Phylogeography of the Rhabditis (Pellioditis) marina species complex: Evidence for long-distance dispersal, and for range expansions and restricted gene flow in the northeast Atlantic

Molecular Ecology

Volumn 17, Issue 14, 2008, Pages 3306-3322

  Derycke, S ^a   Remerie, T ^a   Backeljau, T ^b,c   Vierstraete, A ^a   Vanfleteren, J ^a   Vincx, M ^a   Moens, T ^a  

^a GHENT UNIVERSITY   (Belgium)

^b ROYAL BELGIAN INSTITUTE OF NATURAL SCIENCES   (Belgium)

^c UNIVERSITY OF ANTWERP   (Belgium)

Author keywords

Cosmopolitanism; Cryptic species; Dispersal; Nematode; Phylogeography; R. (P.) marina

Indexed keywords

ANIMAL; ARTICLE; ATLANTIC OCEAN; CLASSIFICATION; GENE FLOW; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; NEMATODE; PHYLOGENY; POPULATION GENETICS; SPECIES DIFFERENCE;

ANIMALS; ATLANTIC OCEAN; GENE FLOW; GENETICS, POPULATION; GEOGRAPHY; PHYLOGENY; RHABDITOIDEA; SPECIES SPECIFICITY; VARIATION (GENETICS);

NEMATODA; RHABDITIS MARINA;

EID: 47749120554     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2008.03846.x     Document Type: Article

References (70)

1. Avise JC (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
2. Barber PH, Palumbi SR, Erdmann MV, Moosa MK (2000) A marine Wallace's line. Nature, 406, 692 693.
3. Barraclough TG, Vogler AP (2000) Detecting the geographical pattern of speciation from species-level phylogenies. American Naturalist, 155, 419 434.
4. Bekkevold D, André C, Dahlgren TG et al 2005) Environmental correlates of population differentiation in Atlantic herring. Evolution, 59, 2656 2668.
5. Bhadury P, Austen MC, Bilton DT, Lambshead PJD, Rogers AD, Smerdon GR (2008) Evaluation of combined morphological and molecular techniques for marine nematode (Tershcellingia spp.) identification. Marine Biology, 154, 509 518.
6. Chevolot M, Hoarau G, Rijnsdorp AD, Stam WT, Olsen JL (2006) Phylogeography and population structure of thornback rays (Raja clavata L., Rajidae). Molecular Ecology, 15, 3693 3705.
7. Clement M, Posada D, Crandall KA (2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
8. Coomans A (2000) Nematode systematics: past, present and future. Nematology, 2, 3 7.
9. Coomans A (2002) Present status and future of nematode systematics. Nematology, 4, 573 582.
10. Cowen RK, Paris CB, Srinivasan A (2006) Scaling of connectivity in marine populations. Science, 311, 522 527.
11. Coyer JA, Peters AF, Stam WT, Olsen JL (2003) Post-ice age colonization and differentiation of Fucus serratus L. (Phaeophyceae; Fucaceae) populations in Northern Europe. Molecular Ecology, 12, 1817 1829.
12. Crandall KA, Templeton AR (1993) Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics, 134, 959 969.
13. Darling KF, Wade CM, Stewart IA, Kroon D, Dingle R, Brown AJL (2000) Molecular evidence for genetic mixing of Arctic and Antartic subpolar populations of planktonic foraminifers. Nature, 405, 43 47.
14. Dawson MN, Louie KD, Barlow M, Jacobs DK, Swift CC (2002) Comparative phylogeography of sympatric sisterspecies, Clevelandia ios and Eucyclogobius newberryi (Teleostei, Gobiidae), across the California Transition Zone. Molecular Ecology, 11, 1065 1075.
15. De Meester L, Gómez A, Okamura B, Schwenk K (2002) The Monopolization Hypothesis and the dispersal-gene flow paradox in aquatic organisms. Acta Oecologia, 23, 121 135.
16. De Mesel I, Derycke S, Moens T, Van der Gucht K, Vincx M, Swings J (2004) Top-down impact of bacterivorous nematodes on the bacterial community structure: a microcosm study. Environmental Microbiology, 6, 733 744.
17. Derycke S, Remerie T, Vierstraete A et al 2005) Mitochondrial DNA variation and cryptic speciation within the free-living marine nematode Pellioditis marina. Marine Ecology Progress Series, 300, 91 103.
18. Derycke S, Backeljau T, Vlaeminck C et al 2006) Seasonal dynamics of population genetic structure in cryptic taxa of the Pellioditis marina complex (Nematoda: Rhabditida). Genetica, 128, 307 321.
19. Derycke S, Backeljau T, Vlaeminck C et al 2007a) Spatiotemporal analysis of population genetic structure in Geomonhystera disjuncta (Nematoda, Monhysteridae) reveals high levels of molecular diversity. Marine Biology, 151, 1799 1812.
20. Derycke S, Van Vynckt R, Vanoverbeke J, Vincx M, Moens T (2007b) Colonization patterns of Nematoda on decomposing algae in the estuarine environment: community assembly and genetic structure of the dominant species Pellioditis marina. Limnology and Oceanography, 52, 992 1001.
21. Derycke S, Fonseca G, Vierstraete A, Vanfleteren J, Vincx M, Moens T (2008) Disentangling taxonomy within the Rhabditis (Pellioditis) marina (Nematoda, Rhabditidae) species complex using molecular and morphological tools. Zoological Journal of the Linnean Society, 152, 1 15.
22. Dupanloup I, Schneider S, Excoffier L (2002) A simulated annealing approach to define the genetic structure of populations. Molecular Ecology, 11, 2571 2581.
23. Fegley S (1987) Experimental variation of near-bottom current speeds and its effects on depth distribution of sand-living meiofauna. Marine Biology, 95, 183 191.
24. Finlay BJ, Esteban GF, Brown S, Fenchel T, Hoef-Emden K (2006) Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies. Protist, 157, 377 390.
25. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915 925.
26. Garcia-Marin JL, Utter FM, Pla C (1999) Postglacial colonization of brown trout in Europe based on distribution of allozyme variants. Heredity, 82, 46 56.
27. Gómez A, Hughes RN, Wright PJ, Carvalho GR, Lunt DH (2007) Mitochondrial DNA phylogeography and mating compatibility reveal marked genetic structuring and speciation in the NE Atlantic bryozoan Celleporella hyalina. Molecular Ecology, 16, 2173 2188.
28. Gysels ES, Hellemans B, Pampoulie C, Volckaert FAM (2004) Phylogeography of the common goby, Pomatoschistus microps, with particular emphasis on the colonization of the Mediterranean and the North Sea. Molecular Ecology, 13, 403 417.
29. Heip C, Vincx M, Vranken G (1985) The ecology of marine nematodes. Oceanography and Marine Biology Annual Review, 23, 399 489.
30. Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907 913.
31. Hoarau G, Coyer JA, Veldsink JH, Stam WT, Olsen JL (2007) Glacial refugia and recolonization pathways in the brown seaweed Fucus serratus. Molecular Ecology, 16, 3606 3616.
32. Huelsenbeck JP, Ronquist F (2005) mrbayes v 3.1.2, Bayesian Analysis of Phylogeny. University of California, San Diego, California and Florida State University, Tallahassee, Florida.
33. Huisman J, Wiessing FJ (1999) Biodiversity of plankton by species oscillations and chaos. Nature, 402, 407 411.
34. Jolly MT, Jollivet D, Gentil F, Thiébout E, Viard F (2005) Sharp genetic break between Atlantic and English Channel populations of the polychaete Pectinaria koreni, along the North coast of France. Heredity, 94, 23 32.
35. Knowlton N (2000) Molecular genetic analysis of species boundaries in the sea. Hydrobiologia, 420, 73 90.
36. Kumar S, Tamura K, Nei M (2004) mega 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150 163.
37. Lambshead PJD, Boucher G (2003) Marine nematode deep-sea biodiversity - hyperdiverse or hype? Journal of Biogeography, 30, 475 485.
38. Löytynoja A, Milinkovitch MC (2001) SOAP, cleaning multiple alignments from unstable blocks. Bioinformatics, 17, 573 574.
39. Moens T, Vincx M (2000) Temperature and salinity constraints on the life cycle of two brackish-water nematode species. Journal of Experimental Marine Biology and Ecology, 243, 115 135.
40. Nadler SA (2002) Species delimitation and nematode biodiversity: phylogenies rule. Nematology, 4, 615 625.
41. Nieberding C, Libois R, Douady CJ, Morand S, Michaux JR (2005) Phylogeography of a nematode (Heligmosomoides polygyrus) in the western Palearctic region: persistence of northern cryptic populations during ice ages? Molecular Ecology, 14, 765 779.
42. Nielsen EE, Hansen MM, Ruzzante DE, Meldrup D, Grønkjær P (2003) Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea revealed by individual admixture analysis. Molecular Ecology, 12, 1497 1508.
43. Nielsen EE, Nielsen PH, Meldrup D, Hansen MM (2004) Genetic population structure of turbot (Scophthalmus maximus L.) supports the presence of multiple hybrid zones for marine fishes in the transition zone between the Baltic Sea and the North Sea. Molecular Ecology, 13, 585 595.
44. Palumbi SR (1994) Genetic divergence, reproductive isolation, and marine speciation. Annual Review of Ecology and Systematics, 25, 547 572.
45. Perrin C, Wing SR, Roy MS (2004) Effects of hydrographic barriers on population genetic structure of the sea star Coscinasterias muricata (Echinodermata, Asteroidea) in the New Zealand fiords. Molecular Ecology, 13, 2183 2195.
46. Plantard O, Porte C (2004) Population genetic structure of the sugar beet cyst nematode Heterodera schachtii: a gonochoristic and amphimictic species with highly inbred but weakly differentiated populations. Molecular Ecology, 13, 33 41.
47. Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
48. Provan J, Wattier RA, Maggs CA (2005) Phylogeographic analysis of the red seaweed Palmaria palmata reveals a Pleistocene marine glacial refugium in the English Channel. Molecular Ecology, 14, 793 803.
49. Pybus OG, Rambaut A (2002) genie: estimating demographic history from molecular phylogenies. Bioinformatics, 18, 1404 1405.
50. Remerie T, Gysels E, Vierstraete A, Vanfleteren J, Vanreusel A (2006) Evidence of genetic differentiation of the brackish water mysid Neomysis integer (Crustacea, Mysida) concordant with Pleistocene glaciations. Vie et Milieu, 56, 15 22.
51. Ribera I, Vogler AP (2004) Speciation of Iberian diving beetles in Pleistocene refugia (Coleoptera, Dytiscidae). Molecular Ecology, 13, 179 193.
52. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552 569.
53. Rogers AR, Fraley AE, Barnshead MJ, Watkins WS, Jorde LB (1996) Mitochondrial mismatch analysis is insensitive to the mutational process. Molecular Biology and Evolution, 13, 895 902.
54. Schneider S, Roessli D, Excoffier L (2000) arlequin ver. 2.000: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva, Switzerland.
55. Scott GH, Kennett JP, Wilson KJ, Hayward BW (2007) Globorotalia puncticulata: population divergence, dispersal and extinction related to Pliocene-Quaternary water masses. Marine Micropaleontology, 62, 235 253.
56. Strimmer K, Pybus OG (2001) Exploring the demographic history of DNA sequences using the generalized skyline plot. Molecular Biology and Evolution, 18, 2298 2305.
57. Suatoni E, Vicario S, Rice S, Snell T, Caccone A (2006) An analysis of species boundaries and biogeographic patterns in a cryptic species complex: The rotifer Brachionus plicatilis. Molecular Phylogenetics and Evolution, 41, 86 98.
58. Sudhaus W, Nimrich M (1989) Rhabditid nematodes from seaweed deposits in Canada with a description of Rhabditis (Pellioditis) littorea n.sp. Canadian Journal of Zoology, 67, 1347 1352.
59. Swofford DL (1998) paup*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer & Associates, Sunderland, Massachusetts.
60. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453 464.
61. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585 589.
62. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution, 10, 512 526.
63. Taylor MS, Hellberg ME (2003) Genetic evidence for local retention of pelagic larvae in a Caribbean reef fish. Science, 299, 107 109.
64. Taylor MS, Hellberg ME (2005) Marine radiations at small geographic scales: speciation in neotropical reef gobies (Elacatinus). Evolution, 59, 374 385.
65. Thiel M, Gutow L (2005) The ecology of rafting in the marine environment. II. The rafting organisms and community. Oceanography and Marine Biology Annual Review, 43, 279 418.
66. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876 4882.
67. Turgeon J, Stoks R, Thum RA, Brown JM, McPeek MA (2005) Simultaneous Quaternary radiations of three damselfly clades across the Holarctic. American Naturalist, 165, E78 E107.
68. m, with Rhabditis marina Bastian 1865 (Nematoda). Nematologica, 29, 468 477.
69. Wares JP, Cunningham CW (2001) Phylogeography and historical ecology of the North Atlantic intertidal. Evolution, 55, 2455 2469.
70. Wilke T, Pfenninger M (2002) Separating historic events from recurrent processes in cryptic species: phylogeography of mud snails (Hydrobia spp.). Molecular Ecology, 11, 1439 1451.