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Volumn 38, Issue 15, 2010, Pages 5141-5151

Small RNA class transition from siRNA/piRNA to miRNA during pre-implantation mouse development

Author keywords

[No Author keywords available]

Indexed keywords

DICER; MICRORNA; PIWI INTERACTING RNA; SMALL INTERFERING RNA; DEAD BOX PROTEIN; DICER1 PROTEIN, MOUSE; RETROPOSON; RIBONUCLEASE; RIBONUCLEASE III;

EID: 77956117446     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq229     Document Type: Article
Times cited : (119)

References (49)
  • 1
    • 0035905766 scopus 로고    scopus 로고
    • Role for a bidentate ribonuclease in the initiation step of RNA interference
    • Bernstein, E., Caudy, A.A., Hammond, S.M. and Hannon, cG.J. (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature, 409, 363-366.
    • (2001) Nature , vol.409 , pp. 363-366
    • Bernstein, E.1    Caudy, A.A.2    Hammond, S.M.3    Hannon, G.J.4
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel,D.P. (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 5
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A. (2006) A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature, 442, 199-202.
    • (2006) Nature , vol.442 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 6
    • 33745599586 scopus 로고    scopus 로고
    • Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    • Watanabe,T., Takeda,A., Tsukiyama,T., Mise,K., Okuno,T., Sasaki,H., Minami,N. and Imai,H. (2006) Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. Genes Dev., 20, 1732-1743.
    • (2006) Genes Dev , vol.20 , pp. 1732-1743
    • Watanabe, T.1    Takeda, A.2    Tsukiyama, T.3    Mise, K.4    Okuno, T.5    Sasaki, H.6    Minami, N.7    Imai, H.8
  • 8
    • 35348914716 scopus 로고    scopus 로고
    • Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430
    • Choi,W.Y., Giraldez,A.J. and Schier,A.F. (2007) Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430. Science, 318, 271-274.
    • (2007) Science , vol.318 , pp. 271-274
    • Choi, W.Y.1    Giraldez, A.J.2    Schier, A.F.3
  • 10
    • 67349149082 scopus 로고    scopus 로고
    • MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells
    • Xu,N., Papagiannakopoulos,T., Pan,G., Thomson,J.A. and Kosik,K.S. (2009) MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell, 137, 647-658.
    • (2009) Cell , vol.137 , pp. 647-658
    • Xu, N.1    Papagiannakopoulos, T.2    Pan, G.3    Thomson, J.A.4    Kosik, K.S.5
  • 15
    • 0036083480 scopus 로고    scopus 로고
    • miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis
    • Deng,W. and Lin,H. (2002) miwi, a murine homolog of piwi, encodes a cytoplasmic protein essential for spermatogenesis. Dev. Cell, 2, 819-830.
    • (2002) Dev. Cell , vol.2 , pp. 819-830
    • Deng, W.1    Lin, H.2
  • 19
    • 0347763875 scopus 로고    scopus 로고
    • Dynamics of global gene expression changes during mouse preimplantation development
    • Hamatani,T., Carter,M.G., Sharov,A.A. and Ko,M.S. (2004) Dynamics of global gene expression changes during mouse preimplantation development. Dev Cell, 6, 117-131.
    • (2004) Dev Cell , vol.6 , pp. 117-131
    • Hamatani, T.1    Carter, M.G.2    Sharov, A.A.3    Ko, M.S.4
  • 20
    • 38049095768 scopus 로고    scopus 로고
    • Stochastic patterning in the mouse pre-implantation embryo
    • Dietrich,J.E. and Hiiragi,T. (2007) Stochastic patterning in the mouse pre-implantation embryo. Development, 134, 4219-4231.
    • (2007) Development , vol.134 , pp. 4219-4231
    • Dietrich, J.E.1    Hiiragi, T.2
  • 21
    • 65549115574 scopus 로고    scopus 로고
    • Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse
    • Rossant,J. and Tam,P.P. (2009) Blastocyst lineage formation, early embryonic asymmetries and axis patterning in the mouse. Development, 136, 701-713.
    • (2009) Development , vol.136 , pp. 701-713
    • Rossant, J.1    Tam, P.P.2
  • 22
    • 0033920352 scopus 로고    scopus 로고
    • Amino acids and preimplantation development of the mouse in protein-free potassium simplex optimized medium
    • Biggers,J.D., McGinnis,L.K. and Raffin,M. (2000) Amino acids and preimplantation development of the mouse in protein-free potassium simplex optimized medium. Biol. Reprod., 63, 281-293.
    • (2000) Biol. Reprod. , vol.63 , pp. 281-293
    • Biggers, J.D.1    McGinnis, L.K.2    Raffin, M.3
  • 26
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau,N.C., Lim,L.P., Weinstein,E.G. and Bartel,D.P. (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science, 294, 858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 27
    • 41049089088 scopus 로고    scopus 로고
    • Cloning of small RNA molecules
    • Ausubel,F. M. et al. (eds), Wiley InterScience, New York
    • Pfeffer,S., Lagos-Quintana,M. and Tuschl,T. (2005) Cloning of small RNA molecules. In Ausubel,F.M. et al. (eds), Current Protocols in Molecular Biology. Wiley InterScience, New York, pp. 26.4.1-26.4.18.
    • (2005) Current Protocols in Molecular Biology
    • Pfeffer, S.1    Lagos-Quintana, M.2    Tuschl, T.3
  • 28
    • 20444432353 scopus 로고    scopus 로고
    • RNA transcript profiling during zygotic gene activation in the preimplantation mouse embryo
    • Zeng,F. and Schultz,R.M. (2005) RNA transcript profiling during zygotic gene activation in the preimplantation mouse embryo. Dev. Biol., 283, 40-57.
    • (2005) Dev. Biol. , vol.283 , pp. 40-57
    • Zeng, F.1    Schultz, R.M.2
  • 29
    • 0036238993 scopus 로고    scopus 로고
    • Efficient delivery of dsRNA into zona-enclosed mouse oocytes and preimplantation embryos by electroporation
    • Grabarek,J.B., Plusa,B., Glover,D.M. and Zernicka-Goetz,M. (2002) Efficient delivery of dsRNA into zona-enclosed mouse oocytes and preimplantation embryos by electroporation. Genesis, 32, 269-276.
    • (2002) Genesis , vol.32 , pp. 269-276
    • Grabarek, J.B.1    Plusa, B.2    Glover, D.M.3    Zernicka-Goetz, M.4
  • 31
    • 1842665566 scopus 로고    scopus 로고
    • RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos
    • Svoboda,P., Stein,P., Anger,M., Bernstein,E., Hannon,G.J. and Schultz,R.M. (2004) RNAi and expression of retrotransposons MuERV-L and IAP in preimplantation mouse embryos. Dev. Biol., 269, 276-285.
    • (2004) Dev. Biol. , vol.269 , pp. 276-285
    • Svoboda, P.1    Stein, P.2    Anger, M.3    Bernstein, E.4    Hannon, G.J.5    Schultz, R.M.6
  • 32
    • 0027959928 scopus 로고
    • Oct-4 transcription factor is differentially expressed in the mouse embryo during establishment of the first two extraembryonic cell lineages involved in implantation
    • Palmieri,S.L., Peter,W., Hess,H. and Scholer,H.R. (1994) Oct-4 transcription factor is differentially expressed in the mouse embryo during establishment of the first two extraembryonic cell lineages involved in implantation. Dev. Biol., 166, 259-267.
    • (1994) Dev. Biol. , vol.166 , pp. 259-267
    • Palmieri, S.L.1    Peter, W.2    Hess, H.3    Scholer, H.R.4
  • 33
    • 19744365010 scopus 로고    scopus 로고
    • Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst
    • Strumpf,D., Mao,C.A., Yamanaka,Y., Ralston,A., Chawengsaksophak,K., Beck,F. and Rossant,J. (2005) Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst. Development, 132, 2093-2102.
    • (2005) Development , vol.132 , pp. 2093-2102
    • Strumpf, D.1    Mao, C.A.2    Yamanaka, Y.3    Ralston, A.4    Chawengsaksophak, K.5    Beck, F.6    Rossant, J.7
  • 36
    • 0035839126 scopus 로고    scopus 로고
    • Epigenetic reprogramming in mammalian development
    • Reik,W., Dean,W. and Walter,J. (2001) Epigenetic reprogramming in mammalian development. Science, 293, 1089-1093.
    • (2001) Science , vol.293 , pp. 1089-1093
    • Reik, W.1    Dean, W.2    Walter, J.3
  • 37
    • 3042854695 scopus 로고    scopus 로고
    • Epigenetic reprogramming during early development in mammals
    • Santos,F. and Dean,W. (2004) Epigenetic reprogramming during early development in mammals. Reproduction, 127, 643-651.
    • (2004) Reproduction , vol.127 , pp. 643-651
    • Santos, F.1    Dean, W.2
  • 39
    • 0042442335 scopus 로고    scopus 로고
    • Embryonic stem cell-specific MicroRNAs
    • Houbaviy,H.B., Murray,M.F. and Sharp,P.A. (2003) Embryonic stem cell-specific MicroRNAs. Dev. Cell, 5, 351-358.
    • (2003) Dev. Cell , vol.5 , pp. 351-358
    • Houbaviy, H.B.1    Murray, M.F.2    Sharp, P.A.3
  • 40
    • 36749013633 scopus 로고    scopus 로고
    • RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    • Calabrese,J.M., Seila,A.C., Yeo,G.W. and Sharp,P.A. (2007) RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. Proc. Natl Acad. Sci. USA, 104, 18097-18102.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 18097-18102
    • Calabrese, J.M.1    Seila, A.C.2    Yeo, G.W.3    Sharp, P.A.4
  • 42
    • 44649117905 scopus 로고    scopus 로고
    • Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
    • Chen,X., Xu,H., Yuan,P., Fang,F., Huss,M., Vega,V.B., Wong,E., Orlov,Y.L., Zhang,W., Jiang,J. et al. (2008) Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell, 133, 1106-1117.
    • (2008) Cell , vol.133 , pp. 1106-1117
    • Chen, X.1    Xu, H.2    Yuan, P.3    Fang, F.4    Huss, M.5    Vega, V.B.6    Wong, E.7    Orlov, Y.L.8    Zhang, W.9    Jiang, J.10
  • 44
    • 0034070944 scopus 로고    scopus 로고
    • DNA microarray analyses of genes regulated during the differentiation of embryonic stem cells
    • Kelly,D.L. and Rizzino,A. (2000) DNA microarray analyses of genes regulated during the differentiation of embryonic stem cells. Mol. Reprod. Dev., 56, 113-123.
    • (2000) Mol. Reprod. Dev. , vol.56 , pp. 113-123
    • Kelly, D.L.1    Rizzino, A.2
  • 45
    • 0037131389 scopus 로고    scopus 로고
    • "Stemness": transcriptional profiling of embryonic and adult stem cells
    • Ramalho-Santos,M., Yoon,S., Matsuzaki,Y., Mulligan,R.C. and Melton,D.A. (2002) "Stemness": transcriptional profiling of embryonic and adult stem cells. Science, 298, 597-600.
    • (2002) Science , vol.298 , pp. 597-600
    • Ramalho-Santos, M.1    Yoon, S.2    Matsuzaki, Y.3    Mulligan, R.C.4    Melton, D.A.5
  • 46
    • 30444443747 scopus 로고    scopus 로고
    • High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization
    • Yoshikawa,T., Piao,Y., Zhong,J., Matoba,R., Carter,M.G., Wang,Y., Goldberg,I. and Ko,M.S. (2006) High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. Gene Expr. Patterns, 6, 213-224.
    • (2006) Gene Expr. Patterns , vol.6 , pp. 213-224
    • Yoshikawa, T.1    Piao, Y.2    Zhong, J.3    Matoba, R.4    Carter, M.G.5    Wang, Y.6    Goldberg, I.7    Ko, M.S.8
  • 49
    • 54349104464 scopus 로고    scopus 로고
    • Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent Dicer-dependent small RNAs
    • Babiarz,J.E., Ruby,J.G., Wang,Y., Bartel,D.P. and Blelloch,R. (2008) Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes Dev., 22, 2773-2785.
    • (2008) Genes Dev , vol.22 , pp. 2773-2785
    • Babiarz, J.E.1    Ruby, J.G.2    Wang, Y.3    Bartel, D.P.4    Blelloch, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.