An exo-β-(1→3)-d-galactanase from Streptomyces sp. provides insights into type II arabinogalactan structure

Carbohydrate Research

Volumn 352, Issue , 2012, Pages 70-81

  Ling, Naomi X Y ^a   Lee, Joanne ^a   Ellis, Miriam ^a   Liao, Ming Long ^a   Mau, Shaio Lim ^a   Guest, David ^b   Janssen, Peter H ^c   Kováč, Pavol ^d   Bacic, Antony ^a   Pettolino, Filomena A ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b UNIVERSITY OF SYDNEY   (Australia)

^c AGRESEARCH GRASSLANDS   (New Zealand)

^d NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

Author keywords

d Galactanases; Arabinogalactan protein; CAZy family GH 43; De arabinosylated gum arabic; Streptomyces sp.

Indexed keywords

AMINO ACID SEQUENCE; ARABINOGALACTAN; ARABINOGALACTAN-PROTEIN; CAZY FAMILY GH 43; CULTURE FILTRATE; E. COLI; GALACTANS; GLYCOSYL HYDROLASES; GUM ARABIC; ISOLATED ENZYMES; OLIGOSACCHARIDE PRODUCT; PEPTIDE SEQUENCES; PH OPTIMA; PHYLOGENETIC ANALYSIS; RECOMBINANT ENZYMES; SEQUENCE HOMOLOGY; STREPTOMYCES SP; TYPE II;

ADHESIVES; AMINO ACIDS; BACTERIA; CLONING; ESCHERICHIA COLI; GENES; HYDROLYSIS; PROTEINS; SUGARS;

ENZYMES;

ARABINOGALACTAN; BACTERIAL ENZYME; EXO BETA (1-3) DEXTRO GALACTANASE; GALACTAN; GLYCOSIDASE; OLIGOSACCHARIDE; POLYSACCHARIDE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CARBOHYDRATE ANALYSIS; ENZYME ACTIVITY; ENZYME KINETICS; ENZYME PURIFICATION; ESCHERICHIA COLI; GENE EXPRESSION; GENE SEQUENCE; HYDROLYSIS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; STREPTOMYCES; TEMPERATURE SENSITIVITY;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; ESCHERICHIA COLI; GALACTANS; GLYCOSIDE HYDROLASES; MOLECULAR SEQUENCE DATA; SOIL MICROBIOLOGY; STREPTOMYCES; SUBSTRATE SPECIFICITY;

ACACIA SENEGAL; STREPTOMYCES; STREPTOMYCES SP.;

EID: 84862785009     PISSN: 00086215     EISSN: 1873426X     Source Type: Journal    
DOI: 10.1016/j.carres.2012.02.033     Document Type: Article

References (69)

1. G.O. Aspinall Carbohydrate Polymers of Plant Cell Walls F. Loewus, Biogenesis of Plant Cell Wall Polysaccharides 1973 Academic Press New York 95 115
2. W. Qi, C. Fong, and D.T.A. Lamport Plant Physiol. 96 1991 848 855
3. L.J. Goodrum, A. Patel, J.F. Leykam, and M.J. Kieliszewski Phytochemistry 54 2000 99 106
4. A.E. Clarke, R.L. Anderson, and B.A. Stone Phytochemistry 18 1979 521 540
5. S.C. Churms, E.H. Merrifield, and A.M. Stephen Carbohydr. Res. 123 1983 267 279
6. G.B. Fincher, B.A. Stone, and A.E. Clarke Annu. Rev. Plant Physiol. 34 1983 47 70
7. E.A. Nothnagel Int. Rev. Cytol. 174 1997 195 291
8. W. Sun, J. Xu, J. Yang, M.J. Kieliszewski, and A.M. Showalter Plant Cell Physiol. 46 2005 975 998
9. M.E. Osman, A.R. Menzies, P.A. Williams, G.O. Phillips, and T.C. Baldwin Carbohydr. Res. 246 1993 303 318
10. M.E. Osman, A.R. Menzies, B.A. Martin, P.A. Williams, G.O. Phillips, and T.C. Baldwin Phytochemistry 38 1995 409 417
11. C.A. Tischer, P.A.J. Gorin, and M. Iacomini Carbohydr. Polym. 47 2002 151 158
12. C.A. Tischer, M. Iacomini, and P.A.J. Gorin Carbohydr. Res. 337 2002 1647 1655
13. G.R. Ponder, and G.N. Richards Carbohydr. Polym. 34 1997 251 261
14. J.-M. Brillouet, P. Williams, F. Will, G. Muller, and P. Pellerin Carbohydr. Polym. 29 1996 271 275
15. L. Saulnier, J.-M. Brillouet, M. Moutounet, C.H. du Penhoat, and V. Michon Carbohydr. Res. 224 1992 219 235
16. Y. Tsumuraya, Y. Hashimoto, and S. Yamamoto Carbohydr. Res. 161 1987 113 126
17. Y. Tsumuraya, K. Ogura, Y. Hashimoto, H. Mukoyama, and S. Yamamoto Plant Physiol. 86 1988 155 160
18. A. Bacic, S.C. Churms, A.M. Stephen, P.B. Cohen, and G.B. Fincher Carbohydr. Res. 162 1987 85 93
19. M.J. Kieliszewski, R. Dezacks, J.F. Leykam, and D.T.A. Lamport Plant Physiol. 98 1992 919 926
20. M.J. Kieliszewski Phytochemistry 57 2001 319 323
21. E. Shpak, J.F. Leykam, and M.J. Kieliszewski Proc. Natl. Acad. Sci. U.S.A. [PNAS] 96 1999 14736 14741
22. E. Shpak, E. Barbar, J.F. Leykam, and M.J. Kieliszewski J. Biol. Chem. 276 2001 11272 11278
23. J. Xu, L. Tan, D.T.A. Lamport, A.M. Showalter, and M.J. Kieliszewski Phytochemistry 69 2008 1631 1640
24. J.M. Estévez, M.J. Kieliszewski, N. Khitrov, and C. Somerville Plant Physiol. 142 2006 458 470
25. J. Svetek, M.P. Yadav, and E.A. Nothnagel J. Biol. Chem. 274 1999 14724 14733
26. K.L. Johnson, B.J. Jones, C.J. Schultz, and A. Bacic Non-Enzymic Cell Wall (Glycol) Proteins J.C.K. Rose, The Plant Cell Wall: Annual Plant Reviews Vol. 8 2003 Blackwell Publishing Australia 111 154
27. A.J. van Hengel, Ab. van Kammen, and S.C. de Vries Physiol. Plantarum 114 2002 637 644
28. J. Letarte, E. Simion, M. Miner, and K.J. Kasha Plant Cell Rep. 24 2006 691 698
29. T.L. Putoczki, F. Pettolino, M.D.W. Griffin, R. Möller, J.A. Gerrard, A. Bacic, and S.L. Jackson Planta 226 2007 1131 1142
30. K.J.D. Lee, Y. Sakata, S.-L. Mau, F. Pettolino, A. Bacic, R.S. Quatrano, C.D. Knight, and J.P. Knox Plant Cell 17 2005 3109 3112
31. J.-M. Brillouet, P. Williams, and M. Moutounet Agric. Biol. Chem. 55 1991 1565 1571
32. J.M. Menestrina, M. Iacomini, C. Jones, and P.A.J. Gorin Phytochemistry 47 1998 715 721
33. P. Pellerin, and J.-M. Brillouet Carbohydr. Res. 264 1994 281 291
34. Y. Hirano, Y. Tsumuraya, and Y. Hashimoto Physiol. Plantarum 92 1994 286 296
35. M.A. Haque, T. Kotake, and Y. Tsumuraya Biosci. Biotechnol. Biochem. 69 2005 2170 2177
36. S.-C. Li, J.-W. Han, K.-C. Chen, and C.-S. Chen Phytochemistry 57 2001 349 359
37. Y. Tsumuraya, N. Mochizuki, Y. Hashimoto, and P. Kováč J. Biol. Chem. 265 1990 7207 7215
38. K. Okemoto, T. Uekita, Y. Tsumuraya, Y. Hashimoto, and T. Kasama Carbohydr. Res. 338 2003 219 230
39. T. Kotake, S. Kaneko, A. Kubomoto, M.A. Haque, H. Kobayashi, and Y. Tsumuraya Biochem. J. 377 2004 749 755
40. T. Kotake, N. Hirata, Y. Degi, M. Ishiguro, K. Kitazawa, R. Takata, H. Ichinose, S. Kaneko, K. Igarashi, M. Samejima, and Y. Tsumuraya J. Biol. Chem. 286 2011 27848 27854
41. A. Marchler-Bauer, J.B. Anderson, and M.K. Derbyshire Nucleic Acids Res. 35 2007 D237 D240
42. H. Ichinose, T. Kotake, Y. Tsumuraya, and S. Kaneko Biosci., Biotechnol., Biochem. 70 2006 2745 2750
43. Ling, N. X.-Y. Ph.D. Thesis, The University of Melbourne. Isolation and characterization of an exo-β-(1→3)-d-galactanase from Streptomyces sp. with activity on plant arabinogalactan-proteins, 2008.
44. N.X.-Y. Ling, F. Pettolino, M.-L. Liao, and A. Bacic Carbohydr. Res. 344 2009 1941 1946
45. H. Ichinose, A. Kuno, T. Kotake, M. Yoshida, K. Sakka, J. Hirabayashi, Y. Tsumuraya, and S. Kaneko Appl. Environ. Microbiol. 72 2006 3515 3523
46. H. Ichinose, M. Yoshida, T. Kotake, A. Kuno, K. Igarashi, Y. Tsumuraya, M. Samejima, J. Hirabayashi, H. Kobayashi, and S. Kaneko J. Biol. Chem. 280 2005 25820 25829
47. Y. Hashimoto, Y. Tsujisaka, and J. Fukumoto Nogeikagaku Zasshi 43 1969 831 836
48. M. Sekimata, K. Ogura, Y. Tsumuray, Y. Hashimoto, and S. Yamamoto Plant Physiol. 90 1989 567 574
49. T. Kotake, S. Dina, T. Konishi, S. Kaneko, K. Igarashi, M. Samejima, Y. Watanabe, K. Kimura, and Y. Tsumuraya Plant Physiol. 138 2005 1563 1576
50. Coutinho, P. M.; Henrissat, B. Carbohydrate-Active Enzymes, 1999. Server at URL: http://afmb.cnrs-mrs.fr/~pedro/CAZY/db/html.
51. S. Al-Assaf, T. Katayama, G.O. Phillips, Y. Sasaki, and P. Williams FFI J. 208 2003 771 780
52. L. Tan, J. Xu, D. Lamport, F. Qiu, C. Cottrell, J. Qian, and M. Kieliszewski Physiol. Plantarum 130 2007 Abstract 68
53. M. Sait, P. Hugenholz, and P.H. Janssen Environ. Microbiol. 4 2002 654 666
54. A. Tschech, and N. Pfennig Arch. Microbiol. 137 1984 163 167
55. F. Widdel, G.W. Kohring, and F. Mayer Arch. Microbiol. 134 1983 286 294
56. P. Kováč, R.B. Taylor, and C.P.J. Glaudemans J. Org. Chem. 50 1985 5323 5333
57. P. Kováč Carbohydr. Res. 153 1986 237 251
58. N. Nelson J. Biol. Chem. 153 1944 375 380
59. M. Somogyi J. Biol. Chem. 195 1952 19 23
60. S.H.A. Natera, K.L. Ford, A.M. Cassin, J.H. Patterson, E.J. Newbigin, and A. Bacic J. Proteome Res. 7 2008 1159 1187
61. S.-J. Zheng, B. Henken, E. Sofiari, E. Jacobsen, F.A. Krens, and C. Kik Transgenic Res. 10 2001 237 245
62. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar Mol. Biol. Evol 28 2011 2731 2739
63. R.M. Dawson, D.C. Elliott, W.H. Elliott, and K.M. Jones Data for Biochemical Research 3rd ed. pH, Buffers, and Physiological Media 1986 Clarendon Press Oxford, USA 417 448 Chapter 18
64. I.H. Segel Biochemical Calculations: How to Solve Mathematical Problems in General Biochemistry Enzymes 2nd ed. 1976 John Wiley & Sons New York 208 323 Chapter 4
65. M.F. Chaplin Anal. Biochem. 123 1982 336 341
66. M.A.J. Ferguson Chemical and Enzymic Analysis of Glycosyl- Phopatidylinositol Anchors N.M. Hooper, A.J. Turner, Lipid Modification of Proteins: A Practical Approach 1992 Oxford University Press 191 230
67. I.M. Sims, and A. Bacic Phytochemistry 38 1995 1397 1405
68. J.S. Kim, B.L. Reuhs, F. Michon, R.E. Kaiser, and R.G. Arumugham Carbohydr. Res. 341 2006 1061 1064
69. A. Dell, S. Chalabi, P.G. Hitchen, J. Jang-Lee, V. Ledger, S.J. North, P.-C. Pang, S. Parry, M. Sutton-Smith, B. Tissot, H.R. Morris, M. Panico, and S.M. Haslam Mass Spectrometry of Glycoprotein Glycans: Glycomics and Glycoproteomics J.P. Kamerling, G.-J. Boons, Y.C. Lee, A. Suzuki, N. Taniguchi, A.G.J. Voragen, Comprehensive Glycoscience: from Chemistry to System Biology Analysis of Glycans Polysaccharide Functional Properties Vol. 2 2007 Elsevier Amsterdam 69 93