메뉴 건너뛰기




Volumn 14, Issue 4, 2012, Pages 459-467

Identification and Characterization of piRNA-Like Small RNAs in the Gonad of Sea Urchin (Strongylocentrotus nudus)

Author keywords

Microarray; piRNA like RNAs; Solexa sequencing; Strongylocentrotus nudus

Indexed keywords

ANIMAL GENOMES; GERMLINE STEM CELLS; SEA URCHIN; SMALL REGION; SMALL RNA; SOLEXA SEQUENCING; STRONGYLOCENTROTUS NUDUS;

EID: 84862487964     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-011-9426-z     Document Type: Article
Times cited : (13)

References (33)
  • 1
    • 36749037521 scopus 로고    scopus 로고
    • The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    • Aravin AA, Hannon GJ, Brennecke J (2007) The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318: 761-764.
    • (2007) Science , vol.318 , pp. 761-764
    • Aravin, A.A.1    Hannon, G.J.2    Brennecke, J.3
  • 2
    • 0035838369 scopus 로고    scopus 로고
    • Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline
    • Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM, Gvozdev VA (2001) Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol 11: 1017-1027.
    • (2001) Curr Biol , vol.11 , pp. 1017-1027
    • Aravin, A.A.1    Naumova, N.M.2    Tulin, A.V.3    Vagin, V.V.4    Rozovsky, Y.M.5    Gvozdev, V.A.6
  • 4
    • 70349633516 scopus 로고    scopus 로고
    • Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis
    • Armisen J, Gilchrist MJ, Wilczynska A, Standart N, Miska EA (2009) Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. Genome Res 19: 1766-1775.
    • (2009) Genome Res , vol.19 , pp. 1766-1775
    • Armisen, J.1    Gilchrist, M.J.2    Wilczynska, A.3    Standart, N.4    Miska, E.A.5
  • 5
    • 36949016056 scopus 로고    scopus 로고
    • Computational analysis of mouse piRNA sequence and biogenesis
    • doi: 10. 1371/journal. pcbi. 0030222
    • Betel D, Sheridan R, Marks DS, Sander C (2007) Computational analysis of mouse piRNA sequence and biogenesis. PLoS Comput Biol. doi: 10. 1371/journal. pcbi. 0030222.
    • (2007) PLoS Comput Biol.
    • Betel, D.1    Sheridan, R.2    Marks, D.S.3    Sander, C.4
  • 6
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ (2007) Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 8
    • 0036083480 scopus 로고    scopus 로고
    • miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis
    • Deng W, Lin H (2002) miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis. Dev Cell 2: 819-830.
    • (2002) Dev Cell , vol.2 , pp. 819-830
    • Deng, W.1    Lin, H.2
  • 9
    • 56949089330 scopus 로고    scopus 로고
    • piRNA-like RNAs in the marsupial Monodelphis domestica identify transcription clusters and likely marsupial transposon targets
    • Devor EJ, Huang L, Samollow PB (2008) piRNA-like RNAs in the marsupial Monodelphis domestica identify transcription clusters and likely marsupial transposon targets. Mamm Genome 19: 581-586.
    • (2008) Mamm Genome , vol.19 , pp. 581-586
    • Devor, E.J.1    Huang, L.2    Samollow, P.B.3
  • 11
    • 1842683164 scopus 로고    scopus 로고
    • In situ synthesis of oligonucleotide microarrays
    • Gao X, Gulari E, Zhou X (2004) In situ synthesis of oligonucleotide microarrays. Biopolymers 73: 579-596.
    • (2004) Biopolymers , vol.73 , pp. 579-596
    • Gao, X.1    Gulari, E.2    Zhou, X.3
  • 12
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • Girard A, Sachidanandam R, Hannon GJ, Carmell MA (2006) A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442: 199-202.
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 16
    • 54349089563 scopus 로고    scopus 로고
    • Zili is required for germ cell differentiation and meiosis in zebrafish
    • Houwing S, Berezikov E, Ketting RF (2008) Zili is required for germ cell differentiation and meiosis in zebrafish. EMBO J 27: 1-10.
    • (2008) EMBO J , vol.27 , pp. 1-10
    • Houwing, S.1    Berezikov, E.2    Ketting, R.F.3
  • 17
    • 33645227457 scopus 로고    scopus 로고
    • Self-synthesizing DNA transposons in eukaryotes
    • Kapitonov VV, Jurka J (2006) Self-synthesizing DNA transposons in eukaryotes. PNAS 103: 4540-4545.
    • (2006) Pnas , vol.103 , pp. 4540-4545
    • Kapitonov, V.V.1    Jurka, J.2
  • 18
    • 67649344774 scopus 로고    scopus 로고
    • The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes
    • Kawaoka S, Hayashi N, Suzuki Y, Abe H, Sugano S, Tomari Y, Shimada T, Katsuma S (2009) The Bombyx ovary-derived cell line endogenously expresses PIWI/PIWI-interacting RNA complexes. RNA 15: 1258-1264.
    • (2009) Rna , vol.15 , pp. 1258-1264
    • Kawaoka, S.1    Hayashi, N.2    Suzuki, Y.3    Abe, H.4    Sugano, S.5    Tomari, Y.6    Shimada, T.7    Katsuma, S.8
  • 21
    • 38849167412 scopus 로고    scopus 로고
    • Biogenesis and germline functions of piRNAs
    • Klattenhoff C, Theurkauf W (2008) Biogenesis and germline functions of piRNAs. Development 135: 3-9.
    • (2008) Development , vol.135 , pp. 3-9
    • Klattenhoff, C.1    Theurkauf, W.2
  • 22
    • 75649145014 scopus 로고    scopus 로고
    • Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
    • Lu J, Clark AG (2010) Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila. Genome Res 20: 212-227.
    • (2010) Genome Res , vol.20 , pp. 212-227
    • Lu, J.1    Clark, A.G.2
  • 26
    • 44149127238 scopus 로고    scopus 로고
    • The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians
    • Palakodeti D, Smielewska M, Lu YC, Yeo GW, Graveley BR (2008) The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians. RNA 14: 1174-1186.
    • (2008) Rna , vol.14 , pp. 1174-1186
    • Palakodeti, D.1    Smielewska, M.2    Lu, Y.C.3    Yeo, G.W.4    Graveley, B.R.5
  • 28
    • 38549141630 scopus 로고    scopus 로고
    • piRNABank: a web resource on classified and clustered Piwi-interacting RNAs
    • Sai Lakshmi S, Agrawal S (2008) piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. Nucleic Acids Res 36: D173-D177.
    • (2008) Nucleic Acids Res , vol.36
    • Sai Lakshmi, S.1    Agrawal, S.2
  • 29
    • 33747369856 scopus 로고    scopus 로고
    • Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
    • Saito K, Nishida KM, Mori T, Kawamura Y, Miyoshi K, Nagami T, Siomi H, Siomi MC (2006) Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev 20: 2214-2222.
    • (2006) Genes Dev , vol.20 , pp. 2214-2222
    • Saito, K.1    Nishida, K.M.2    Mori, T.3    Kawamura, Y.4    Miyoshi, K.5    Nagami, T.6    Siomi, H.7    Siomi, M.C.8
  • 30
    • 70350238350 scopus 로고    scopus 로고
    • The biogenesis and function PIWI proteins and piRNAs: progress and prospect
    • Thomson T, Lin H (2009) The biogenesis and function PIWI proteins and piRNAs: progress and prospect. Annu Rev Cell Dev Biol 25: 355-376.
    • (2009) Annu. Rev. Cell Dev. Biol , vol.25 , pp. 355-376
    • Thomson, T.1    Lin, H.2
  • 31
    • 33746502166 scopus 로고    scopus 로고
    • A distinct small RNA pathway silences selfish genetic elements in the germline
    • Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD (2006) A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324.
    • (2006) Science , vol.313 , pp. 320-324
    • Vagin, V.V.1    Sigova, A.2    Li, C.3    Seitz, H.4    Gvozdev, V.5    Zamore, P.D.6
  • 32
    • 70449604918 scopus 로고    scopus 로고
    • Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid
    • Yeung ML, Bennasser Y, Watashi K, Le SY, Houzet L, Jeang KT (2009) Pyrosequencing of small non-coding RNAs in HIV-1 infected cells: evidence for the processing of a viral-cellular double-stranded RNA hybrid. Nucleic Acids Res 37: 6575-6586.
    • (2009) Nucleic Acids Res , vol.37 , pp. 6575-6586
    • Yeung, M.L.1    Bennasser, Y.2    Watashi, K.3    Le, S.Y.4    Houzet, L.5    Jeang, K.T.6
  • 33
    • 33745599586 scopus 로고    scopus 로고
    • Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    • Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H (2006) Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. Genes Dev 20: 1732-1743.
    • (2006) Genes Dev , vol.20 , pp. 1732-1743
    • Watanabe, T.1    Takeda, A.2    Tsukiyama, T.3    Mise, K.4    Okuno, T.5    Sasaki, H.6    Minami, N.7    Imai, H.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.