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Volumn 12, Issue 4, 2012, Pages 607-619

Investigating the ecology and evolution of cryptic marine nematode species through quantitative real-time PCR of the ribosomal ITS region

Author keywords

Absolute quantification; Cryptic species; Internal transcribed spacer; QPCR; Relative quantification

Indexed keywords

HELMINTH DNA; PRIMER DNA; RIBOSOME DNA; SPACER DNA;

EID: 84862214794     PISSN: 1755098X     EISSN: 17550998     Source Type: Journal    
DOI: 10.1111/j.1755-0998.2012.03128.x     Document Type: Article
Times cited : (22)

References (50)
  • 1
    • 43049101423 scopus 로고    scopus 로고
    • Detection and quantification of root-knot nematode (Meloidogyne javanica), lesion nematode (Pratylenchus zeae) and dagger nematode (Xiphinema elongatum) parasites of sugarcane using real-time PCR
    • Berry SD, Fargette M, Spaull VW, Morand S, Cadet P (2008) Detection and quantification of root-knot nematode (Meloidogyne javanica), lesion nematode (Pratylenchus zeae) and dagger nematode (Xiphinema elongatum) parasites of sugarcane using real-time PCR. Molecular and Cellular Probes, 22, 168-176.
    • (2008) Molecular and Cellular Probes , vol.22 , pp. 168-176
    • Berry, S.D.1    Fargette, M.2    Spaull, V.W.3    Morand, S.4    Cadet, P.5
  • 3
    • 14844366889 scopus 로고    scopus 로고
    • Cryptic speciation and host-race formation in a purportedly generalist tumbling flower beetle
    • Blair CP, Abrahamson WG, Jackman JA, Tyrrell L (2005) Cryptic speciation and host-race formation in a purportedly generalist tumbling flower beetle. Evolution, 59, 304-316.
    • (2005) Evolution , vol.59 , pp. 304-316
    • Blair, C.P.1    Abrahamson, W.G.2    Jackman, J.A.3    Tyrrell, L.4
  • 5
    • 0001670956 scopus 로고    scopus 로고
    • Functional diversity of nematodes
    • Bongers T, Bongers M (1998) Functional diversity of nematodes. Applied Soil Ecology, 10, 239-251.
    • (1998) Applied Soil Ecology , vol.10 , pp. 239-251
    • Bongers, T.1    Bongers, M.2
  • 6
    • 78650227394 scopus 로고    scopus 로고
    • Long-term stability of entomopathogenic nematode spatial patterns in soil as measured by sentinel insects and real-time PCR assays
    • Campos-Herrera R, Johnson EG, El-Borai FE et al. (2011) Long-term stability of entomopathogenic nematode spatial patterns in soil as measured by sentinel insects and real-time PCR assays. Annals of Applied Biology, 158, 55-68.
    • (2011) Annals of Applied Biology , vol.158 , pp. 55-68
    • Campos-Herrera, R.1    Johnson, E.G.2    El-Borai, F.E.3
  • 7
    • 18044373685 scopus 로고    scopus 로고
    • Role of meiofauna in estuarine soft-bottom habitats
    • Coull BC (1999) Role of meiofauna in estuarine soft-bottom habitats. Australian Journal of Ecology, 24, 327-343.
    • (1999) Australian Journal of Ecology , vol.24 , pp. 327-343
    • Coull, B.C.1
  • 8
    • 33748939919 scopus 로고    scopus 로고
    • Using quantitative PCR to determine the distribution of a semicryptic benthic diatom, Navicula phyllepta (Bacillariophyceae)
    • Creach V, Ernst A, Sabbe K et al. (2006) Using quantitative PCR to determine the distribution of a semicryptic benthic diatom, Navicula phyllepta (Bacillariophyceae). Journal of Phycology, 42, 1142-1154.
    • (2006) Journal of Phycology , vol.42 , pp. 1142-1154
    • Creach, V.1    Ernst, A.2    Sabbe, K.3
  • 9
    • 81555197145 scopus 로고    scopus 로고
    • Salinity effects on the coexistence of cryptic species: a case study on marine nematodes
    • De Meester N, Derycke S, Bonte D, Moens T (2011) Salinity effects on the coexistence of cryptic species: a case study on marine nematodes. Marine Biology, 158, 2717-2726.
    • (2011) Marine Biology , vol.158 , pp. 2717-2726
    • De Meester, N.1    Derycke, S.2    Bonte, D.3    Moens, T.4
  • 10
    • 3042739677 scopus 로고    scopus 로고
    • Top-down impact of bacterivorous nematodes on the bacterial community structure: a microcosm study
    • De Mesel I, Derycke S, Moens T et al. (2004) Top-down impact of bacterivorous nematodes on the bacterial community structure: a microcosm study. Environmental Microbiology, 6, 733-744.
    • (2004) Environmental Microbiology , vol.6 , pp. 733-744
    • De Mesel, I.1    Derycke, S.2    Moens, T.3
  • 11
    • 26944471664 scopus 로고    scopus 로고
    • Mitochondrial DNA variation and cryptic speciation within the free-living marine nematode Pellioditis marina
    • Derycke S, Remerie T, Vierstraete A et al. (2005) Mitochondrial DNA variation and cryptic speciation within the free-living marine nematode Pellioditis marina. Marine Ecology-Progress Series, 300, 91-103.
    • (2005) Marine Ecology-Progress Series , vol.300 , pp. 91-103
    • Derycke, S.1    Remerie, T.2    Vierstraete, A.3
  • 12
    • 33749629457 scopus 로고    scopus 로고
    • Seasonal dynamics of population genetic structure in cryptic taxa of the Pellioditis marina complex (Nematoda : Rhabditida)
    • Derycke S, Backeljau T, Vlaeminck C et al. (2006) Seasonal dynamics of population genetic structure in cryptic taxa of the Pellioditis marina complex (Nematoda : Rhabditida). Genetica, 128, 307-321.
    • (2006) Genetica , vol.128 , pp. 307-321
    • Derycke, S.1    Backeljau, T.2    Vlaeminck, C.3
  • 13
    • 34249099749 scopus 로고    scopus 로고
    • Spatiotemporal analysis of population genetic structure in Geomonhystera disjuncta (Nematoda, Monhysteridae) reveals high levels of molecular diversity
    • Derycke S, Backeljau T, Vlaeminck C et al. (2007) Spatiotemporal analysis of population genetic structure in Geomonhystera disjuncta (Nematoda, Monhysteridae) reveals high levels of molecular diversity. Marine Biology, 151, 1799-1812.
    • (2007) Marine Biology , vol.151 , pp. 1799-1812
    • Derycke, S.1    Backeljau, T.2    Vlaeminck, C.3
  • 14
    • 38549084109 scopus 로고    scopus 로고
    • Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morphological tools
    • Derycke S, Fonseca G, Vierstraete A et al. (2008a) Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morphological tools. Zoological journal of the Linnean Society, 152, 1-15.
    • (2008) Zoological journal of the Linnean Society , vol.152 , pp. 1-15
    • Derycke, S.1    Fonseca, G.2    Vierstraete, A.3
  • 15
    • 47749120554 scopus 로고    scopus 로고
    • Phylogeography of the Rhabditis (Pellioditis) marina species complex: evidence for long-distance dispersal, and for range expansions and restricted gene flow in the northeast Atlantic
    • Derycke S, Remerie T, Backeljau T et al. (2008b) Phylogeography of the Rhabditis (Pellioditis) marina species complex: evidence for long-distance dispersal, and for range expansions and restricted gene flow in the northeast Atlantic. Molecular Ecology, 17, 3306-3322.
    • (2008) Molecular Ecology , vol.17 , pp. 3306-3322
    • Derycke, S.1    Remerie, T.2    Backeljau, T.3
  • 16
    • 77953150857 scopus 로고    scopus 로고
    • Linking DNA sequences to morphology: cryptic diversity and population genetic structure in the marine nematode Thoracostoma trachygaster (Nematoda, Leptosomatidae)
    • Derycke S, De Ley P, De Ley IT et al. (2010) Linking DNA sequences to morphology: cryptic diversity and population genetic structure in the marine nematode Thoracostoma trachygaster (Nematoda, Leptosomatidae). Zoologica Scripta, 39, 276-289.
    • (2010) Zoologica Scripta , vol.39 , pp. 276-289
    • Derycke, S.1    De Ley, P.2    De Ley, I.T.3
  • 17
    • 77952428448 scopus 로고    scopus 로고
    • Development and environmental application of a genus-specific quantitative PCR approach for Pseudo-nitzschia species
    • Fitzpatrick E, Caron DA, Schnetzer A (2010) Development and environmental application of a genus-specific quantitative PCR approach for Pseudo-nitzschia species. Marine Biology 157, 1161-1169.
    • (2010) Marine Biology , vol.157 , pp. 1161-1169
    • Fitzpatrick, E.1    Caron, D.A.2    Schnetzer, A.3
  • 19
    • 35248872903 scopus 로고    scopus 로고
    • Satellite DNA as a target for TaqMan real-time PCR detection of the pinewood nematode, Bursaphelenchus xylophilus
    • Francois C, Castagnone C, Boonham N et al. (2007) Satellite DNA as a target for TaqMan real-time PCR detection of the pinewood nematode, Bursaphelenchus xylophilus. Molecular Plant Pathology, 8, 803-809.
    • (2007) Molecular Plant Pathology , vol.8 , pp. 803-809
    • Francois, C.1    Castagnone, C.2    Boonham, N.3
  • 20
    • 66249131524 scopus 로고    scopus 로고
    • Marine chemical ecology: chemical signals and cues structure marine populations, communities, and ecosystems
    • Hay ME (2009) Marine chemical ecology: chemical signals and cues structure marine populations, communities, and ecosystems. Annual Review of Marine Science, 1, 193-212.
    • (2009) Annual Review of Marine Science , vol.1 , pp. 193-212
    • Hay, M.E.1
  • 22
    • 70449380230 scopus 로고    scopus 로고
    • Biodiversity in a complex world: consolidation and progress in functional biodiversity research
    • Hillebrand H, Matthiessen B (2009) Biodiversity in a complex world: consolidation and progress in functional biodiversity research. Ecology Letters, 12, 1405-1419.
    • (2009) Ecology Letters , vol.12 , pp. 1405-1419
    • Hillebrand, H.1    Matthiessen, B.2
  • 23
    • 36849008634 scopus 로고    scopus 로고
    • A ribosomal DNA-based framework for the detection and quantification of stress-sensitive nematode families in terrestrial habitats
    • Holterman M, Rybarczyk K, Van den Elsen S et al. (2008) A ribosomal DNA-based framework for the detection and quantification of stress-sensitive nematode families in terrestrial habitats. Molecular Ecology Resources, 8, 23-34.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 23-34
    • Holterman, M.1    Rybarczyk, K.2    Van den Elsen, S.3
  • 24
    • 0037684804 scopus 로고    scopus 로고
    • Embryonic cell lineage of the marine nematode Pellioditis marina
    • Houthoofd W, Jacobsen K, Mertens C et al. (2003) Embryonic cell lineage of the marine nematode Pellioditis marina. Developmental Biology, 258, 57-69.
    • (2003) Developmental Biology , vol.258 , pp. 57-69
    • Houthoofd, W.1    Jacobsen, K.2    Mertens, C.3
  • 25
    • 77950021662 scopus 로고    scopus 로고
    • Detection of the pine wood nematode using a real-time PCR assay to target the DNA topoisomerase I gene
    • Huang L, Ye JR, Wu XQ et al. (2010) Detection of the pine wood nematode using a real-time PCR assay to target the DNA topoisomerase I gene. European Journal of Plant Pathology, 127, 89-98.
    • (2010) European Journal of Plant Pathology , vol.127 , pp. 89-98
    • Huang, L.1    Ye, J.R.2    Wu, X.Q.3
  • 27
    • 71949129650 scopus 로고    scopus 로고
    • Where's the ecology in molecular ecology?
    • Johnson JB, Peat SM, Adams BJ (2009) Where's the ecology in molecular ecology? Oikos, 118, 1601-1609.
    • (2009) Oikos , vol.118 , pp. 1601-1609
    • Johnson, J.B.1    Peat, S.M.2    Adams, B.J.3
  • 29
    • 0034652521 scopus 로고    scopus 로고
    • Molecular genetic analyses of species boundaries in the sea
    • Knowlton N (2000) Molecular genetic analyses of species boundaries in the sea. Hydrobiologia, 420, 73-90.
    • (2000) Hydrobiologia , vol.420 , pp. 73-90
    • Knowlton, N.1
  • 30
    • 67149142923 scopus 로고    scopus 로고
    • Description of Oncholaimus moanae sp nov (Nematoda: Oncholaimidae), with notes on feeding ecology based on isotopic and fatty acid composition
    • Leduc D (2009) Description of Oncholaimus moanae sp nov (Nematoda: Oncholaimidae), with notes on feeding ecology based on isotopic and fatty acid composition. Journal of the Marine Biological Association of the United Kingdom, 89, 337-344.
    • (2009) Journal of the Marine Biological Association of the United Kingdom , vol.89 , pp. 337-344
    • Leduc, D.1
  • 31
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method. Methods, 25, 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 33
    • 2542523843 scopus 로고    scopus 로고
    • ARB: a software environment for sequence data
    • Ludwig W, Strunk O, Westram R et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Research, 32, 1363-1371.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1363-1371
    • Ludwig, W.1    Strunk, O.2    Westram, R.3
  • 34
    • 33751239117 scopus 로고    scopus 로고
    • Quantification of the slug parasitic nematode Phasmarhabditis hermaphrodita from soil samples using real time qPCR
    • MacMillan K, Blok V, Young I, Crawford J, Wilson MJ (2006) Quantification of the slug parasitic nematode Phasmarhabditis hermaphrodita from soil samples using real time qPCR. International Journal for Parasitology, 36, 1453-1461.
    • (2006) International Journal for Parasitology , vol.36 , pp. 1453-1461
    • MacMillan, K.1    Blok, V.2    Young, I.3    Crawford, J.4    Wilson, M.J.5
  • 35
    • 0032460831 scopus 로고    scopus 로고
    • On the cultivation of free-living marine and estuarine nematodes
    • Moens T, Vincx M (1998) On the cultivation of free-living marine and estuarine nematodes. Helgolander Meeresuntersuchungen, 52, 115-139.
    • (1998) Helgolander Meeresuntersuchungen , vol.52 , pp. 115-139
    • Moens, T.1    Vincx, M.2
  • 37
    • 44849131145 scopus 로고    scopus 로고
    • Unravelling below-ground plant distributions: a real-time polymerase chain reaction method for quantifying species proportions in mixed root samples
    • Mommer L, Wagemaker CAM, De Kroon H, Ouborg NJ (2008) Unravelling below-ground plant distributions: a real-time polymerase chain reaction method for quantifying species proportions in mixed root samples. Molecular Ecology Resources, 8, 947-953.
    • (2008) Molecular Ecology Resources , vol.8 , pp. 947-953
    • Mommer, L.1    Wagemaker, C.A.M.2    De Kroon, H.3    Ouborg, N.J.4
  • 38
    • 77955634443 scopus 로고    scopus 로고
    • Multiplex real-time PCR assays for the identification of the potato cyst and tobacco cyst nematodes
    • Nakhla MK, Owens KJ, Li WB et al. (2010) Multiplex real-time PCR assays for the identification of the potato cyst and tobacco cyst nematodes. Plant Disease, 94, 959-965.
    • (2010) Plant Disease , vol.94 , pp. 959-965
    • Nakhla, M.K.1    Owens, K.J.2    Li, W.B.3
  • 39
    • 0028164409 scopus 로고
    • Genetic divergence, reproductive isolation, and marine speciation
    • Palumbi SR (1994) Genetic divergence, reproductive isolation, and marine speciation. Annual Review of Ecology and Systematics, 25, 547-572.
    • (1994) Annual Review of Ecology and Systematics , vol.25 , pp. 547-572
    • Palumbi, S.R.1
  • 40
    • 33845546929 scopus 로고    scopus 로고
    • A real-time PCR method for quantifying viable Ascaris eggs using the first internally transcribed spacer region of ribosomal DNA
    • Pecson BM, Barrios JA, Johnson DR, Nelson KL (2006) A real-time PCR method for quantifying viable Ascaris eggs using the first internally transcribed spacer region of ribosomal DNA. Applied and Environmental Microbiology, 72, 7864-7872.
    • (2006) Applied and Environmental Microbiology , vol.72 , pp. 7864-7872
    • Pecson, B.M.1    Barrios, J.A.2    Johnson, D.R.3    Nelson, K.L.4
  • 41
    • 60449097493 scopus 로고    scopus 로고
    • Interactions among bacterial-feeding nematode species at different levels of food availability
    • dos Santos GAP, Derycke S, Genevois VGF et al. (2009) Interactions among bacterial-feeding nematode species at different levels of food availability. Marine Biology, 156, 629-640.
    • (2009) Marine Biology , vol.156 , pp. 629-640
    • dos Santos, G.A.P.1    Derycke, S.2    Genevois, V.G.F.3
  • 42
    • 70349675827 scopus 로고    scopus 로고
    • Detection of the root-lesion nematode, Partylenchus penetrans (Cobb), in a nematode community using real-time PCR
    • Sato E, Min YY, Shirakashi T, Wada S, Toyota K (2007) Detection of the root-lesion nematode, Partylenchus penetrans (Cobb), in a nematode community using real-time PCR. Japanese Journal of Nematology, 37, 87-92.
    • (2007) Japanese Journal of Nematology , vol.37 , pp. 87-92
    • Sato, E.1    Min, Y.Y.2    Shirakashi, T.3    Wada, S.4    Toyota, K.5
  • 43
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative C-T method
    • Schmittgen TD, Livak KJ (2008) Analyzing real-time PCR data by the comparative C-T method. Nature Protocols, 3, 1101-1108.
    • (2008) Nature Protocols , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 44
    • 51249162520 scopus 로고
    • Evolution of a crustacean chemical communication channel-Behavioral and ecological genetic evidence for a habitat-modified, race-specific pheromone
    • Stanhope MJ, Connelly MM, Hartwick B (1992) Evolution of a crustacean chemical communication channel-Behavioral and ecological genetic evidence for a habitat-modified, race-specific pheromone. Journal of Chemical Ecology, 18, 1871-1887.
    • (1992) Journal of Chemical Ecology , vol.18 , pp. 1871-1887
    • Stanhope, M.J.1    Connelly, M.M.2    Hartwick, B.3
  • 45
    • 84862180840 scopus 로고    scopus 로고
    • STATISTICA (Data analysis software system), version 7. .
    • Statsoft I (2004) STATISTICA (Data analysis software system), version 7. .
    • (2004)
    • Statsoft, I.1
  • 46
    • 33748638817 scopus 로고    scopus 로고
    • High level of cryptic species diversity revealed by sympatric lineages of Southeast Asian forest frogs
    • Stuart BL, Inger RF, Voris HK (2006) High level of cryptic species diversity revealed by sympatric lineages of Southeast Asian forest frogs. Biology Letters, 2, 470-474.
    • (2006) Biology Letters , vol.2 , pp. 470-474
    • Stuart, B.L.1    Inger, R.F.2    Voris, H.K.3
  • 47
    • 0017618537 scopus 로고
    • Post-embryonic cell lineages of the nematode Caenorhabditis elegans
    • Sulston JE, Horvitz HR (1977) Post-embryonic cell lineages of the nematode Caenorhabditis elegans. Developmental Biology, 56, 110-156.
    • (1977) Developmental Biology , vol.56 , pp. 110-156
    • Sulston, J.E.1    Horvitz, H.R.2
  • 49
    • 38049089740 scopus 로고    scopus 로고
    • Development of a real-time PCR method for the potato-cyst nematode Globodera rostochiensis and the root-knot nematode Meloidogyne incognita
    • Toyota K, Shirakashi T, Sato E, Wada S, Min YY (2008) Development of a real-time PCR method for the potato-cyst nematode Globodera rostochiensis and the root-knot nematode Meloidogyne incognita. Soil Science and Plant Nutrition, 54, 72-76.
    • (2008) Soil Science and Plant Nutrition , vol.54 , pp. 72-76
    • Toyota, K.1    Shirakashi, T.2    Sato, E.3    Wada, S.4    Min, Y.Y.5
  • 50
    • 0038368776 scopus 로고    scopus 로고
    • Nematodes as soil indicators: functional and biodiversity aspects
    • Yeates GW (2003) Nematodes as soil indicators: functional and biodiversity aspects. Biology and Fertility of Soils, 37, 199-210.
    • (2003) Biology and Fertility of Soils , vol.37 , pp. 199-210
    • Yeates, G.W.1


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