational pressure is a cause of inter- and intragenomic differences in GC-content of simplex and varicello viruses
    • Khrustalev V.V., et al. Mutational pressure is a cause of inter- and intragenomic differences in GC-content of simplex and varicello viruses. Comput. Biol. Chem. 2009, 33:295-302.
    • (2009) Comput. Biol. Chem. , vol.33 , pp. 295-302
    • Khrustalev, V.V.1
  • 19
    • 39849087537 scopus 로고    scopus 로고
    • Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
    • Kim T.S., et al. Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference. BMC Genomics 2008, 9:31.
    • (2008) BMC Genomics , vol.9 , pp. 31
    • Kim, T.S.1
  • 20
    • 0029282062 scopus 로고
    • Physiological and evolutionary aspects of short unstable DNA repeats in the human genome
    • Kunzler P., Matsuo K., Schaffner W. Physiological and evolutionary aspects of short unstable DNA repeats in the human genome. Biol. Chem. 1995, 376:201-211.
    • (1995) Biol. Chem. , vol.376 , pp. 201-211
    • Kunzler, P.1    Matsuo, K.2    Schaffner, W.3
  • 21
    • 33745033519 scopus 로고    scopus 로고
    • Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes
    • Lawson M.J., Zhang L.Q. Distinct patterns of SSR distribution in the Arabidopsis thaliana and rice genomes. Genome Biol. 2006, 7:R14.
    • (2006) Genome Biol. , vol.7
    • Lawson, M.J.1    Zhang, L.Q.2
  • 22
    • 2442701496 scopus 로고    scopus 로고
    • Microsatellites within genes: structure, function, and evolution
    • Li Y.C., Korol A.B., Fahima T., Nevo E. Microsatellites within genes: structure, function, and evolution. Mol. Biol. Evol. 2004, 21:991-1007.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 991-1007
    • Li, Y.C.1    Korol, A.B.2    Fahima, T.3    Nevo, E.4
  • 23
    • 0032615249 scopus 로고    scopus 로고
    • DNA microsatellites: agents of evolution?
    • Moxon E.R., Wills C. DNA microsatellites: agents of evolution?. Sci. Am. 1999, 280:94-99.
    • (1999) Sci. Am. , vol.280 , pp. 94-99
    • Moxon, E.R.1    Wills, C.2
  • 24
    • 0034481291 scopus 로고    scopus 로고
    • Premature ovarian failure and the FMR1 gene
    • Murray A. Premature ovarian failure and the FMR1 gene. Semin. Reprod. Med. 2000, 18:59-66.
    • (2000) Semin. Reprod. Med. , vol.18 , pp. 59-66
    • Murray, A.1
  • 25
    • 0032901773 scopus 로고    scopus 로고
    • A herpes simplex virus type 1 latency-associated transcript mutant with Increased virulence and reduced spontaneous reactivation
    • Perng G.C., et al. A herpes simplex virus type 1 latency-associated transcript mutant with Increased virulence and reduced spontaneous reactivation. J. Virol. 1999, 73:920-929.
    • (1999) J. Virol. , vol.73 , pp. 920-929
    • Perng, G.C.1
  • 26
    • 33746444258 scopus 로고    scopus 로고
    • Characterization of novel sugarcane expressed sequence tag microsatellites and their comparison with genomic SSRs
    • Pinto L.R., et al. Characterization of novel sugarcane expressed sequence tag microsatellites and their comparison with genomic SSRs. Plant Breed. 2006, 125:378-384.
    • (2006) Plant Breed. , vol.125 , pp. 378-384
    • Pinto, L.R.1
  • 27
    • 33845888782 scopus 로고    scopus 로고
    • Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intercoding regions
    • Rajendrakumar P., Biswal A.K., Balachandran S.M., Srinivasarao K., Sundaram R.M. Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intercoding regions. Bioinformatics 2007, 23:1-4.
    • (2007) Bioinformatics , vol.23 , pp. 1-4
    • Rajendrakumar, P.1    Biswal, A.K.2    Balachandran, S.M.3    Srinivasarao, K.4    Sundaram, R.M.5
  • 28
    • 34250221157 scopus 로고    scopus 로고
    • Developmental stage related patterns of codon usage and genomic GC content: searching for evolutionary fingerprint by models of stem cell differentiation
    • Ren L., et al. Developmental stage related patterns of codon usage and genomic GC content: searching for evolutionary fingerprint by models of stem cell differentiation. Genome Biol. 2007, 8:R35.
    • (2007) Genome Biol. , vol.8
    • Ren, L.1
  • 29
    • 0036567258 scopus 로고    scopus 로고
    • Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution
    • Rocha E.P.C., Blanchard N. Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution. Nucleic Acids Res. 2002, 30:2031-2042.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2031-2042
    • Rocha, E.P.C.1    Blanchard, N.2
  • 30
    • 0023502309 scopus 로고
    • Detection of latency-related viral RNAs in trigeminalganglia of rabbits latently infected with herpes simplex virus type 1
    • Rock D.L., et al. Detection of latency-related viral RNAs in trigeminalganglia of rabbits latently infected with herpes simplex virus type 1. J. Virol. 1987, 61:3820-3826.
    • (1987) J. Virol. , vol.61 , pp. 3820-3826
    • Rock, D.L.1
  • 31
    • 0027941501 scopus 로고
    • Adaptive mutation by deletions in small mononucleotide repeats
    • Rosenberg S.M., Longerich S., Gee P., Harris R.S. Adaptive mutation by deletions in small mononucleotide repeats. Science 1994, 265:405.
    • (1994) Science , vol.265 , pp. 405
    • Rosenberg, S.M.1    Longerich, S.2    Gee, P.3    Harris, R.S.4
  • 32
    • 0034522229 scopus 로고    scopus 로고
    • Premature ovarian failure in the fragile X syndrome
    • Sherman S.L. Premature ovarian failure in the fragile X syndrome. Am. J. Med. Genet. 2000, 97:189-194.
    • (2000) Am. J. Med. Genet. , vol.97 , pp. 189-194
    • Sherman, S.L.1
  • 34
    • 0031871011 scopus 로고    scopus 로고
    • Structure and function of repetitive sequence elements associated with a highly polymorphic domain of the Neisseria meningitides PilQ protein
    • Tonjum T., Caugant D.A., Dunham S.A., Koomy M. Structure and function of repetitive sequence elements associated with a highly polymorphic domain of the Neisseria meningitides PilQ protein. Mol. Microbiol. 1998, 29:111-124.
    • (1998) Mol. Microbiol. , vol.29 , pp. 111-124
    • Tonjum, T.1    Caugant, D.A.2    Dunham, S.A.3    Koomy, M.4
  • 35
    • 0033858199 scopus 로고    scopus 로고
    • Microsatellites in different eukaryotic genomes: survey and analysis
    • Toth G., Gaspari Z., Jurka J. Microsatellites in different eukaryotic genomes: survey and analysis. Genome Res. 2000, 10:967-981.
    • (2000) Genome Res. , vol.10 , pp. 967-981
    • Toth, G.1    Gaspari, Z.2    Jurka, J.3
  • 36
    • 0033152406 scopus 로고    scopus 로고
    • The role of short sequence repeats in epidemiologic typing
    • Van Belkum A. The role of short sequence repeats in epidemiologic typing. Curr. Opin. Microbiol. 1999, 2:306-311.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 306-311
    • Van Belkum, A.1
  • 37
    • 0035214484 scopus 로고    scopus 로고
    • Bendable genes of warm-blooded vertebrates
    • Vinogradov A.E. Bendable genes of warm-blooded vertebrates. Mol. Biol. Evol. 2001, 18:2195-2200.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 2195-2200
    • Vinogradov, A.E.1
  • 38
    • 0037388031 scopus 로고    scopus 로고
    • DNA helix: the importance of being GC-rich
    • Vinogradov A.E. DNA helix: the importance of being GC-rich. Nucleic Acids Res. 2003, 31:1838-1844.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1838-1844
    • Vinogradov, A.E.1
  • 39
    • 0030808252 scopus 로고    scopus 로고
    • Microsatelite instability in yeast; dependence on the length of the microsatlelite
    • Wierl M., Dominska M., Peters T.D. Microsatelite instability in yeast; dependence on the length of the microsatlelite. Genetics 1997, 146:769-779.
    • (1997) Genetics , vol.146 , pp. 769-779
    • Wierl, M.1    Dominska, M.2    Peters, T.D.3
  • 40
    • 33846611373 scopus 로고    scopus 로고
    • CGG-repeat expansion in the DIP2B gene is associated with the fragile site FRA12A on chromosome 12q13.1
    • Winnepenninckx B., et al. CGG-repeat expansion in the DIP2B gene is associated with the fragile site FRA12A on chromosome 12q13.1. Am. J. Hum. Genet. 2007, 80:221-231.
    • (2007) Am. J. Hum. Genet. , vol.80 , pp. 221-231
    • Winnepenninckx, B.1


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