-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0034548825
-
Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN
-
Andreoni V., Bernasconi S., Colombo M., van Beilen J.B., and Cavalca L. Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN. Environ. Microbiol. 2 (2000) 572-577
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 572-577
-
-
Andreoni, V.1
Bernasconi, S.2
Colombo, M.3
van Beilen, J.B.4
Cavalca, L.5
-
3
-
-
0019495128
-
Occurrence of cytochrome P-450 in Acinetobacter strain after growth on n-hexadecane
-
Asperger O., Naumann A., and Kleber H.-P. Occurrence of cytochrome P-450 in Acinetobacter strain after growth on n-hexadecane. FEMS Microbiol. Lett. 11 (1981) 309-312
-
(1981)
FEMS Microbiol. Lett.
, vol.11
, pp. 309-312
-
-
Asperger, O.1
Naumann, A.2
Kleber, H.-P.3
-
4
-
-
0033002794
-
Diversity of bacterial strains degrading hexadecane in relation to the mode of substrate uptake
-
Bouchez-Naitali M., Rakatozafy H., Marchal R., Leveau J.-Y., and Vandecasteele J.-P. Diversity of bacterial strains degrading hexadecane in relation to the mode of substrate uptake. J. Appl. Microbiol. 86 (1999) 421-428
-
(1999)
J. Appl. Microbiol.
, vol.86
, pp. 421-428
-
-
Bouchez-Naitali, M.1
Rakatozafy, H.2
Marchal, R.3
Leveau, J.-Y.4
Vandecasteele, J.-P.5
-
5
-
-
0043123136
-
Formation of hydrocarbons by micro-organisms
-
Bird C.W., and Lynch J.M. Formation of hydrocarbons by micro-organisms. Chem. Soc. Rev. 3 (1974) 309-328
-
(1974)
Chem. Soc. Rev.
, vol.3
, pp. 309-328
-
-
Bird, C.W.1
Lynch, J.M.2
-
6
-
-
0018800089
-
Rapid alkaline extraction procedure for screening recombinant plasmid DNA
-
Birnboim H.C., and Doly J.A. Rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7 (1979) 1513-1523
-
(1979)
Nucleic Acids Res.
, vol.7
, pp. 1513-1523
-
-
Birnboim, H.C.1
Doly, J.A.2
-
7
-
-
0015612808
-
Genetic regulation of octane dissimilation plasmid in Pseudomonas
-
Chakrabarty A.M., Chou G., and Gunsalus I.C. Genetic regulation of octane dissimilation plasmid in Pseudomonas. Proc. Natl. Acad. Sci. 70 (1973) 1137-1140
-
(1973)
Proc. Natl. Acad. Sci.
, vol.70
, pp. 1137-1140
-
-
Chakrabarty, A.M.1
Chou, G.2
Gunsalus, I.C.3
-
8
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5 (1989) 164-166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
9
-
-
0032876852
-
Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population
-
Fogel G.B., Collins C.R., Li J., and Brunk C.F. Prokaryotic genome size and SSU rDNA copy number: estimation of microbial relative abundance from a mixed population. Microb. Ecol. 38 (1999) 93-113
-
(1999)
Microb. Ecol.
, vol.38
, pp. 93-113
-
-
Fogel, G.B.1
Collins, C.R.2
Li, J.3
Brunk, C.F.4
-
10
-
-
0342351970
-
Toxicity of n-alkanes, n-alk-1-enes, n-alkan-1-ols and n-alkyl-1-bromides towards yeasts
-
Gill C.O., and Ratledge C. Toxicity of n-alkanes, n-alk-1-enes, n-alkan-1-ols and n-alkyl-1-bromides towards yeasts. J. Gen. Microbiol. 72 (1972) 165-172
-
(1972)
J. Gen. Microbiol.
, vol.72
, pp. 165-172
-
-
Gill, C.O.1
Ratledge, C.2
-
11
-
-
0000925040
-
Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene
-
Grunstein M., and Hogness D.S. Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene. Proc. Natl. Acad. Sci. U. S. A. 72 (1975) 3961-3965
-
(1975)
Proc. Natl. Acad. Sci. U. S. A.
, vol.72
, pp. 3961-3965
-
-
Grunstein, M.1
Hogness, D.S.2
-
12
-
-
0035511721
-
Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8
-
Hamamura N., Yeager C.M., and Arp D.J. Two distinct monooxygenases for alkane oxidation in Nocardioides sp. strain CF8. Appl. Environ. Microbiol. 67 (2001) 4992-4998
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4992-4998
-
-
Hamamura, N.1
Yeager, C.M.2
Arp, D.J.3
-
13
-
-
28444466634
-
Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR
-
Heiss-Blanquet S., Benoit Y., Maréchaux C., and Monot F. Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR. J. Appl. Microbiol. 99 (2005) 1392-1403
-
(2005)
J. Appl. Microbiol.
, vol.99
, pp. 1392-1403
-
-
Heiss-Blanquet, S.1
Benoit, Y.2
Maréchaux, C.3
Monot, F.4
-
14
-
-
33745932519
-
IR-spectroscopic analysis of alkanes in soil, water and sediment - differenciation of mineral oil and biogene fractions (German)
-
Hellmann H. IR-spectroscopic analysis of alkanes in soil, water and sediment - differenciation of mineral oil and biogene fractions (German). Z. Wasser- und Abwasser-Forsch. 24 (1991) 226-232
-
(1991)
Z. Wasser- und Abwasser-Forsch.
, vol.24
, pp. 226-232
-
-
Hellmann, H.1
-
15
-
-
0033013283
-
Screening, nucleotide sequence, and biochemical characterization of an esterase from Pseudomonas fluorescens with high activity towards lactones
-
Khalameyzer V., Fischer I., Bornscheuer U.T., and Altenbuchner J. Screening, nucleotide sequence, and biochemical characterization of an esterase from Pseudomonas fluorescens with high activity towards lactones. Appl. Environ. Microbiol. 65 (1999) 477-482
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 477-482
-
-
Khalameyzer, V.1
Fischer, I.2
Bornscheuer, U.T.3
Altenbuchner, J.4
-
16
-
-
0037211529
-
Biosynthesis and secretion of plant cuticular wax
-
Kunst L., and Samuels A.L. Biosynthesis and secretion of plant cuticular wax. Prog. Lipid Res. 42 (2003) 51-80
-
(2003)
Prog. Lipid Res.
, vol.42
, pp. 51-80
-
-
Kunst, L.1
Samuels, A.L.2
-
17
-
-
0001857117
-
16S/23S sequencing
-
Stackebrandt E., and Goodfellow M. (Eds), John Wiley & Sons, Chichester
-
Lane D.J. 16S/23S sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematics (1991), John Wiley & Sons, Chichester 115-175
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
18
-
-
0025180428
-
Microbial degradation of hydrocarbons in the environment
-
Leahy J.G., and Colwell R.R. Microbial degradation of hydrocarbons in the environment. Microbiol. Rev. 54 (1990) 305-315
-
(1990)
Microbiol. Rev.
, vol.54
, pp. 305-315
-
-
Leahy, J.G.1
Colwell, R.R.2
-
20
-
-
3442891491
-
A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil
-
Luz A.P., Pellizari V.H., Whyte L.G., and Greer C.W. A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. Can. J. Microbiol. 50 (2004) 323-333
-
(2004)
Can. J. Microbiol.
, vol.50
, pp. 323-333
-
-
Luz, A.P.1
Pellizari, V.H.2
Whyte, L.G.3
Greer, C.W.4
-
21
-
-
0038534422
-
Isolation and characterization of a novel oxygenase that catalyzes the first step of n-alkane oxidation in Acinetobacter sp. strain M-1
-
Maeng J.H., Sakai Y., Tani Y., and Kato N. Isolation and characterization of a novel oxygenase that catalyzes the first step of n-alkane oxidation in Acinetobacter sp. strain M-1. J. Bacteriol. 178 (1997) 3695-3700
-
(1997)
J. Bacteriol.
, vol.178
, pp. 3695-3700
-
-
Maeng, J.H.1
Sakai, Y.2
Tani, Y.3
Kato, N.4
-
23
-
-
0038304116
-
Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa
-
Marin M.M., Yuste L., and Rojo F. Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa. J. Bacteriol. (2003) 3232-3237
-
(2003)
J. Bacteriol.
, pp. 3232-3237
-
-
Marin, M.M.1
Yuste, L.2
Rojo, F.3
-
24
-
-
0344953213
-
Cytochrome P-450 in alkane-assimilating yeasts
-
Ruckpaul K., and Rein H. (Eds), Taylor and Francis, London
-
Müller H.-G., Schunk W.-H., and Kärgel E. Cytochrome P-450 in alkane-assimilating yeasts. In: Ruckpaul K., and Rein H. (Eds). Microbial and Plant Cytochromes P-450 (1991), Taylor and Francis, London 87-127
-
(1991)
Microbial and Plant Cytochromes P-450
, pp. 87-127
-
-
Müller, H.-G.1
Schunk, W.-H.2
Kärgel, E.3
-
25
-
-
84986870589
-
The use of DAPI for identifying and counting aquatic microflora
-
Porter K.G., and Feig Y.S. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25 (1980) 943-948
-
(1980)
Limnol. Oceanogr.
, vol.25
, pp. 943-948
-
-
Porter, K.G.1
Feig, Y.S.2
-
26
-
-
0345451054
-
Alkane hydroxylase from Acinetobacter sp. strain ADP1 is encoded by alkM and belongs to a new family of bacterial integral-membrane hydrocarbon hydroxylases
-
Ratajczak A., Geiβdörfer W., and Hillen W. Alkane hydroxylase from Acinetobacter sp. strain ADP1 is encoded by alkM and belongs to a new family of bacterial integral-membrane hydrocarbon hydroxylases. Appl. Environ. Microbiol. 64 (1998) 1175-1179
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1175-1179
-
-
Ratajczak, A.1
Geißdörfer, W.2
Hillen, W.3
-
27
-
-
0019648762
-
Mechanisms and occurrence of microbial oxidation of long-chain alkanes
-
Rehm H.J., and Reiff I. Mechanisms and occurrence of microbial oxidation of long-chain alkanes. Adv. Biochem. Eng. 19 (1981) 175-215
-
(1981)
Adv. Biochem. Eng.
, vol.19
, pp. 175-215
-
-
Rehm, H.J.1
Reiff, I.2
-
28
-
-
0024582440
-
Characterization of the alkane-inducible cytochrome P450 (P450alk) gene from the yeast Candida tropicalis: identification of a new P450 gene family
-
Sanglar D., and Loper J.C. Characterization of the alkane-inducible cytochrome P450 (P450alk) gene from the yeast Candida tropicalis: identification of a new P450 gene family. Gene 76 (1989) 121-136
-
(1989)
Gene
, vol.76
, pp. 121-136
-
-
Sanglar, D.1
Loper, J.C.2
-
29
-
-
0038201984
-
Evidence linking the Pseudomonas oleovorans alkane ω-hydroxylase, an integral membrane diiron enzyme, and the fatty acid desaturase family
-
Shanklin J., and Whittle E. Evidence linking the Pseudomonas oleovorans alkane ω-hydroxylase, an integral membrane diiron enzyme, and the fatty acid desaturase family. FEBS Lett. 545 (2003) 188-192
-
(2003)
FEBS Lett.
, vol.545
, pp. 188-192
-
-
Shanklin, J.1
Whittle, E.2
-
31
-
-
0033171433
-
Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains
-
Smits T.H., Röthlisberger M., Witholt B., and van Beilen J.B. Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains. Environ. Microbiol. 1 (1999) 307-317
-
(1999)
Environ. Microbiol.
, vol.1
, pp. 307-317
-
-
Smits, T.H.1
Röthlisberger, M.2
Witholt, B.3
van Beilen, J.B.4
-
32
-
-
0028044090
-
Frequency of genes in aromatic and aliphatic hydrocarbon biodegradation pathways within bacterial populations from Alaskan sediments
-
Sotzsky J.B., Greer C.W., and Atlas R.M. Frequency of genes in aromatic and aliphatic hydrocarbon biodegradation pathways within bacterial populations from Alaskan sediments. Can. J. Microbiol. 40 (1994) 981-985
-
(1994)
Can. J. Microbiol.
, vol.40
, pp. 981-985
-
-
Sotzsky, J.B.1
Greer, C.W.2
Atlas, R.M.3
-
33
-
-
0035111115
-
Gene structures and regulation of the alkane hydroxylase complex in Acinetobacer sp. strain M-1
-
Tani A., Ishige T., Sakai Y., and Kato N. Gene structures and regulation of the alkane hydroxylase complex in Acinetobacer sp. strain M-1. J. Bacteriol. 183 (2001) 1819-1823
-
(2001)
J. Bacteriol.
, vol.183
, pp. 1819-1823
-
-
Tani, A.1
Ishige, T.2
Sakai, Y.3
Kato, N.4
-
34
-
-
0346767556
-
Hydrocarbons from plants: biosynthesis and utilization
-
Taylor S.E., and Calvin M. Hydrocarbons from plants: biosynthesis and utilization. Commun. Agric. Food Chem. 1 (1987) 1-26
-
(1987)
Commun. Agric. Food Chem.
, vol.1
, pp. 1-26
-
-
Taylor, S.E.1
Calvin, M.2
-
35
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
36
-
-
0028672044
-
Genetics of alkane oxidation by Pseudomonas oleovorans
-
van Beilen J.B., Wubbolts M.G., and Witholt B. Genetics of alkane oxidation by Pseudomonas oleovorans. Biodegradation 5 (1994) 161-174
-
(1994)
Biodegradation
, vol.5
, pp. 161-174
-
-
van Beilen, J.B.1
Wubbolts, M.G.2
Witholt, B.3
-
37
-
-
18744416524
-
Alkane hydroxylase homologues in Gram-positive strains
-
van Beilen J.B., Smits T.H.M., Whyte L.G., Schorcht S., Röthlisberger M., Plaggenmeier T., Engesser K.-H., and Witholt B. Alkane hydroxylase homologues in Gram-positive strains. Environ. Microbiol. 4 (2002) 676-682
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 676-682
-
-
van Beilen, J.B.1
Smits, T.H.M.2
Whyte, L.G.3
Schorcht, S.4
Röthlisberger, M.5
Plaggenmeier, T.6
Engesser, K.-H.7
Witholt, B.8
-
38
-
-
0041916075
-
Diversity of alkane hydroxylase systems in the environment
-
van Beilen J.B., Li Z., Duetz W.A., Smits T.H.M., and Witholt B. Diversity of alkane hydroxylase systems in the environment. Oil Gas Sci. Technol. 4 (2003) 427-440
-
(2003)
Oil Gas Sci. Technol.
, vol.4
, pp. 427-440
-
-
van Beilen, J.B.1
Li, Z.2
Duetz, W.A.3
Smits, T.H.M.4
Witholt, B.5
-
39
-
-
1342289955
-
Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis
-
van Beilen J.B., Marin M.M., Smits T.H.M., Rothlisberger M., Franchini A.G., Witholt B., and Rojo F. Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis. Environ. Microbiol. 6 (2004) 264-273
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 264-273
-
-
van Beilen, J.B.1
Marin, M.M.2
Smits, T.H.M.3
Rothlisberger, M.4
Franchini, A.G.5
Witholt, B.6
Rojo, F.7
-
40
-
-
0033850347
-
Distribution of alkB genes within n-alkane-degrading bacteria
-
Vomberg A., and Klinner U. Distribution of alkB genes within n-alkane-degrading bacteria. J. Appl. Microbiol. 89 (2000) 339-348
-
(2000)
J. Appl. Microbiol.
, vol.89
, pp. 339-348
-
-
Vomberg, A.1
Klinner, U.2
-
41
-
-
0028002904
-
Biotransformations catalyzed by the genus Rhodococcus
-
Warhurst A.M., and Fewson C.A. Biotransformations catalyzed by the genus Rhodococcus. Crit. Rev. Biotechnol. 14 (1994) 29-73
-
(1994)
Crit. Rev. Biotechnol.
, vol.14
, pp. 29-73
-
-
Warhurst, A.M.1
Fewson, C.A.2
-
42
-
-
0025528778
-
Physiology of aliphatic hydrocarbon-degrading microorganisms
-
Watkinson R.J., and Morgan P. Physiology of aliphatic hydrocarbon-degrading microorganisms. Biodegradation 1 (1990) 79-92
-
(1990)
Biodegradation
, vol.1
, pp. 79-92
-
-
Watkinson, R.J.1
Morgan, P.2
-
43
-
-
0029669110
-
Assessment of the biodegradation potential of psychrotrophic microorganisms
-
Whyte L.G., Greer C.W., and Inniss W.E. Assessment of the biodegradation potential of psychrotrophic microorganisms. Can. J. Microbiol. 42 (1995) 99-106
-
(1995)
Can. J. Microbiol.
, vol.42
, pp. 99-106
-
-
Whyte, L.G.1
Greer, C.W.2
Inniss, W.E.3
-
44
-
-
0242669334
-
Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531
-
Whyte L.G., Smits T.H.M., Labbé D., Witholt B., Greer C.W., and van Beilen J.B. Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. Appl. Environ. Microbiol. 68 (2002) 5933-5942
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5933-5942
-
-
Whyte, L.G.1
Smits, T.H.M.2
Labbé, D.3
Witholt, B.4
Greer, C.W.5
van Beilen, J.B.6
-
45
-
-
0035370088
-
Anaerobic biodegradation of saturated and aromatic hydrocarbons
-
Widdel F., and Rabus R. Anaerobic biodegradation of saturated and aromatic hydrocarbons. Curr. Opin. Biotechnol. 12 (2001) 259-276
-
(2001)
Curr. Opin. Biotechnol.
, vol.12
, pp. 259-276
-
-
Widdel, F.1
Rabus, R.2
-
46
-
-
0037331964
-
Tandem cytochrome P450 monooxygenase genes and splice variants in the white rot fungus Phanaerochaete chrysosporium: cloning, sequence analysis, and regulation of differential expression
-
Yadav J.S., Soellner M.B., Loper J.C., and Mishra P.K. Tandem cytochrome P450 monooxygenase genes and splice variants in the white rot fungus Phanaerochaete chrysosporium: cloning, sequence analysis, and regulation of differential expression. Fungal Genet. Biol. 38 (2003) 10-21
-
(2003)
Fungal Genet. Biol.
, vol.38
, pp. 10-21
-
-
Yadav, J.S.1
Soellner, M.B.2
Loper, J.C.3
Mishra, P.K.4
|