ECHO probes: Fluorescence emission control for nucleic acid imaging

Journal of Photochemistry and Photobiology C: Photochemistry Reviews

Volumn 13, Issue 2, 2012, Pages 112-123

  Wang, Dan Ohtan ^a   Okamoto, Akimitsu ^b,c  

^a KYOTO UNIVERSITY   (Japan)

^b RIKEN   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

Excitonic interaction; Functional oligodeoxynucleotides; Live cell RNA imaging; Single nucleotide polymorphism detection

Indexed keywords

BIOLOGICAL APPLICATIONS; CELLULAR BEHAVIORS; EXCITONIC INTERACTION; FLUORESCENCE EMISSION; FLUORESCENT DETECTION; FUNCTIONAL MODULES; GENOMIC INFORMATION; LIVING CELL; MULTI-COLOR DETECTION; NUCLEIC ACID DETECTION; OLIGODEOXYNUCLEOTIDES; ORGANIC DYE; PROBE TECHNOLOGY; REAL-TIME DETECTION; SINGLE NUCLEOTIDE POLYMORPHISM DETECTIONS; SPECIFIC SEQUENCES;

EMISSION CONTROL; FLUORESCENCE; GENES; OLIGONUCLEOTIDES; RNA;

PROBES;

EID: 84862235405     PISSN: 13895567     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jphotochemrev.2012.03.001     Document Type: Review

References (65)

1. Tyagi S., Kramer F.R. Nat. Biotechnol. 1996, 14:303.
2. Biggins J.B., Prudent J.R., Marshall D.J., Ruppen M., Thorson J.S. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:13537.
3. Whitcombe D., Theaker J., Guy S.P., Brown T., Little S. Nat. Biotechnol. 1999, 17:804.
4. Holland P.M., Abramson R.D., Watson R., Gelfand D.H. Proc. Natl. Acad. Sci. U.S.A. 1991, 88:7276.
5. Okamoto A., Ichiba T., Saito I. J. Am. Chem. Soc. 2004, 126:8364.
6. Lee H.N., Xu Z., Kim S.K., Swamy K.M., Kim Y., Kim S.J., Yoon J. J. Am. Chem. Soc. 2007, 129:3828.
7. Nishizawa S., Kato Y., Teramae N. J. Am. Chem. Soc. 1999, 121:9463.
8. Aoki I., Kawabata H., Nakashima K., Shinkai S. J. Chem. Soc. Chem. Commun. 1991, 1771.
9. Miura T., Urano Y., Tanaka K., Nagano T., Ohkubo K., Fukuzumi S. J. Am. Chem. Soc. 2003, 125:8666.
10. Urano Y., Kamiya M., Kanda K., Ueno T., Hirose K., Nagano T. J. Am. Chem. Soc. 2005, 127:4888.
11. Fages F., Desvergne J.P., Bouaslaurent H., Marsau P., Lehn J.M., Kotzybahibert F., Albrechtgary A.M., Aljoubbeh M. J. Am. Chem. Soc. 1989, 111:8672.
12. Bissell R.A., De Silva A.P., Gunaratne H.Q.N., Lynch P.L.M., McCoy C.P., Maguire G.E.M., Sandanayake K.R.A.S. ACS Symp. Ser. 1993, 538:45.
13. James T.D., Sandanayake K.R.A.S., Iguchi R., Shinkai S. J. Am. Chem. Soc. 1995, 117:8982.
14. Walkup G.K., Burdette S.C., Lippard S.J., Tsien R.Y. J. Am. Chem. Soc. 2000, 122:5644.
15. Cohen B.E., McAnaney T.B., Park E.S., Jan Y.N., Boxer S.G., Jan L.Y. Science 2002, 296:1700.
16. Grynkiewicz G., Poenie M., Tsien R.Y. J. Biol. Chem. 1985, 260:3440.
17. Macgregor R.B., Weber G. Nature 1986, 319:70.
18. Okamoto A., Tainaka K., Nishiza K., Saito I. J. Am. Chem. Soc. 2005, 127:13128.
19. Tainaka K., Tanaka K., Ikeda S., Nishiza K., Unzai T., Fujiwara Y., Saito I., Okamoto A. J. Am. Chem. Soc. 2007, 129:4776.
20. Weber G., Farris F.J. Biochemistry 1979, 18:3075.
21. Qian F., Zhang C., Zhang Y., He W., Gao X., Hu P., Guo Z. J. Am. Chem. Soc. 2009, 131:1460.
22. Pierce D.W., Boxer S.G. J. Phys. Chem. 1992, 96:5560.
23. Martin M.M., Plaza P., Meyer Y.H., Badaoui F., Bourson J., Lefevre J.P., Valeur B. J. Phys. Chem. 1996, 100:6879.
24. Okamoto A., Tainaka K., Unzai T., Saito I. Tetrahedron 2007, 63:3465.
25. Nygren J., Svanvik N., Kubista M. Biopolymers 1998, 46:39.
26. Lee L.G., Chen C.H., Chiu L.A. Cytometry 1986, 7:508.
27. Tekola P., Baak J.P., Belien J.A., Brugghe J. Cytometry 1994, 17:191.
28. Hanafi-Bagby D., Piunno P.A.E., Wust C.C., Krull U.J. Anal. Chim. Acta 2000, 411:19.
29. Wang X., Krull U.J. Anal. Chim. Acta 2002, 470:57.
30. Wang X., Krull U.J. Bioorg. Med. Chem. Lett. 2005, 15:1725.
31. Asseline U., Chassignol M., Aubert Y., Roig V. Org. Biomol. Chem. 2006, 4:1949.
32. Lartia R., Asseline U. Chem. Eur. J. 2006, 12:2270.
33. Svanvik N., Nygren J., Westman G., Kubista M. J. Am. Chem. Soc. 2001, 123:803.
34. Köhler O., Jarikote D.V., Seitz O. Chem. Commun. 2004, 2674.
35. Jarikote D.V., Köhler O., Socher E., Seitz O. Eur. J. Org. Chem. 2005, 3187.
36. Marin V.L., Armitage B.A. Biochemistry 2006, 45:1745.
37. Serndl S., Wagenknecht H.-A. Angew. Chem. Int. Ed. 2009, 48:2418.
38. Ikeda S., Okamoto A. Chem. Asian J. 2008, 3:958.
39. Okamoto A. Chem. Soc. Rev. 2011, 40:5815.
40. Ikeda S., Kubota T., Kino K., Okamoto A. Bioconjug. Chem. 2008, 19:1719.
41. Ikeda S., Kubota T., Yuki M., Yanagisawa H., Tsuruma S., Okamoto A. Org. Biomol. Chem. 2010, 8:546.
42. Ikeda S., Kubota T., Yuki M., Okamoto A. Angew. Chem. Int. Ed. 2009, 48:6480.
43. Petersen M., Wengel J. Trends Biotechnol. 2003, 21:74.
44. Sugizaki K., Okamoto A. Bioconjug. Chem. 2010, 21:2276.
45. Majlessi M., Nelson N.C., Becker M.M. Nucleic Acids Res. 1998, 26:2224.
46. Kubota T., Ikeda S., Yanagisawa H., Yuki M., Okamoto A. Bioconjugate Chem. 2009, 20:1256.
47. Kasha M. Radiat. Res. 1963, 20:55.
48. McRae E.G., Kasha M. J. Chem. Phys. 1958, 28:721.
49. Levinson G.S., Simpson W.T., Curtis W. J. Am. Chem. Soc. 1957, 79:4314.
50. Forster T. Ann. Phys. 1948, 2:55.
51. Stryer L., Haugland R.P. Proc. Natl. Acad. Sci. U.S.A. 1967, 58:719.
52. Santangelo P.J., Nix B., Tsourkas A., Bao G. Nucleic Acids Res. 2004, 32:e57.
53. Okabe K., Harada Y., Zhang J., Tadakuma H., Tani T., Funatsu T. Nucleic Acids Res. 2011, 39:e20.
54. Ikeda S., Kubota T., Wang D.O., Yanagisawa H., Yuki M., Okamoto A. Org. Biomol. Chem. 2011, 9:6598.
55. Kubota T., Ikeda S., Yanagisawa H., Yuki M., Okamoto A. Bioconjug. Chem. 2011, 22:1625.
56. Berger C.L., Svensson E.C., Thomas D.D. Proc. Natl. Acad. Sci. U.S.A. 1989, 86:8753.
57. Mayer G., Heckel A. Angew. Chem. Int. Ed. 2006, 45:4900.
58. Adams S.R., Tsien R.Y. Annu. Rev. Physiol. 1993, 55:755.
59. Ikeda S., Kubota T., Wang D.O., Yanagisawa H., Umemoto T., Okamoto A. Chembiochem 2011, 12:2871.
60. Wang D.O., Matsuno H., Ikeda S., Nakamura A., Yanagisawa H., Hayashi Y., Okamoto A. RNA 2012, 18:166.
61. Lezhava A., Ishidao T., Ishizu Y., Naito K., Hanami T., Katayama A., Kogo Y., Soma T., Ikeda S., Murakami K., Nogawa C., Itoh M., Mitani Y., Harbers M., Okamoto A., Hayashizaki Y. Hum. Mutat. 2010, 31:208.
62. Kubota T., Ikeda S., Yanagisawa H., Yuki M., Okamoto A. PLoS One 2010, 5:e13003.
63. Okamoto A. Chem. Rec. 2010, 10:188.
64. Collins F.S., Lander E.S., Rogers J., Waterston R.H., Conso I.H.G.S. Nature 2004, 431:931.
65. Schmutz J., Wheeler J., Grimwood J., Dickson M., Yang D.J., Caoile C., Bajorek E., Black S., Chan Y.M., Denys M., Escobar J., Flowers D., Fotopulos D., Garcia C., Gomez M., Gonzales E., Haydu L., Lopez F., Ramirez L., Retterer J., Rodriguez A., Rogers S., Salazar A., Tsai M., Myers R.M. Nature 2004, 429:365.