메뉴 건너뛰기




Volumn 11, Issue 2, 2012, Pages 281-292

Next Generation Transcriptome Sequencing and Quantitative Real-Time PCR Technologies for Characterisation of the Bemisia tabaci Asia 1 mtCOI Phylogenetic Clade

Author keywords

Asia 1 mtCOI; Bemisia tabaci; Next generation sequencing; Quantitative real time (QRT) PCR; Transcriptome; Whitefly

Indexed keywords

ALEYRODIDAE; BEMISIA TABACI; HEMIPTERA; HEXAPODA;

EID: 84862486980     PISSN: 20953119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S2095-3119(12)60012-4     Document Type: Article
Times cited : (7)

References (51)
  • 1
    • 50849127484 scopus 로고    scopus 로고
    • Organophosphates' resistance in the B-biotype of Bemisia tabaci (Hemiptera: Aleyrodidae) is associated with a point mutation in an ace1-type acetylcholinesterase and overexpression of carboxylesterase
    • Alon M, Alon F, Nauen R, Morin S Organophosphates' resistance in the B-biotype of Bemisia tabaci (Hemiptera: Aleyrodidae) is associated with a point mutation in an ace1-type acetylcholinesterase and overexpression of carboxylesterase. Insect Biochemistry and Molecular Biology 2008, 38:940-949.
    • (2008) Insect Biochemistry and Molecular Biology , vol.38 , pp. 940-949
    • Alon, M.1    Alon, F.2    Nauen, R.3    Morin, S.4
  • 3
    • 84856467843 scopus 로고    scopus 로고
    • Genomic resources for the brown planthopper, Nilaparvata lugens: pyrosequencing the transcriptome and microarray design
    • Bass C, Hebsgaard MB, Hughes J Genomic resources for the brown planthopper, Nilaparvata lugens: pyrosequencing the transcriptome and microarray design. Insect Science 2011, 10.1111/j.1744-7917.2011.01440.x.
    • (2011) Insect Science
    • Bass, C.1    Hebsgaard, M.B.2    Hughes, J.3
  • 4
    • 0030816831 scopus 로고    scopus 로고
    • Dynamic genome organization and gene evolution by positive selection in geminivirus (Geminiviridae)
    • Bradeen JM, Timmermans MC, Messing J Dynamic genome organization and gene evolution by positive selection in geminivirus (Geminiviridae). Molecular Biology and Evolution 1997, 14:1114-1124.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 1114-1124
    • Bradeen, J.M.1    Timmermans, M.C.2    Messing, J.3
  • 6
    • 0029142311 scopus 로고
    • The sweetpotato/silverleaf whiteflies: biotypes of Bemisia tabaci (Genn.), or a species complex?
    • Brown JK, Frohlich DR, Rosell RC The sweetpotato/silverleaf whiteflies: biotypes of Bemisia tabaci (Genn.), or a species complex?. Annual Review of Entomology 1995, 40:511-534.
    • (1995) Annual Review of Entomology , vol.40 , pp. 511-534
    • Brown, J.K.1    Frohlich, D.R.2    Rosell, R.C.3
  • 9
    • 7044226474 scopus 로고    scopus 로고
    • Dual begomovirus infections and high Bemisia tabaci populations: two factors driving the spread of a cassava mosaic disease pandemic
    • Colvin J, Omongo CA, Maruthi MN, Otim-Nape GW, Thresh JM Dual begomovirus infections and high Bemisia tabaci populations: two factors driving the spread of a cassava mosaic disease pandemic. Plant Pathology 2004, 53:577-584.
    • (2004) Plant Pathology , vol.53 , pp. 577-584
    • Colvin, J.1    Omongo, C.A.2    Maruthi, M.N.3    Otim-Nape, G.W.4    Thresh, J.M.5
  • 11
    • 84862499091 scopus 로고    scopus 로고
    • Whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae) genomics initiative. In: 5th International Bemisia Workshop. 9-12/11/2009, Guangzhou, China.
    • Colvin J, Seal S E, Bailey D S. 2009. Whitefly, Bemisia tabaci (Hemiptera: Aleyrodidae) genomics initiative. In: 5th International Bemisia Workshop. 9-12/11/2009, Guangzhou, China.
    • (2009)
    • Colvin, J.1    Seal, S.E.2    Bailey, D.S.3
  • 12
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Götz, S.2    García-Gómez, J.M.3    Terol, J.4    Talón, M.5    Robles, M.6
  • 13
    • 80053579009 scopus 로고    scopus 로고
    • The whitefly genome - White Paper: A proposal to sequence multiple genomes of Bemisia tabaci. Chapter 17
    • Springer Science, Dordrecht, The Netherlands, P.A. Stansly, S.E. Naranjo (Eds.)
    • Czosnek H, Brown JK The whitefly genome - White Paper: A proposal to sequence multiple genomes of Bemisia tabaci. Chapter 17. Bemisia, Bio-Nomics and Management of a Global Pest 2010, 503-532. Springer Science, Dordrecht, The Netherlands. P.A. Stansly, S.E. Naranjo (Eds.).
    • (2010) Bemisia, Bio-Nomics and Management of a Global Pest , pp. 503-532
    • Czosnek, H.1    Brown, J.K.2
  • 14
    • 0032578811 scopus 로고    scopus 로고
    • Challenges with managing resistance in agricultural pests, exemplified by the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae)
    • (Series B)
    • Denholm I, Cahill M, Dennehy T, Horowitz AR Challenges with managing resistance in agricultural pests, exemplified by the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae). Philosophical Transactions of the Royal Society of London 1998, 353:1757-1767. (Series B).
    • (1998) Philosophical Transactions of the Royal Society of London , vol.353 , pp. 1757-1767
    • Denholm, I.1    Cahill, M.2    Dennehy, T.3    Horowitz, A.R.4
  • 15
    • 77749280082 scopus 로고    scopus 로고
    • Refined global analysis of Bemisia tabaci (Gennadius) (Hemiptera: Sternorrhyncha: Aleyrodoidea) mitochondrial COI to identify species level genetic boundaries
    • Dinsdale A, Cook L, Riginos C, Buckley Y, De Barro PJ Refined global analysis of Bemisia tabaci (Gennadius) (Hemiptera: Sternorrhyncha: Aleyrodoidea) mitochondrial COI to identify species level genetic boundaries. Annals of the Entomological Society of America 2010, 103:196-208.
    • (2010) Annals of the Entomological Society of America , vol.103 , pp. 196-208
    • Dinsdale, A.1    Cook, L.2    Riginos, C.3    Buckley, Y.4    De Barro, P.J.5
  • 16
    • 0027898491 scopus 로고
    • Characterization of differences between whiteflies using RAPD-PCR
    • Gawel NJ, Bartlett AC Characterization of differences between whiteflies using RAPD-PCR. Insect Molecular Biology 1993, 2:33-38.
    • (1993) Insect Molecular Biology , vol.2 , pp. 33-38
    • Gawel, N.J.1    Bartlett, A.C.2
  • 17
    • 34547626395 scopus 로고    scopus 로고
    • Gene expression in pyriproxyfen-resistant Bemisia tabaci Q biotype
    • Ghanim M, Kontsedalov S Gene expression in pyriproxyfen-resistant Bemisia tabaci Q biotype. Pest Management Science 2007, 63:776-783.
    • (2007) Pest Management Science , vol.63 , pp. 776-783
    • Ghanim, M.1    Kontsedalov, S.2
  • 18
    • 77956036018 scopus 로고    scopus 로고
    • The transmission efficiency of tomato yellow leaf curl virus by the whitefly Bemisia tabaci is correlated with the presence of a specific symbiotic bacterium species
    • Gottlieb Y, Zchori-Fein E, Mozes-Daube N, Kontsedalov S, Skaljac M, Brumin M, Sobol I, Czosnek H, Vavre F, Fleury F, et al. The transmission efficiency of tomato yellow leaf curl virus by the whitefly Bemisia tabaci is correlated with the presence of a specific symbiotic bacterium species. Journal of Virology 2010, 84:9310-9317.
    • (2010) Journal of Virology , vol.84 , pp. 9310-9317
    • Gottlieb, Y.1    Zchori-Fein, E.2    Mozes-Daube, N.3    Kontsedalov, S.4    Skaljac, M.5    Brumin, M.6    Sobol, I.7    Czosnek, H.8    Vavre, F.9    Fleury, F.10
  • 20
    • 26244452955 scopus 로고    scopus 로고
    • Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts
    • (B: Biological Sciences)
    • Hurst GDD, Jiggins FM Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society 2005, 272:1525-1534. (B: Biological Sciences).
    • (2005) Proceedings of the Royal Society , vol.272 , pp. 1525-1534
    • Hurst, G.D.D.1    Jiggins, F.M.2
  • 21
    • 77649141259 scopus 로고    scopus 로고
    • Genome sequence of the pea aphid acyrthosiphon pisum
    • International Aphid Genomics Consortium
    • International Aphid Genomics Consortium Genome sequence of the pea aphid acyrthosiphon pisum. PLoS Biology 2010, 8:e1000313.
    • (2010) PLoS Biology , vol.8
  • 24
    • 77957926979 scopus 로고    scopus 로고
    • Comparing de novo assemblers for 454 transcriptome data
    • Kumar S, Blaxter ML Comparing de novo assemblers for 454 transcriptome data. BMC Genomics 2010, 11:571.
    • (2010) BMC Genomics , vol.11 , pp. 571
    • Kumar, S.1    Blaxter, M.L.2
  • 25
    • 33745862034 scopus 로고    scopus 로고
    • Whitefly (Bemisia tabaci) genome project: analysis of sequenced clones from egg, instar, and adult (viruliferous and non-viruliferous) cDNA libraries
    • Leshkowitz D, Gazit S, Reuveni E, Ghanim M, Czosnek H, McKenzie C, Shatters RL, Brown JK Whitefly (Bemisia tabaci) genome project: analysis of sequenced clones from egg, instar, and adult (viruliferous and non-viruliferous) cDNA libraries. BMC Genomics 2006, 7:79.
    • (2006) BMC Genomics , vol.7 , pp. 79
    • Leshkowitz, D.1    Gazit, S.2    Reuveni, E.3    Ghanim, M.4    Czosnek, H.5    McKenzie, C.6    Shatters, R.L.7    Brown, J.K.8
  • 26
    • 1442340284 scopus 로고    scopus 로고
    • How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets
    • Lin CP, Danforth BN How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets. Molecular Phylogenetics and Evolution 2004, 30:686-702.
    • (2004) Molecular Phylogenetics and Evolution , vol.30 , pp. 686-702
    • Lin, C.P.1    Danforth, B.N.2
  • 27
    • 37249070274 scopus 로고    scopus 로고
    • Asymmetric mating interactions drive widespread invasion and displacement in a whitefly
    • Liu SS, De Barro PJ, Xu J, Luan JB, Zang LS, Ruan YM, Wan FH Asymmetric mating interactions drive widespread invasion and displacement in a whitefly. Science 2007, 318:1769-1772.
    • (2007) Science , vol.318 , pp. 1769-1772
    • Liu, S.S.1    De Barro, P.J.2    Xu, J.3    Luan, J.B.4    Zang, L.S.5    Ruan, Y.M.6    Wan, F.H.7
  • 28
    • 79952577601 scopus 로고    scopus 로고
    • Global analysis of the transcriptional response of whitefly to tomato yellow leaf curl China virus reveals their relationship of coevolved adaptations
    • Luan JB, Li JM, Varela N, Wang YL, Li FF, Bao YY, Zhang CX, Liu SS, Wang XW Global analysis of the transcriptional response of whitefly to tomato yellow leaf curl China virus reveals their relationship of coevolved adaptations. Journal of Virology 2011, 85:3330-3340.
    • (2011) Journal of Virology , vol.85 , pp. 3330-3340
    • Luan, J.B.1    Li, J.M.2    Varela, N.3    Wang, Y.L.4    Li, F.F.5    Bao, Y.Y.6    Zhang, C.X.7    Liu, S.S.8    Wang, X.W.9
  • 29
    • 48249092983 scopus 로고    scopus 로고
    • Parasitization by the wasp Eretmocerus mundus induces transcription of genes related to immune response and symbiotic bacteria proliferation in the whitefly Bemisia tabaci
    • Mahadav A, Gerling D, Gottlieb Y, Czosnek H, Ghanim M Parasitization by the wasp Eretmocerus mundus induces transcription of genes related to immune response and symbiotic bacteria proliferation in the whitefly Bemisia tabaci. BMC Genomics 2008, 9:342.
    • (2008) BMC Genomics , vol.9 , pp. 342
    • Mahadav, A.1    Gerling, D.2    Gottlieb, Y.3    Czosnek, H.4    Ghanim, M.5
  • 30
    • 70349829420 scopus 로고    scopus 로고
    • Thermotolerance and gene expression following heat stress in the whitefly Bemisia tabaci B and Q biotypes
    • Mahadav A, Kontsedalov S, Czosnek H, Ghanim M Thermotolerance and gene expression following heat stress in the whitefly Bemisia tabaci B and Q biotypes. Insect Biochemistry and Molecular Biology 2009, 39:668-676.
    • (2009) Insect Biochemistry and Molecular Biology , vol.39 , pp. 668-676
    • Mahadav, A.1    Kontsedalov, S.2    Czosnek, H.3    Ghanim, M.4
  • 31
    • 0036078962 scopus 로고    scopus 로고
    • Co-adaptation between cassava mosaic geminiviruses and their local vector populations
    • Maruthi MN, Colvin J, Seal SE, Gibson G, Cooper J Co-adaptation between cassava mosaic geminiviruses and their local vector populations. Virus Research 2002, 86:71-85.
    • (2002) Virus Research , vol.86 , pp. 71-85
    • Maruthi, M.N.1    Colvin, J.2    Seal, S.E.3    Gibson, G.4    Cooper, J.5
  • 32
    • 0035088846 scopus 로고    scopus 로고
    • The emergence and dissemination of whitefly-transmitted geminiviruses in Latin America
    • Morales FJ, Anderson PK The emergence and dissemination of whitefly-transmitted geminiviruses in Latin America. Archives of Virology 2001, 146:415-441.
    • (2001) Archives of Virology , vol.146 , pp. 415-441
    • Morales, F.J.1    Anderson, P.K.2
  • 33
    • 0033616529 scopus 로고    scopus 로고
    • A GroEL homologue from endosymbiotic bacteria of the whitefly Bemisia tabaci is implicated in the circulative transmission of tomato yellow leaf curl virus
    • Morin S, Gottlieb Y, Zeidan M, Czosnek H, Verbeek M, van den Heuvel JFJM A GroEL homologue from endosymbiotic bacteria of the whitefly Bemisia tabaci is implicated in the circulative transmission of tomato yellow leaf curl virus. Virology 1999, 256:75-84.
    • (1999) Virology , vol.256 , pp. 75-84
    • Morin, S.1    Gottlieb, Y.2    Zeidan, M.3    Czosnek, H.4    Verbeek, M.5    van den Heuvel, J.F.J.M.6
  • 36
    • 0035209816 scopus 로고    scopus 로고
    • The Bemisia tabaci species complex
    • Perring TM The Bemisia tabaci species complex. Crop Protection 2001, 20:725-737.
    • (2001) Crop Protection , vol.20 , pp. 725-737
    • Perring, T.M.1
  • 38
    • 33745282962 scopus 로고    scopus 로고
    • Occurrence of three genotypic clusters of Bemisia tabaci and the rapid spread of the B biotype in south India
    • Rekha AR, Maruthi MN, Muniyappa V, Colvin J Occurrence of three genotypic clusters of Bemisia tabaci and the rapid spread of the B biotype in south India. Entomologia Experimentalis et Applicata 2005, 117:221-233.
    • (2005) Entomologia Experimentalis et Applicata , vol.117 , pp. 221-233
    • Rekha, A.R.1    Maruthi, M.N.2    Muniyappa, V.3    Colvin, J.4
  • 39
    • 30344462984 scopus 로고    scopus 로고
    • Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control
    • Seal S, van den Bosch F, Jeger M Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences 2006, 25:23-46.
    • (2006) Critical Reviews in Plant Sciences , vol.25 , pp. 23-46
    • Seal, S.1    van den Bosch, F.2    Jeger, M.3
  • 40
    • 65349153738 scopus 로고    scopus 로고
    • Improved DNA barcoding method for Bemisia tabaci and related Aleyrodidae: development of universal and Bemisia tabaci biotype-specific mitochondrial cytochrome c oxidase I polymerase chain reaction primers
    • Shatters RG, Powell CA, Boykin LA, Liansheng H, McKenzie CL Improved DNA barcoding method for Bemisia tabaci and related Aleyrodidae: development of universal and Bemisia tabaci biotype-specific mitochondrial cytochrome c oxidase I polymerase chain reaction primers. Journal of Economic Entomology 2009, 102:750-758.
    • (2009) Journal of Economic Entomology , vol.102 , pp. 750-758
    • Shatters, R.G.1    Powell, C.A.2    Boykin, L.A.3    Liansheng, H.4    McKenzie, C.L.5
  • 41
    • 18144421122 scopus 로고    scopus 로고
    • Differential transcriptional activity of plant-pathogenic begomoviruses in their whitefly vector (Bemisia tabaci, Gennadius: Hemiptera: Aleyrodidae)
    • Sinisterra XH, McKenzie CL, Hunter WB, Powell CA, Shatters RG Differential transcriptional activity of plant-pathogenic begomoviruses in their whitefly vector (Bemisia tabaci, Gennadius: Hemiptera: Aleyrodidae). Journal of General Virology 2005, 86:1525-1532.
    • (2005) Journal of General Virology , vol.86 , pp. 1525-1532
    • Sinisterra, X.H.1    McKenzie, C.L.2    Hunter, W.B.3    Powell, C.A.4    Shatters, R.G.5
  • 42
    • 0041955201 scopus 로고    scopus 로고
    • Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90
    • Stechmann A, Cavalier-Smith T Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90. Journal of Molecular Evolution 2003, 57:408-419.
    • (2003) Journal of Molecular Evolution , vol.57 , pp. 408-419
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 43
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28:2731-2739.
    • (2011) Molecular Biology and Evolution , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 44
    • 55749115780 scopus 로고    scopus 로고
    • Molecular characteristics of insect vitellogenins
    • Tufail M, Takeda M Molecular characteristics of insect vitellogenins. Journal of Insect Physiology 2008, 54:1447-1458.
    • (2008) Journal of Insect Physiology , vol.54 , pp. 1447-1458
    • Tufail, M.1    Takeda, M.2
  • 45
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalisation of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH
    • Vandesompele J, de Preter K, Pattyn F, Poppe B, van Roy N, de Paepe A, Speleman F Accurate normalisation of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 2002, 3:0034. RESEARCH.
    • (2002) Genome Biology , vol.3 , pp. 0034
    • Vandesompele, J.1    de Preter, K.2    Pattyn, F.3    Poppe, B.4    van Roy, N.5    de Paepe, A.6    Speleman, F.7
  • 46
    • 0037905791 scopus 로고    scopus 로고
    • Emerging geminivirus problems. A serious threat to crop production
    • Varma A, Malathi VG Emerging geminivirus problems. A serious threat to crop production. Annals of Applied Biology 2003, 142:145-164.
    • (2003) Annals of Applied Biology , vol.142 , pp. 145-164
    • Varma, A.1    Malathi, V.G.2
  • 47
    • 77954450225 scopus 로고    scopus 로고
    • De novo characterisation of a whitefly transcriptome and analysis of its gene expression during development
    • Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, Liu SS De novo characterisation of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics 2010, 11:400.
    • (2010) BMC Genomics , vol.11 , pp. 400
    • Wang, X.W.1    Luan, J.B.2    Li, J.M.3    Bao, Y.Y.4    Zhang, C.X.5    Liu, S.S.6
  • 48
    • 80053174885 scopus 로고    scopus 로고
    • Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species
    • Wang XW, Luan JB, Li JM, Su YL, Xia J, Liu SS Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species. BMC Genomics 2011, 12:458.
    • (2011) BMC Genomics , vol.12 , pp. 458
    • Wang, X.W.1    Luan, J.B.2    Li, J.M.3    Su, Y.L.4    Xia, J.5    Liu, S.S.6
  • 49
    • 77955852536 scopus 로고    scopus 로고
    • Reproductive incompatibility among genetic groups of Bemisia tabaci supports the proposition that the whitefly is a cryptic species complex
    • Xu J, De Barro PJ, Liu SS Reproductive incompatibility among genetic groups of Bemisia tabaci supports the proposition that the whitefly is a cryptic species complex. Bulletin of Entomological Research 2010, 100:359-366.
    • (2010) Bulletin of Entomological Research , vol.100 , pp. 359-366
    • Xu, J.1    De Barro, P.J.2    Liu, S.S.3
  • 50
    • 68949167350 scopus 로고    scopus 로고
    • Cloning and expression of heat shock protein genes in two whitefly species in response to thermal stress
    • Yu H, Wan FH Cloning and expression of heat shock protein genes in two whitefly species in response to thermal stress. Journal of Applied Entomology 2009, 133:602-614.
    • (2009) Journal of Applied Entomology , vol.133 , pp. 602-614
    • Yu, H.1    Wan, F.H.2
  • 51
    • 0035046755 scopus 로고    scopus 로고
    • Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction
    • Zhu YY, Machleder EM, Chenchik A, Li R, Siebert PD Reverse transcriptase template switching: a SMART approach for full-length cDNA library construction. Biotechniques 2001, 30:892-897.
    • (2001) Biotechniques , vol.30 , pp. 892-897
    • Zhu, Y.Y.1    Machleder, E.M.2    Chenchik, A.3    Li, R.4    Siebert, P.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.