Differential expression of microRNA patterns in planarian normal and regenerative tissues

Molecular Biology Reports

Volumn 39, Issue 3, 2012, Pages 2653-2658

  Tian, Qing Nan ^a   Bao, Zhen Xia ^a   Lu, Ping ^a   Qin, Yun Fei ^a   Chen, San Jun ^a   Liang, Feng ^a   Mai, Jia ^a   Zhao, Jin Mei ^a   Zhu, Zhao Yu ^a   Zhang, Yi Zhe ^a   Zhang, Shou Tao ^a  

^a ZHENGZHOU UNIVERSITY   (China)

Author keywords

Microarray; microRNA; Planarian; Regeneration

Indexed keywords

MICRORNA;

ARTICLE; CONTROLLED STUDY; CYTOLOGY; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE LOCATION; MICROARRAY ANALYSIS; NONHUMAN; QUANTITATIVE ANALYSIS; REGULATORY MECHANISM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; STEM CELL; TISSUE REGENERATION; TISSUE SECTION; TURBELLARIA;

ANIMALS; COMPUTATIONAL BIOLOGY; DNA PRIMERS; MICROARRAY ANALYSIS; MICRORNAS; PLANARIANS; PLURIPOTENT STEM CELLS; REAL-TIME POLYMERASE CHAIN REACTION; REGENERATION;

EUKARYOTA; PLANARIA; TURBELLARIA;

EID: 84862799564     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-011-1018-5     Document Type: Article

References (20)

1. Newmark PA, Sánchez Alvarado A (2002) Not your father's planarian: a classic model enters the era of functional genomics. Nat Rev Genet 3:210-219
2. Morgan TH (1900) Regeneration in planarians. Arch Entw Mech Org 10:58-119
3. Baguñà J (1981) Planarian neoblasts. Nature 290:14-15
4. Reddien PW, Sánchez Alvarado A (2004) Fundamentals of planarian regeneration. Annu Rev Cell Dev Biol 20:725-757
5. Robb SM, Ross E, Sanchez Alvarado A (2008) SmedGD: the Schmidtea mediterranea genome database. Nucleic Acids Res 36:D599-D606
6. Reddien PW, Bermange AL, Murfitt KJ, Jennings JR, Sánchez Alvarado A (2005) Identification of genes needed for regeneration, stem cell function, and tissue homeostasis by systematic gene perturbation in planaria. Dev Cell 8:635-649
7. Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Alvarado AS, Kim JK, Rajewsky N (2009) High-resolution profiling and discovery of planarian small RNAs. Proc Natl Acad Sci USA 106:11546-11551
8. Rana TM (2007) Illuminating the silence: understanding the structure and function of small RNAs. Nat Rev Mol Cell Biol 8:23-26. doi:10.1038/nrm2085
9. Filipowicz W, Bhattacharyya SN, Sonenberg N (2008) Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? Nat Rev Genet 9:102-114
10. Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, Rougvie AE, Horvitz HR, Ruvkun G (2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403:901-906
11. Houbaviy HB, Murray MF, Sharp PA (2003) Embryonic stem cell specific microRNAs. Dev Cell 5:351-358
12. Hatfield SD, Shcherbata HR, Fischer KA, Nakahara K, Carthew RW, Ruohola-Baker H (2005) Stem cell division is regulated by the microRNA pathway. Nature 435:974-978
13. Yin VP, Thomson JM, Thummel R, Hyde DR, Hammond SM, Poss KD (2008) Fgf-dependent depletion of microRNA-133 promotes appendage regeneration in zebrafish. Genes Dev 22:728-733
14. Palakodeti D, Smielewska M, Graveley BR (2006) MicroRNAs from the planarian Schmidtea mediterranea: a model system for stem cell biology. RNA 12:1640-1649
15. Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR (2009) Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea. RNA 15:1483-1491
16. Farrell RE (2005) RNA methodologies: a laboratory guide for isolation and characterization, 3rd edn. Pennsylvania State University Press, Pennsylvania
17. Roush S, Slack FJ (2008) The let-7 family of microRNAs. Trends Cell Biol 18:505-516
18. Kennell JA, Gerin I, MacDougald OA, Cadigan KM (2008) The microRNA miR-8 is a conserved negative regulator of Wnt signaling. Proc Natl Acad Sci USA 105:15417-15422
19. Clevers H (2006) Wnt/beta-catenin signaling in development and disease. Cell 127:469-480
20. Nusse R (2005) Wnt signaling in disease and in development. Cell Res 15:28-32