-
1
-
-
0027521381
-
The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences
-
Bjellqvist B., Hughes G.J., Pasquali C., Paquet N., Ravier F., Sanchez J.C., et al. The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis 1993, 14:1023-1031.
-
(1993)
Electrophoresis
, vol.14
, pp. 1023-1031
-
-
Bjellqvist, B.1
Hughes, G.J.2
Pasquali, C.3
Paquet, N.4
Ravier, F.5
Sanchez, J.C.6
-
2
-
-
47549117421
-
Calculation of the isoelectric point of tryptic peptides in the pH 3.5-4.5 range based on adjacent amino acid effects
-
Cargile B.J., Sevinsky J.R., Essader A.S., Eu J.P., Stephenson J.L. Calculation of the isoelectric point of tryptic peptides in the pH 3.5-4.5 range based on adjacent amino acid effects. Electrophoresis 2008, 29:2768-2778.
-
(2008)
Electrophoresis
, vol.29
, pp. 2768-2778
-
-
Cargile, B.J.1
Sevinsky, J.R.2
Essader, A.S.3
Eu, J.P.4
Stephenson, J.L.5
-
4
-
-
38549155006
-
AAindex: amino acid index database, progress report 2008
-
Kawashima S., Pokarowski P., Pokarowska M., Kolinski A., Katayama T., Kanehisa M. AAindex: amino acid index database, progress report 2008. Nucleic Acids Res 2008, 36:D202-D205.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kawashima, S.1
Pokarowski, P.2
Pokarowska, M.3
Kolinski, A.4
Katayama, T.5
Kanehisa, M.6
-
5
-
-
2342629293
-
Determination of the isoelectric point of proteins by capillary isoelectric focusing
-
Righetti P.G. Determination of the isoelectric point of proteins by capillary isoelectric focusing. J Chromatogr A 2004, 1037:491-499.
-
(2004)
J Chromatogr A
, vol.1037
, pp. 491-499
-
-
Righetti, P.G.1
-
6
-
-
57649220813
-
A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing
-
Gauci S., van Breukelen B., Lemeer S.M., Krijgsveld J., Heck A.J. A versatile peptide pI calculator for phosphorylated and N-terminal acetylated peptides experimentally tested using peptide isoelectric focusing. Proteomics 2008, 8:4898-4906.
-
(2008)
Proteomics
, vol.8
, pp. 4898-4906
-
-
Gauci, S.1
van Breukelen, B.2
Lemeer, S.M.3
Krijgsveld, J.4
Heck, A.J.5
-
7
-
-
29144480261
-
Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides
-
Heller M., Ye M., Michel P.E., Morier P., Stalder D., Junger M.A., et al. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides. J Proteome Res 2005, 4:2273-2282.
-
(2005)
J Proteome Res
, vol.4
, pp. 2273-2282
-
-
Heller, M.1
Ye, M.2
Michel, P.E.3
Morier, P.4
Stalder, D.5
Junger, M.A.6
-
8
-
-
80052022909
-
In silico analysis of accurate proteomics, complemented by selective isolation of peptides
-
Perez-Riverol Y., Sanchez A., Ramos Y., Schmidt A., Muller M., Betancourt L., et al. In silico analysis of accurate proteomics, complemented by selective isolation of peptides. J Proteomics 2011, 74:2071-2082.
-
(2011)
J Proteomics
, vol.74
, pp. 2071-2082
-
-
Perez-Riverol, Y.1
Sanchez, A.2
Ramos, Y.3
Schmidt, A.4
Muller, M.5
Betancourt, L.6
-
9
-
-
0043122944
-
ExPASy: the proteomics server for in-depth protein knowledge and analysis
-
Gasteiger E., Gattiker A., Hoogland C., Ivanyi I., Appel R.D., Bairoch A. ExPASy: the proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res 2003, 31:3784-3788.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
10
-
-
1542635893
-
Prediction of the isoelectric point of an amino acid based on GA-PLS and SVMs
-
Liu H.X., Zhang R.S., Yao X.J., Liu M.C., Hu Z.D., Fan B.T. Prediction of the isoelectric point of an amino acid based on GA-PLS and SVMs. J Chem Inf Comput Sci 2004, 44:161-167.
-
(2004)
J Chem Inf Comput Sci
, vol.44
, pp. 161-167
-
-
Liu, H.X.1
Zhang, R.S.2
Yao, X.J.3
Liu, M.C.4
Hu, Z.D.5
Fan, B.T.6
-
11
-
-
65549154236
-
Predicting liquid chromatographic retention times of peptides from the Drosophila melanogaster proteome by machine learning approaches
-
Tian F., Yang L., Lv F., Zhou P. Predicting liquid chromatographic retention times of peptides from the Drosophila melanogaster proteome by machine learning approaches. Anal Chim Acta 2009, 644:10-16.
-
(2009)
Anal Chim Acta
, vol.644
, pp. 10-16
-
-
Tian, F.1
Yang, L.2
Lv, F.3
Zhou, P.4
-
12
-
-
38149108345
-
Enhanced analytical power of SDS-PAGE using machine learning algorithms
-
Supek F., Peharec P., Krsnik-Rasol M., Smuc T. Enhanced analytical power of SDS-PAGE using machine learning algorithms. Proteomics 2008, 8:28-31.
-
(2008)
Proteomics
, vol.8
, pp. 28-31
-
-
Supek, F.1
Peharec, P.2
Krsnik-Rasol, M.3
Smuc, T.4
-
13
-
-
16344384583
-
Effect of training datasets on support vector machine prediction of protein-protein interactions
-
Lo S.L., Cai C.Z., Chen Y.Z., Chung M.C. Effect of training datasets on support vector machine prediction of protein-protein interactions. Proteomics 2005, 5:876-884.
-
(2005)
Proteomics
, vol.5
, pp. 876-884
-
-
Lo, S.L.1
Cai, C.Z.2
Chen, Y.Z.3
Chung, M.C.4
-
14
-
-
27144489164
-
A tutorial on support vector machines for pattern recognition
-
Burges C.J.C. A tutorial on support vector machines for pattern recognition. Data Min Knowl Discov 1998, 2:121-167.
-
(1998)
Data Min Knowl Discov
, vol.2
, pp. 121-167
-
-
Burges, C.J.C.1
-
15
-
-
3142702204
-
TANDEM: matching proteins with tandem mass spectra
-
Craig R., Beavis R.C. TANDEM: matching proteins with tandem mass spectra. Bioinformatics 2004, 20:1466-1467.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
16
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller A., Nesvizhskii A.I., Kolker E., Aebersold R. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 2002, 74:5383-5392.
-
(2002)
Anal Chem
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
17
-
-
56249113343
-
Building predictive models in R using the caret package
-
Kuhn M. Building predictive models in R using the caret package. J Stat Softw 2008, 28:1-26.
-
(2008)
J Stat Softw
, vol.28
, pp. 1-26
-
-
Kuhn, M.1
-
19
-
-
0014349825
-
The characterization of amino acid sequences in proteins by statistical methods
-
Zimmerman J.M., Eliezer N., Simha R. The characterization of amino acid sequences in proteins by statistical methods. J Theor Biol 1968, 21:170-201.
-
(1968)
J Theor Biol
, vol.21
, pp. 170-201
-
-
Zimmerman, J.M.1
Eliezer, N.2
Simha, R.3
-
20
-
-
38649136585
-
High-accuracy peptide mass fingerprinting using peak intensity data with machine learning
-
Yang D., Ramkissoon K., Hamlett E., Giddings M.C. High-accuracy peptide mass fingerprinting using peak intensity data with machine learning. J Proteome Res 2008, 7:62-69.
-
(2008)
J Proteome Res
, vol.7
, pp. 62-69
-
-
Yang, D.1
Ramkissoon, K.2
Hamlett, E.3
Giddings, M.C.4
-
21
-
-
57649238001
-
Peak intensity prediction in MALDI-TOF mass spectrometry: a machine learning study to support quantitative proteomics
-
Timm W., Scherbart A., Bocker S., Kohlbacher O., Nattkemper T.W. Peak intensity prediction in MALDI-TOF mass spectrometry: a machine learning study to support quantitative proteomics. BMC Bioinformatics 2008, 9:443.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 443
-
-
Timm, W.1
Scherbart, A.2
Bocker, S.3
Kohlbacher, O.4
Nattkemper, T.W.5
-
22
-
-
33748849648
-
Machine learning in bioinformatics
-
Larranaga P., Calvo B., Santana R., Bielza C., Galdiano J., Inza I., et al. Machine learning in bioinformatics. Brief Bioinform 2006, 7:86-112.
-
(2006)
Brief Bioinform
, vol.7
, pp. 86-112
-
-
Larranaga, P.1
Calvo, B.2
Santana, R.3
Bielza, C.4
Galdiano, J.5
Inza, I.6
-
23
-
-
42049118310
-
Machine learning methods for predictive proteomics
-
Barla A., Jurman G., Riccadonna S., Merler S., Chierici M., Furlanello C. Machine learning methods for predictive proteomics. Brief Bioinform 2008, 9:119-128.
-
(2008)
Brief Bioinform
, vol.9
, pp. 119-128
-
-
Barla, A.1
Jurman, G.2
Riccadonna, S.3
Merler, S.4
Chierici, M.5
Furlanello, C.6
-
24
-
-
33750631580
-
Efficient fractionation and improved protein identification by peptide OFFGEL electrophoresis
-
Horth P., Miller C.A., Preckel T., Wenz C. Efficient fractionation and improved protein identification by peptide OFFGEL electrophoresis. Mol Cell Proteomics 2006, 5:1968-1974.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 1968-1974
-
-
Horth, P.1
Miller, C.A.2
Preckel, T.3
Wenz, C.4
-
25
-
-
1642485152
-
Immobilized pH gradients as a first dimension in shotgun proteomics and analysis of the accuracy of pI predictability of peptides
-
Cargile B.J., Talley D.L., Stephenson J.L. Immobilized pH gradients as a first dimension in shotgun proteomics and analysis of the accuracy of pI predictability of peptides. Electrophoresis 2004, 25:936-945.
-
(2004)
Electrophoresis
, vol.25
, pp. 936-945
-
-
Cargile, B.J.1
Talley, D.L.2
Stephenson, J.L.3
-
26
-
-
0347758353
-
An alternative to tandem mass spectrometry: isoelectric point and accurate mass for the identification of peptides
-
Cargile B.J., Stephenson J.L. An alternative to tandem mass spectrometry: isoelectric point and accurate mass for the identification of peptides. Anal Chem 2004, 76:267-275.
-
(2004)
Anal Chem
, vol.76
, pp. 267-275
-
-
Cargile, B.J.1
Stephenson, J.L.2
|