Genes involved in alkane degradation in the alcanivorax hongdengensis strain A-11-3

Applied Microbiology and Biotechnology

Volumn 94, Issue 2, 2012, Pages 437-448

  Wang, Wanpeng ^a,b   Shao, Zongze ^a  

^a Key Laboratory of Marine Genetic Resources of Fujian Province   (China)

^b XIAMEN UNIVERSITY   (China)

Author keywords

Alcanivorax hongdengensis; Alkane hydroxylase; Biodegradation; Gene cluster; Marine oil pollution

Indexed keywords

ALCANIVORAX HONGDENGENSIS; ALKANE HYDROXYLASE; BRANCHED ALKANES; DEGRADATION MECHANISM; GENE CLUSTERS; GENES ENCODING; HETEROGENEOUS EXPRESSIONS; HYDROXYLASES; LONG CHAIN ALKANE; MARINE ENVIRONMENT; MARINE OIL POLLUTION; MULTIPLE SYSTEMS; N-ALKANES; PRISTANE; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; SINGAPORE; SIX GENES;

BIODEGRADATION; DEGRADATION; GENES; TRANSCRIPTION;

PARAFFINS;

ALKANE DERIVATIVE; ALKANE HYDROXYLASE B1; ALKANE HYDROXYLASE B2; CYTOCHROME P450; UNCLASSIFIED DRUG;

ALKANE; BACTERIUM; BIODEGRADATION; CLUSTER ANALYSIS; ENZYME ACTIVITY; GENE EXPRESSION; MARINE ENVIRONMENT; OIL POLLUTION; POLYMERASE CHAIN REACTION; SURFACE WATER;

ALCANIVORAX; ALCANIVORAX HONGDENGENSIS A 11 3; ARTICLE; BACTERIAL GENETICS; BACTERIAL GROWTH; CONTROLLED STUDY; DEGRADATION; GENE CLUSTER; GENE EXPRESSION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; UPREGULATION;

ALCANIVORACEAE; ALKANES; BIOTRANSFORMATION; CLONING, MOLECULAR; DNA, BACTERIAL; GENE EXPRESSION; METABOLIC NETWORKS AND PATHWAYS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; SEAWATER; SEQUENCE ANALYSIS, DNA; SINGAPORE;

STRAIT OF MALACCA; STRAIT OF SINGAPORE;

ALCANIVORAX; ALMA; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA;

EID: 84862673074     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-011-3818-x     Document Type: Article

References (28)

1. Ditta G, Stanfield S, Corbin D, Helinski DR (1980) Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc Natl Acad Sci USA 77:7347-7351 (Pubitemid 11189470)
2. Dower WJ, Miller JF, Ragsdale CW (1988) High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16:6127-6145
3. Feng L, Wang W, Cheng J, Ren Y, Zhao G, Gao C (2007) Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir. Proc Natl Acad Sci USA 104:5602-5607 (Pubitemid 47175727)
4. Hara A, Baik SH, Syutsubo K, Misawa N, Smits TH, van Beilen JB, Harayama S (2004) Cloning and functional analysis of alkB genes in Alcanivorax borkumensis SK2. Environ Microbiol 6:191-197 (Pubitemid 38261018)
5. Hara A, Syutsubo K, Harayama S (2003) Alcanivorax which prevails in oil-contaminated seawater exhibits broad substrate specificity for alkane degradation. Environ Microbiol 5:746-753 (Pubitemid 37056859)
6. Head IM, Jones DM (2006) Marine microorganisms make a meal of oil. Nat Rev Microbiol 4(3):173-82
7. Kloos K, Munch JC, Schloter M (2006) A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. J Microbiol Methods 66:486-496 (Pubitemid 44061998)
8. Koopmans MP, Rijpstra WIC, Klapwijk MM, de Leeuw JW, Lewanv MD, Damste JSS (1999) A thermal and chemical degradation approach to decipher pristine and phytane precursors in sedimentary organic matter. Org Geochem 30:1089-1104 (Pubitemid 29532228)
9. Kubota MM, Nodate M (2005) Isolation and functional analysis of cytochrome P450 CYP153A genes from various environments. Biosci Biotechnol Biochem 69(12):2421-30 (Pubitemid 43004383)
10. Liu C, Wang W, Wu Y, Zhou Z, Lai Q, Shao Z (2011) Multiple alkane hydroxylase systems in a marine alkane degrader, Alcanivorax dieselolei B-5. Environ Microbiol 13(5):1168-78
11. Liu C, Shao Z (2005) Alcanivorax dieselolei sp. nov., a novel alkanedegrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55:1181-1186 (Pubitemid 40740189)
12. Liu YC, Zhou TT, Zhang J, Xu L, Zhang ZH, Shen QR, Shen B (2009) Molecular characterization of the alkB gene in the thermophilic Geobacillus sp. strain MH-1. Research in Microbiology 160 (8):560-6
13. Luria SE, Adams JN, Ting RC (1960) Transduction of lactose-utilizing ability among strains of E. coli and S. dysenteriae and the properties of the transducing phage particles. Virology 12:348-390
14. Maier T, Forster HH (2001) Molecular characterization of the 56-kDa CYP153 from Acinetobacter sp. EB104. Biochem Biophys Res Commun 286(3):652-8 (Pubitemid 32912997)
15. Pirnik MP, Atlas RM, Bratha R (1974) Hydrocarbon metabolism by Brevibacterium erythrogenes: normal and branched alkanes. J Bacteriol 119(3):868-78
16. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA
17. Schneiker S, Martins dos Santos VA, Bartels D, Bekel T, Brecht M, Buhrmester J (2006) Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nat Biotechnol 24:997-1004 (Pubitemid 44215394)
18. Smits TH, Balada SB, Witholt B, van Beilen JB (2002) Functional analysis of alkane hydroxylases from gram-negative and grampositive bacteria. J Bacteriol 184:1733-1742 (Pubitemid 34188225)
19. Smits TH, Seeger MA, Witholt B, van Beilen JB (2001) New alkaneresponsive expression vectors for Escherichia coli and Pseudomonas. Plasmid 46:16-24 (Pubitemid 32848469)
20. Solano-Serena F, Marchal R, Heiss SV, Vandecasteele JP (2004) Degradation of isooctane by Mycobacterium austroafricanum IFP 2173: growth and catabolic pathway. J Appl Microbiol 97(3):629-39
21. Throne-Holst M, Wentzel A, Ellingsen TE, Kotlar HK, Zotchev SB (2007) Identification of novel genes involved in long-chain nalkane degradation by Acinetobacter sp. strain DSM 17874. Appl Environ Microbiol 73:3327-3332 (Pubitemid 46834985)
22. van Beilen JB, Eggink G, Enequist H, Bos R, Witholt B (1992) DNA sequence determination and functional characterization of the OCT-plasmid-encoded alkJKL genes of Pseudomonas oleovorans. Mol Microbiol 6:3121-3136
23. van Beilen JB, Funhoff EG, van Loon A, Just A, Kaysser L, Bouza M (2006) Cytochrome P450 alkane hydroxylases of the CYP153 family are common in alkane-degrading eubacteria lacking integral membrane alkane hydroxylases. Appl Environ Microbiol 72:59-65
24. van Beilen JB, Marin MM, Smits TH, Rothlisberger M, Franchini AG, Witholt B, Rojo F (2004) Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis. Environ Microbiol 6:264-273 (Pubitemid 38261025)
25. van Beilen JB, Wubbolts MG, Witholt B (1994) Genetics of alkane oxidation by Pseudomonas oleovorans. Biodegradation 5:161-174
26. Wang L, Wang W, Shao Z (2010) Gene diversity of CYP153A and AlkB alkane hydroxylases in oil-degrading bacteria isolated from the Atlantic Ocean. Environ Microbiol 12(5):1230-1242
27. Whyte LG, Smits TH (2002) Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. Appl Environ Microbiol 68(12):5933-42 (Pubitemid 36342425)
28. Wu Y, Lai Q, Zhou Z, Nan Q, Liu C, Shao Z (2009) Alcanivorax hongdengensis sp. nov., an alkane degrading bacterium isolated from surface seawater of the straits of Malacca and Singapore, producing a lipopeptide as its biosurfactant. Int J Syst Evol Microbiol 59:1474-1479