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Volumn 40, Issue 11, 2012, Pages

Comparison of microfluidic digital PCR and conventional quantitative PCR for measuring copy number variation

Author keywords

[No Author keywords available]

Indexed keywords

DNA; EPIDERMAL GROWTH FACTOR RECEPTOR 2;

EID: 84862205836     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks203     Document Type: Article
Times cited : (378)

References (49)
  • 1
    • 73849132248 scopus 로고    scopus 로고
    • Copy number variations and cancer susceptibility
    • Shlien, A. and Malkin, D. (2010) Copy number variations and cancer susceptibility. Curr. Opin. Oncol., 22, 55-63.
    • (2010) Curr. Opin. Oncol. , vol.22 , pp. 55-63
    • Shlien, A.1    Malkin, D.2
  • 2
    • 67650735159 scopus 로고    scopus 로고
    • Genomic copy number variation, human health, and disease
    • Wain, L.V., Armour, J.A. and Tobin, M.D. (2009) Genomic copy number variation, human health, and disease. Lancet, 374, 340-350.
    • (2009) Lancet , vol.374 , pp. 340-350
    • Wain, L.V.1    Armour, J.A.2    Tobin, M.D.3
  • 3
    • 34347353237 scopus 로고    scopus 로고
    • Copy-number variation and association studies of human disease
    • DOI 10.1038/ng2080, PII NG2080
    • McCarroll, S.A. and Altshuler, D.M. (2007) Copy-number variation and association studies of human disease. Nat. Genet., 39, S37-S42. (Pubitemid 47014474)
    • (2007) Nature Genetics , vol.39 , Issue.SUPPL. 1
    • McCarroll, S.A.1    Altshuler, D.M.2
  • 4
    • 0031034106 scopus 로고    scopus 로고
    • HER-2/neu signal transduction in human breast and ovarian cancer
    • Reese, D.M. and Slamon, D.J. (1997) HER-2/neu signal transduction in human breast and ovarian cancer. Stem Cells, 15, 1-8. (Pubitemid 27057075)
    • (1997) Stem Cells , vol.15 , Issue.1 , pp. 1-8
    • Reese, D.M.1    Slamon, D.J.2
  • 5
    • 37049183697 scopus 로고
    • Human breast cancer: Correlation of relapse and survival with amplification of the HER-2/neu oncogene
    • Slamon, D.J., Clark, G.M., Wong, S.G., Levin, W.J., Ullrich, A. and McGuire, W.L. (1987) Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene. Science, 235, 177-182. (Pubitemid 17231334)
    • (1987) Science , vol.235 , Issue.4785 , pp. 177-182
    • Slamon, D.J.1    Clark, G.M.2    Wong, S.G.3
  • 6
    • 76249088426 scopus 로고    scopus 로고
    • Copy number variations and cancer
    • Shlien, A. and Malkin, D. (2009) Copy number variations and cancer. Genome Med., 1, 62.
    • (2009) Genome Med. , vol.1 , pp. 62
    • Shlien, A.1    Malkin, D.2
  • 7
    • 57149102071 scopus 로고    scopus 로고
    • Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis
    • Ionita-Laza, I., Rogers, A.J., Lange, C., Raby, B.A. and Lee, C. (2009) Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis. Genomics, 93, 22-26.
    • (2009) Genomics , vol.93 , pp. 22-26
    • Ionita-Laza, I.1    Rogers, A.J.2    Lange, C.3    Raby, B.A.4    Lee, C.5
  • 8
    • 34347361618 scopus 로고    scopus 로고
    • Copy number variations and clinical cytogenetic diagnosis of constitutional disorders
    • DOI 10.1038/ng2092, PII NG2092
    • Lee, C., Iafrate, A.J. and Brothman, A.R. (2007) Copy number variations and clinical cytogenetic diagnosis of constitutional disorders. Nat. Genet., 39, S48-S54. (Pubitemid 47014476)
    • (2007) Nature Genetics , vol.39 , Issue.SUPPL. 1
    • Lee, C.1    Iafrate, A.J.2    Brothman, A.R.3
  • 9
    • 64849083125 scopus 로고    scopus 로고
    • CNV-seq, a new method to detect copy number variation using high-throughput sequencing
    • Xie, C. and Tammi, M.T. (2009) CNV-seq, a new method to detect copy number variation using high-throughput sequencing. BMC Bioinform., 10, 80.
    • (2009) BMC Bioinform. , vol.10 , pp. 80
    • Xie, C.1    Tammi, M.T.2
  • 11
    • 0035057567 scopus 로고    scopus 로고
    • Determination of RhD zygosity: Comparison of a double amplification refractory mutation system approach and a multiplex real-time quantitative PCR approach
    • Chiu, R.W., Murphy, M.F., Fidler, C., Zee, B.C., Wainscoat, J.S. and Lo, Y.M. (2001) Determination of RhD zygosity: comparison of a double amplification refractory mutation system approach and a multiplex real-time quantitative PCR approach. Clin. Chem., 47, 667-672. (Pubitemid 32275809)
    • (2001) Clinical Chemistry , vol.47 , Issue.4 , pp. 667-672
    • Chiu, R.W.K.1    Murphy, M.F.2    Fidler, C.3    Zee, B.C.Y.4    Wainscoat, J.S.5    Lo, Y.M.D.6
  • 12
    • 0036151029 scopus 로고    scopus 로고
    • Novel real-time quantitative PCR test for trisomy 21
    • Zimmermann, B., Holzgreve, W., Wenzel, F. and Hahn, S. (2002) Novel real-time quantitative PCR test for trisomy 21. Clin. Chem., 48, 362-363. (Pubitemid 34107277)
    • (2002) Clinical Chemistry , vol.48 , Issue.2 , pp. 362-363
    • Zimmermann, B.1    Holzgreve, W.2    Wenzel, F.3    Hahn, S.4
  • 13
    • 0017360626 scopus 로고
    • Free DNA in the serum of cancer patients and the effect of therapy
    • Leon, S.A., Shapiro, B., Sklaroff, D.M. and Yaros, M.J. (1977) Free DNA in the serum of cancer patients and the effect of therapy. Cancer Res., 37, 646-650. (Pubitemid 8051621)
    • (1977) Cancer Research , vol.37 , Issue.3 , pp. 646-650
    • Leon, S.A.1    Shapiro, B.2    Sklaroff, D.M.3    Yaros, M.J.4
  • 14
    • 0023211986 scopus 로고
    • Isolation and characterization of DNA from the plasma of cancer patients
    • DOI 10.1016/0277-5379(87)90266-5
    • Stroun, M., Anker, P., Lyautey, J., Lederrey, C. and Maurice, P.A. (1987) Isolation and characterization of DNA from the plasma of cancer patients. Eur. J. Cancer Clin. Oncol., 23, 707-712. (Pubitemid 17119706)
    • (1987) European Journal of Cancer and Clinical Oncology , vol.23 , Issue.6 , pp. 707-712
    • Stroun, M.1    Anker, P.2    Lyautey, J.3
  • 15
    • 69949138533 scopus 로고    scopus 로고
    • Noninvasive prenatal diagnosis of fetal aneuploidies and Mendelian disorders: New innovative strategies
    • Hahn, S., Jackson, L.G., Kolla, V., Mahyuddin, A.P. and Choolani, M. (2009) Noninvasive prenatal diagnosis of fetal aneuploidies and Mendelian disorders: new innovative strategies. Expert Rev. Mol. Diagn., 9, 613-621.
    • (2009) Expert Rev. Mol. Diagn. , vol.9 , pp. 613-621
    • Hahn, S.1    Jackson, L.G.2    Kolla, V.3    Mahyuddin, A.P.4    Choolani, M.5
  • 16
    • 34247194882 scopus 로고    scopus 로고
    • Biomarkers for early detection of breast cancer: What, when, and where?
    • DOI 10.1016/j.bbagen.2007.01.017, PII S0304416507000402
    • Levenson, V.V. (2007) Biomarkers for early detection of breast cancer: what, when, and where? Biochim. Biophys. Acta, 1770, 847-856. (Pubitemid 46617032)
    • (2007) Biochimica et Biophysica Acta - General Subjects , vol.1770 , Issue.6 , pp. 847-856
    • Levenson, V.V.1
  • 17
    • 33845476677 scopus 로고    scopus 로고
    • Circulating nucleic acids (CNAs) and cancer-A survey
    • DOI 10.1016/j.bbcan.2006.10.001, PII S0304419X0600059X
    • Fleischhacker, M. and Schmidt, B. (2007) Circulating nucleic acids (CNAs) and cancer: a survey. Biochim. Biophys. Acta, 1775, 181-232. (Pubitemid 44911084)
    • (2007) Biochimica et Biophysica Acta - Reviews on Cancer , vol.1775 , Issue.1 , pp. 181-232
    • Fleischhacker, M.1    Schmidt, B.2
  • 18
    • 77956467360 scopus 로고    scopus 로고
    • Cell-free DNA in the blood as a solid tumor biomarker - A critical appraisal of the literature
    • Jung, K., Fleischhacker, M. and Rabien, A. (2010) Cell-free DNA in the blood as a solid tumor biomarker-a critical appraisal of the literature. Clin. Chim. Acta, 411, 1611-1624.
    • (2010) Clin. Chim. Acta , vol.411 , pp. 1611-1624
    • Jung, K.1    Fleischhacker, M.2    Rabien, A.3
  • 20
    • 54549127378 scopus 로고    scopus 로고
    • Studying copy number variations using a nanofluidic platform
    • Qin, J., Jones, R.C. and Ramakrishnan, R. (2008) Studying copy number variations using a nanofluidic platform. Nucleic Acids Res., 36, e116.
    • (2008) Nucleic Acids Res. , vol.36
    • Qin, J.1    Jones, R.C.2    Ramakrishnan, R.3
  • 21
    • 77649235168 scopus 로고    scopus 로고
    • Taking qPCR to a higher level: Analysis of CNV reveals the power of high throughput qPCR to enhance quantitative resolution
    • Weaver, S., Dube, S., Mir, A., Qin, J., Sun, G., Ramakrishnan, R., Jones, R.C. and Livak, K.J. (2010) Taking qPCR to a higher level: analysis of CNV reveals the power of high throughput qPCR to enhance quantitative resolution. Methods, 50, 271-276.
    • (2010) Methods , vol.50 , pp. 271-276
    • Weaver, S.1    Dube, S.2    Mir, A.3    Qin, J.4    Sun, G.5    Ramakrishnan, R.6    Jones, R.C.7    Livak, K.J.8
  • 22
    • 0023023125 scopus 로고
    • Recovery of nanogram quantities of DNA from plasma and quantitative measurement using labeling by nick translation
    • DOI 10.1016/0003-2697(86)90545-2
    • Fournie, G.J., Gayral-Taminh, M., Bouche, J.P. and Conte, J.J. (1986) Recovery of nanogram quantities of DNA from plasma and quantitative measurement using labeling by nick translation. Anal. Biochem., 158, 250-256. (Pubitemid 17200610)
    • (1986) Analytical Biochemistry , vol.158 , Issue.2 , pp. 250-256
    • Fournie, G.J.1    Gayral-Taminh, M.2    Bouche, J.-P.3    Conte, J.J.4
  • 23
    • 0031815875 scopus 로고    scopus 로고
    • Cell-free DNA in human blood plasma: Length measurements in patients with pancreatic cancer and healthy controls
    • Giacona, M.B., Ruben, G.C., Iczkowski, K.A., Roos, T.B., Porter, D.M. and Sorenson, G.D. (1998) Cell-free DNA in human blood plasma: length measurements in patients with pancreatic cancer and healthy controls. Pancreas, 17, 89-97. (Pubitemid 28293013)
    • (1998) Pancreas , vol.17 , Issue.1 , pp. 89-97
    • Giacona, M.B.1    Ruben, G.C.2    Iczkowski, K.A.3    Roos, T.B.4    Porter, D.M.5    Sorenson, G.D.6
  • 26
    • 51449098381 scopus 로고    scopus 로고
    • Mathematical analysis of copy number variation in a DNA sample using digital PCR on a nanofluidic device
    • Dube, S., Qin, J. and Ramakrishnan, R. (2008) Mathematical analysis of copy number variation in a DNA sample using digital PCR on a nanofluidic device. PLoS One, 3, e2876.
    • (2008) PLoS One , vol.3
    • Dube, S.1    Qin, J.2    Ramakrishnan, R.3
  • 28
    • 67349135284 scopus 로고    scopus 로고
    • Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number
    • Bhat, S., Herrmann, J., Armishaw, P., Corbisier, P. and Emslie, K.R. (2009) Single molecule detection in nanofluidic digital array enables accurate measurement of DNA copy number. Anal. Bioanal. Chem., 394, 457-467.
    • (2009) Anal. Bioanal. Chem. , vol.394 , pp. 457-467
    • Bhat, S.1    Herrmann, J.2    Armishaw, P.3    Corbisier, P.4    Emslie, K.R.5
  • 32
    • 35348999450 scopus 로고    scopus 로고
    • Detection of aneuploidy with digital polymerase chain reaction
    • DOI 10.1021/ac0709394
    • Fan, H.C. and Quake, S.R. (2007) Detection of aneuploidy with digital polymerase chain reaction. Anal. Chem., 79, 7576-7579. (Pubitemid 47606128)
    • (2007) Analytical Chemistry , vol.79 , Issue.19 , pp. 7576-7579
    • Fan, H.C.1    Quake, S.R.2
  • 33
    • 36448955695 scopus 로고    scopus 로고
    • The costs of using unauthenticated over-passaged cell lines: How much more data do we need?
    • Hughes, P., Marshall, D., Reid, Y., Parkes, H. and Gelber, C. (2007) The costs of using unauthenticated, over-passaged cell lines: how much more data do we need? Biotechniques, 43, 575-584.
    • (2007) Biotechniques , vol.43 , pp. 575-584
    • Hughes, P.1    Marshall, D.2    Reid, Y.3    Parkes, H.4    Gelber, C.5
  • 34
    • 78649341741 scopus 로고    scopus 로고
    • A high-throughput method for the detection of homologous gene deletions in hexaploid wheat
    • Fitzgerald, T.L., Kazan, K., Li, Z., Morell, M.K. and Manners, J.M. (2010) A high-throughput method for the detection of homologous gene deletions in hexaploid wheat. BMC Plant. Biol., 10, 264.
    • (2010) BMC Plant. Biol. , vol.10 , pp. 264
    • Fitzgerald, T.L.1    Kazan, K.2    Li, Z.3    Morell, M.K.4    Manners, J.M.5
  • 37
    • 80155134181 scopus 로고    scopus 로고
    • Theoretical design and analysis of multivolume digital assays with wide dynamic range validated experimentally with microfluidic digital PCR
    • Kreutz, J.E., Munson, T., Huynh, T., Shen, F., Du, W. and Ismagilov, R.F. (2011) Theoretical design and analysis of multivolume digital assays with wide dynamic range validated experimentally with microfluidic digital PCR. Anal. Chem., 83, 8158-8168.
    • (2011) Anal. Chem. , vol.83 , pp. 8158-8168
    • Kreutz, J.E.1    Munson, T.2    Huynh, T.3    Shen, F.4    Du, W.5    Ismagilov, R.F.6
  • 38
    • 84855982119 scopus 로고    scopus 로고
    • Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification
    • Pinheiro, L.B., Coleman, V.A., Hindson, C.M., Herrmann, J., Hindson, B.J., Bhat, S. and Emslie, K.R. (2012) Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification. Anal. Chem., 84, 1003-1011.
    • (2012) Anal. Chem. , vol.84 , pp. 1003-1011
    • Pinheiro, L.B.1    Coleman, V.A.2    Hindson, C.M.3    Herrmann, J.4    Hindson, B.J.5    Bhat, S.6    Emslie, K.R.7
  • 39
    • 79951566960 scopus 로고    scopus 로고
    • Applicability of RNA standards for evaluating RT-qPCR assays and platforms
    • Devonshire, A.S., Elaswarapu, R. and Foy, C.A. (2011) Applicability of RNA standards for evaluating RT-qPCR assays and platforms. BMC Genom., 12, 118.
    • (2011) BMC Genom. , vol.12 , pp. 118
    • Devonshire, A.S.1    Elaswarapu, R.2    Foy, C.A.3
  • 40
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res., 29, e45.
    • (2001) Nucleic Acids Res. , vol.29
    • Pfaffl, M.W.1
  • 41
    • 0037306910 scopus 로고    scopus 로고
    • HER-2/neu gene copy number quantified by real-time PCR: Comparison of gene amplification, heterozygosity, and immunohistochemical status in breast cancer tissue
    • DOI 10.1373/49.2.219
    • Konigshoff, M., Wilhelm, J., Bohle, R.M., Pingoud, A. and Hahn, M. (2003) HER-2/neu gene copy number quantified by real-time PCR: comparison of gene amplification, heterozygosity, and immunohistochemical status in breast cancer tissue. Clin. Chem., 49, 219-229. (Pubitemid 36143442)
    • (2003) Clinical Chemistry , vol.49 , Issue.2 , pp. 219-229
    • Konigshoff, M.1    Wilhelm, J.2    Bohle, R.M.3    Pingoud, A.4    Hahn, M.5
  • 42
    • 31144466608 scopus 로고    scopus 로고
    • Stable integration of an empty vector in MCF-7 cells greatly alters the karyotype [2]
    • DOI 10.1016/j.cancergencyto.2005.07.021, PII S0165460805004243
    • Winnard, P. Jr, Glackin, C. and Raman, V. (2006) Stable integration of an empty vector in MCF-7 cells greatly alters the karyotype. Cancer Genet. Cytogenet., 164, 174-176. (Pubitemid 43129768)
    • (2006) Cancer Genetics and Cytogenetics , vol.164 , Issue.2 , pp. 174-176
    • Winnard Jr., P.1    Glackin, C.2    Raman, V.3
  • 43
    • 0029006657 scopus 로고
    • Gene amplification for c-erbB-2, c-myc, epidermal growth factor receptor, int-2, and N-myc measured by quantitative PCR with a multiple competitor template
    • Sestini, R., Orlando, C., Zentilin, L., Lami, D., Gelmini, S., Pinzani, P., Giacca, M. and Pazzagli, M. (1995) Gene amplification for c-erbB-2, c-myc, epidermal growth factor receptor, int-2, and N-myc measured by quantitative PCR with a multiple competitor template. Clin. Chem., 41, 826-832.
    • (1995) Clin. Chem. , vol.41 , pp. 826-832
    • Sestini, R.1    Orlando, C.2    Zentilin, L.3    Lami, D.4    Gelmini, S.5    Pinzani, P.6    Giacca, M.7    Pazzagli, M.8
  • 44
    • 0035043217 scopus 로고    scopus 로고
    • Quantification of HER2/neu gene amplification by competitive PCR using fluorescent melting curve analysis
    • Lyon, E., Millson, A., Lowery, M.C., Woods, R. and Wittwer, C.T. (2001) Quantification of HER2/neu gene amplification by competitive pcr using fluorescent melting curve analysis. Clin. Chem., 47, 844-851. (Pubitemid 32398035)
    • (2001) Clinical Chemistry , vol.47 , Issue.5 , pp. 844-851
    • Lyon, E.1    Millson, A.2    Lowery, M.C.3    Woods, R.4    Wittwer, C.T.5
  • 46
    • 0025287711 scopus 로고
    • Inhibition of c-erbB-2 oncogene expression by estrogens in human breast cancer cells
    • Dati, C., Antoniotti, S., Taverna, D., Perroteau, I. and De Bortoli, M. (1990) Inhibition of c-erbB-2 oncogene expression by estrogens in human breast cancer cells. Oncogene, 5, 1001-1006.
    • (1990) Oncogene , vol.5 , pp. 1001-1006
    • Dati, C.1    Antoniotti, S.2    Taverna, D.3    Perroteau, I.4    De Bortoli, M.5
  • 47
    • 0024516756 scopus 로고
    • Overexpression of the c-erbB-2 protein in human breast tumor cell lines
    • DOI 10.1002/jcb.240390208
    • Hynes, N.E., Gerber, H.A., Saurer, S. and Groner, B. (1989) Overexpression of the c-erbB-2 protein in human breast tumor cell lines. J. Cell Biochem., 39, 167-173. (Pubitemid 19062782)
    • (1989) Journal of Cellular Biochemistry , vol.39 , Issue.2 , pp. 167-173
    • Hynes, N.E.1    Gerber, H.A.2    Saurer, S.3    Groner, B.4
  • 49
    • 0029884715 scopus 로고    scopus 로고
    • Detection and quantitation of HER-2/neu gene amplification in human breast cancer archival material using fluorescence in situ hybridization
    • Pauletti, G., Godolphin, W., Press, M.F. and Slamon, D.J. (1996) Detection and quantitation of HER-2/neu gene amplification in human breast cancer archival material using fluorescence in situ hybridization. Oncogene, 13, 63-72. (Pubitemid 26248546)
    • (1996) Oncogene , vol.13 , Issue.1 , pp. 63-72
    • Pauletti, G.1    Godolphin, W.2    Press, M.F.3    Slamon, D.J.4


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