Investigation and development of quantum dot-encoded microsphere bioconjugates for DNA detection by flow cytometry

Journal of Fluorescence

Volumn 22, Issue 2, 2012, Pages 685-697

  Thiollet, Sarah ^b   Higson, Séamus ^a   White, Nicola ^a   Morgan, Sarah L ^a  

^a CRANFIELD UNIVERSITY   (United Kingdom)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Bioconjugation; Flow cytometry; Quantum dot encoded microsphere; Suspension array technology

Indexed keywords

DNA; DNA SEQUENCES; FLOW CYTOMETRY; FLUORESCENCE; FLUORESCENCE SPECTROSCOPY; MICROSPHERES; NANOCRYSTALS; OPTICAL PROPERTIES; PROBES; SUSPENSIONS (FLUIDS);

BIO-CONJUGATION; EXPERIMENTAL CONDITIONS; EXPERIMENTAL PROCEDURE; FLUORESCENT MICRO SPHERES; MOLECULAR DIAGNOSTICS; NEW FLUORESCENT PROBES; STRUCTURAL AND OPTICAL PROPERTIES; SUSPENSION ARRAY TECHNOLOGIES;

SEMICONDUCTOR QUANTUM DOTS;

EID: 84862231928     PISSN: 10530509     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10895-011-1004-2     Document Type: Article

References (43)

1. Norris DJ, Efros AL, Rosen M, Bawendi M (1996) Size dependence of exciton fine structure in CdSe quantum dots. Phys Rev B 53:16347-16354
2. Chan WCM, Nie SM (1998) Quantum dot bio-conjugates for ultrasensitive non isotopic detection. Science 281:2016-2018
3. Liu T, Liu B, Zhang H, Wang Y (2005) The fluorescence bioassay platforms on quantum dots nanoparticles. J Fluoresc 15:729-733 (Pubitemid 41795597)
4. Medintz I, Uyeda H, Goldman E, Mattoussi H (2005) Quantum dot bioconjugates for imaging, labelling and sensing. Nat Mater 4:435-446 (Pubitemid 40774047)
5. Han M, Gao X, Su JZ, Nie S (2001) Quantum dot-tagged microbeads for multiplexed optical coding of biomolecules. Nat Biotechnol 19:613-635
6. Gao X, Nie S (2004) Quantum dot-encoded mesoporous beads with high brightness and uniformity: rapid readout using flow cytometry. Anal Chem 76:2406-2410 (Pubitemid 38496087)
7. Wang HQ, Huang ZL, Liu TC, Wang JH, Cao YC, Hua XF, Li XQ, Zhao YD (2007) A feasible and quantitative encoding method for microbeads with multicolor quantum dots. J Fluoresc 17:133-138
8. Salas VM, Edwards BS, Sklar LA (2008) Advances in multiple analyte profiling. Adv Clin Chem 45:47-45
9. Spiro A, Lowe M, Brown D (2000) A bead-based method for multiplexed identification and quantitation of DNA sequences using flow cytometry. Appl Environ Microbiol 66:4258-4265
10. Lowe M, Spiro A, Summers AO, Wireman J (2004) Multiplexed identification and quantification of analyte DNAs in environmental samples using microspheres and flow cytometry. Methods in biotechnology: environmental biology: methods and protocols Edited by Spencer JFT, Spencer ALR. Humana Press, 51-74
11. Xu H, Sha MY, Wong EY, Uphoff J, Xu Y, Treadway JA, Truong A, O'Brien E, Asquith S, Stubbins M, Spurr NK, Lai EH, Mahoney W (2003) Multiplexed SNP genotyping using the Qbead™ system: a quantum dot-encoded microsphere-based assay. Nucleic Acid Res 31(1-10):e43
12. Cao YC, Liu TC, Hua XF, Zhu XX, Wang HQ, Huang ZL, Zhao YD, Liu MX, Luo QM (2006) Quantum dot optical encoded polystyrene beads for DNA detection. J Biomed Opt 11:054025-1-7
13. Huo Q (2007) A perspective on bioconjugated nanoparticles and quantum dots. Colloids Surf B Biointerface 59:1-10 (Pubitemid 47016928)
14. Maier JS, Panza JL, Bootman M (2007) Nanocrystal clusters in combination with spectral imaging to improve sensitivity in antibody labeling applications of fluorescent nanocrystals. Prog Biomed Opt Imaging 8:64280-1-11
15. Guo X, Peng J, Yang J, Peng F, Yu H, Wang H (2009) Quantum dot-encoded beads for ultrasensitive detection. Recent Pat Nanotechnol 3:192-202
16. Wittebolle L, Verstuyft K, Verstraete W, Boon N (2006) Optimization of amino-carboxy coupling of oligonucleotides to beads used in liquid arrays. J Chem Tech Biotechnol 27:476-480 (Pubitemid 43336901)
17. Pannu KK, Joe ET, Iyer SB (2001) Performance evaluation of QuantiBRITE phycoerythrin beads. Cytometry 45:250-258
18. Clapp AR, Medintz IL, Mauro JM, Fisher BR, Bawendi MG, Mattoussi H (2004) Fluorescence resonance energy transfer between quantum dot donors and dye-labeled protein acceptors. JACS 126:301-310 (Pubitemid 38090370)
19. Agrawal A, Deo R, Wang GD, WangMD, Nie S (2008) Nanometerscale mapping and single-molecule detection with color-coded nanoparticle probes. Proc Natl Acad Sci USA 105:3298-3303 (Pubitemid 351723547)
20. http://www.bangslabs.com/products/bangs/guide.php, Polystyrene fluorescent microsphere, last visited May 2011
21. http://www.luminexcorp.com/prod/groups/./oligo-coupling-scalingrecom.pdf, Scaling up and scaling down oligonucleotides coupling reaction, p. 1-4, last visited May 2011
22. Wang L, Tan W (2006) Multicolor FRET silica nanoparticles by single wavelength excitation. Nano Lett 6:84-88 (Pubitemid 43166106)
23. Peterson AW, Heaton RJ, Georgiadis RM (2001) The effect of surface probe density on DNA hybridization. Nucleic Acids Res 29:5163-5168 (Pubitemid 34065435)
24. Pack SP, Kamisetty NK, Nonogawa M, Devarayapalli KC, Ohtani K, Yamada K, Yoshida Y, Kodaki T, Makino K (2007) Direct immobilization of DNA oligomers onto the amine-functionalized glass surface for DNA microarray fabrication through the activation-free reaction of oxanine. Nucleic Acid Res 35:e110
25. Son A, Dosev D, Nichkova M, Ma Z, Kennedy IM, Scow KM, Hristova KR (2007) Quantitative DNA hybridization in solution using magnetic/luminescent core-shell nanoparticles. Anal Biochem 370:186-194 (Pubitemid 47484318)
26. Raghavachari N, Bao YP, Li G, Xie X, Müller UR (2003) Reduction of autofluorescence on DNA microarrays and slide surfaces by treatment with sodium borohydride. Anal Biochem 312:101-105 (Pubitemid 36151119)
27. Men'shikova AY, Evseeva TG, Chekina NA, Ivanchev SS (2001) Synthesis of polymethyl methacrylate microspheres in the presence of dextran and its derivatives. Russ J Appl Chem 74:489-493 (Pubitemid 33744708)
28. Sheng W, Kim S, Lee J, Kim SW, Jensen K, Bawendi MG (2006) In-situ encapsulation of quantum dots into polymer microsphere. Langmuir 22:3782-3790 (Pubitemid 43672551)
29. Vijayalakshmi S, Madras G (2004) Effect of temperature on the ultrasonic degradation of polyacrylamide and poly (ethylene oxide). Polym Degrad Stab 84:341-344
30. Shim SE, Ghose S, Isayev AI (2002) Formation of bubbles during ultrasonic treatment of cured poly(dimethyl siloxane). Polymer 43:5535-5543
31. Caruso MM, Davis DA, Shen Q, Odom SA, Sottos NR, White SR, Moore JS (2009) Mechanically-induced chemical changes in polymeric materials. Chem Rev 109:5755-5798
32. Chan Y, Zimmer J, Stroh M, Steckel J, Jain R, Bawendi M (2004) Incorporation of luminescent nanocrystals into monodisperse core-shell silica microspheres. Adv Mater 16:2092-2097 (Pubitemid 40072899)
33. Yang DL, Kraght P, Pentoney CS, Pentoney SL Jr (2007) Analytical significance of encroachment in multiplexed beadbased flow cytometric assays. Anal Chem 79:3607-3614 (Pubitemid 46799055)
34. Resch-Genger U, Hoffmann K, Nietfeld W, Engel A, Neukammer J, Nitschke R, Ebert B, Macdonald R (2005) How to improve quality assurance in fluorometry: fluorescence-inherent sources of error and suited fluorescence standards. J Fluoresc 15:337-362 (Pubitemid 40963141)
35. Wu Y, Campos SK, Lopez GP, Ozbun MA, Sklar LA, Buranda T (2007) The development of quantum dot calibration beads and quantitative multicolor bioassays in flow cytometry and microscopy. Anal Biochem 364:180-192 (Pubitemid 46562473)
36. Tycko DH, Metz MH, Epstein EA, Grinbaum A (1985) Flowcytometric light scattering measurement of red blood cell volume and hemoglobin concentration. Appl Opt 24:1355-1365
37. Horejsh D, Martini F, Poccia F, Ippolito G, Di Caro A, Capobianchi M (2005) A molecular beacon, bead-based assay for the detection of nucleic acids by flow cytometry. Nucleic Acids Res 33:e13
38. Chen J, Iannone MA, Li MS, Taylor JD, Rivers P, Nelsen AJ, Slentz-Kesler KA, Roses A, Weiner MP (2000) A microspherebased assay for multiplexed single nucleotide polymorphism analysis using single base chain extension. Genome Res 10:549-557 (Pubitemid 30259430)
39. Dunbar SA, Jacobson JW (2000) Application of the luminex LabMAP in rapid screening for mutations in the cystic fibrosis transmembrane conductance regulator gene: a pilot study. Clin Chem 46:1498-1500
40. Armstrong B, Stewart M, Mazumder A (2000) Suspension arrays for high throughput, multiplexed single nucleotide polymorphism genotyping. Cytometry 40:102-108 (Pubitemid 30322372)
41. Werntges H, Steger G, Riesner D, Fritz HJ (1986) Mismatches in DNA double strands: thermodynamic parameters and their correlation to repair efficiencies. Nucleic Acid Res 14:3773-3790 (Pubitemid 16120509)
42. Thiollet S, Bessant C, Morgan LS (2011) Application of multiple response optimization design to quantum dot-encoded microsphere bioconjugates hybridization Assay. Anal Biochem 414:23-30
43. Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Bio 132:365-386