Recruitment of the ATP-dependent chromatin remodeler dMi-2 to the transcribed region of active heat shock genes

Nucleic Acids Research

Volumn 40, Issue 11, 2012, Pages 4879-4891

  Mathieu, Eve Lyne ^a   Finkernagel, Florian ^a   Murawska, Magdalena ^a   Scharfe, Maren ^b   Jarek, Michael ^b   Brehm, Alexander ^a  

^a PHILIPPS UNIVERSITY MARBURG   (Germany)

^b HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; HEAT SHOCK PROTEIN; PROTEIN DMI 2; UNCLASSIFIED DRUG;

ARTICLE; BASE PAIRING; CHROMATIN ASSEMBLY AND DISASSEMBLY; CHROMATIN STRUCTURE; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; GENE; GENE LOCUS; GENE LOSS; GENETIC TRANSCRIPTION; HSP70 GENE; NONHUMAN; NUCLEOSOME; POLYADENYLATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN INTERACTION; PROTEIN LOCALIZATION; SEQUENCE ANALYSIS; TRANSCRIPTION INITIATION; TRANSCRIPTION TERMINATION;

ADENOSINE TRIPHOSPHATASES; ANIMALS; AUTOANTIGENS; CELLS, CULTURED; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; GENETIC LOCI; HEAT-SHOCK PROTEINS; HEAT-SHOCK RESPONSE; HSP70 HEAT-SHOCK PROTEINS; TRANSCRIPTION, GENETIC;

EID: 84862180206     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks178     Document Type: Article

References (27)

1. Clapier, C.R. and Cairns, B.R. (2009) The biology of chromatin remodeling complexes. Annu. Rev. Biochem., 78, 273-304.
2. Morettini, S., Tribus, M., Zeilner, A., Sebald, J., Campo-Fernandez, B., Scheran, G., Worle, H., Podhraski, V., Fyodorov, D.V. and Lusser, A. (2010) The chromodomains of CHD1 are critical for enzymatic activity but less important for chromatin localization. Nucleic Acids Res., 39, 3103-3115.
3. Murawska, M., Kunert, N., Van Vugt, J., Lä ngst, G., Kremmer, E., Logie, C. and Brehm, A. (2008) dCHD3, a novel ATP-dependent chromatin remodeler associated with sites of active transcription. Mol. Cell. Biol., 28, 2745-2757. (Pubitemid 351542372)
4. Simic, R., Lindstrom, D.L., Tran, H.G., Roinick, K.L., Costa, P.J., Johnson, A.D., Hartzog, G.A. and Arndt, K.M. (2003) Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. EMBO J., 22, 1846-1856. (Pubitemid 36460141)
5. Srinivasan, S., Armstrong, J.A., Deuring, R., Dahlsveen, I.K., McNeill, H. and Tamkun, J.W. (2005) The Drosophila trithorax group protein Kismet facilitates an early step in transcriptional elongation by RNA Polymerase II. Development, 132, 1623-1635. (Pubitemid 40575863)
6. Srinivasan, S., Dorighi, K.M. and Tamkun, J.W. (2008) Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II. PLoS Genet., 4, e1000217.
7. Flanagan, J.F., Mi, L.Z., Chruszcz, M., Cymborowski, M., Clines, K.L., Kim, Y., Minor, W., Rastinejad, F. and Khorasanizadeh, S. (2005) Double chromodomains cooperate to recognize the methylated histone H3 tail. Nature, 438, 1181-1185. (Pubitemid 41831690)
8. Sims, R.J. III, Millhouse, S., Chen, C.F., Lewis, B.A., Erdjument-Bromage, H., Tempst, P., Manley, J.L. and Reinberg, D. (2007) Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing. Mol. Cell., 28, 665-676. (Pubitemid 350137805)
9. Sims, R.J. III, Chen, C.F., Santos-Rosa, H., Kouzarides, T., Patel, S.S. and Reinberg, D. (2005) Human but not yeast CHD1 binds directly and selectively to histone H3 methylated at lysine 4 via its tandem chromodomains. J. Biol. Chem., 280, 41789-41792. (Pubitemid 43023146)
10. Murawska, M., Hassler, M., Renkawitz-Pohl, R., Ladurner, A. and Brehm, A. (2011) Stress-induced PARP activation mediates recruitment of Drosophila Mi-2 to promote heat shock gene expression. PLoS Genet., 7, e1002206.
11. Petesch, S.J. and Lis, J.T. (2008) Rapid, transcription-independent loss of nucleosomes over a large chromatin domain at Hsp70 loci. Cell, 134, 74-84. (Pubitemid 351905736)
12. Tulin, A. and Spradling, A. (2003) Chromatin loosening by poly(ADP)-ribose polymerase (PARP) at Drosophila puff loci. Science, 299, 560-562. (Pubitemid 36135152)
13. Bouazoune, K., Mitterweger, A., Langst, G., Imhof, A., Akhtar, A., Becker, P.B. and Brehm, A. (2002) The dMi-2 chromodomains are DNA binding modules important for ATP-dependent nucleosome mobilization. EMBO J., 21, 2430-2440. (Pubitemid 34546715)
14. Van Steensel, B. and Henikoff, S. (2000) Identification of in vivo DNA targets of chromatin proteins using tethered dam methyltransferase. Nat. Biotechnol., 18, 424-428. (Pubitemid 30217531)
15. Brehm, A., Lä ngst, G., Kehle, J., Clapier, C.R., Imhof, A., Eberharter, A., Mü ller, J. and Becker, P.B. (2000) dMi-2 and ISWI chromatin remodelling factors have distinct nucleosome binding and mobilization properties. EMBO J., 19, 4332-4341. (Pubitemid 30623744)
16. Langmead, B., Trapnell, C., Pop, M. and Salzberg, S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
17. Zhang, Y., Liu, T., Meyer, C.A., Eeckhoute, J., Johnson, D.S., Bernstein, B.E., Nusbaum, C., Myers, R.M., Brown, M., Li, W. et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol., 9, R137.
18. Anders, S. and Huber, W. (2010) Differential expression analysis for sequence count data. Genome Biol., 11, R106.
19. Jamrich, M., Greenleaf, A.L. and Bautz, E.K. (1977) Localization of RNA polymerase in polytene chromosomes of Drosophila melanogaster. Proc. Natl Acad. Sci. USA, 74, 2079-2083. (Pubitemid 8123614)
20. Shopland, L.S. and Lis, J.T. (1996) HSF recruitment and loss at most Drosophila heat shock loci is coordinated and depends on proximal promoter sequences. Chromosoma, 105, 158-171. (Pubitemid 26336516)
21. Andrulis, E.D., Guzmá n, E., Dö ring, P., Werner, J. and Lis, J.T. (2000) High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev., 14, 2635-2649.
22. Lis, J.T., Mason, P., Peng, J., Price, D.H. and Werner, J. (2000) P-TEFb kinase recruitment and function at heat shock loci. Genes Dev., 14, 792-803. (Pubitemid 30214999)
23. Guertin, M.J. and Lis, J.T. (2010) Chromatin landscape dictates HSF binding to target DNA elements. PLoS Genet, 6, e1001114.
24. Teytelman, L., Ozaydin, B., Zill, O., Lefranç ois, P., Snyder, M., Rine, J. and Eisen, M.B. (2009) Impact of chromatin structures on DNA processing for genomic analyses. PLoS One, 4, e6700.
25. Giardina, C. and Lis, J.T. (1993) Polymerase processivity and termination on Drosophila heat shock genes. J. Biol. Chem., 268, 23806-23811. (Pubitemid 23335350)
26. Kotova, E., Lodhi, N., Jarnik, M., Pinnola, A.D., Ji, Y. and Tulin, A.V. (2011) Drosophila histone H2A variant (H2Av) controls poly(ADP-ribose) polymerase 1 (PARP1) activation in chromatin. Proc. Natl Acad. Sci. USA, 108, 6205-6210.
27. Petesch, S.J. and Lis, J.T. (2012) Activator-induced spread of poly(ADP-ribose) polymerase promotes nucleosome loss at Hsp70. Mol. Cell., 45, 64-74.