메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages 871-878

Role of pseudouridine in structural rearrangements of helix 69 during bacterial ribosome assembly

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; MAGNESIUM; NUCLEOTIDE; PSEUDOURIDINE; RNA 16S; RNA 23S;

EID: 84862059499     PISSN: 15548929     EISSN: 15548937     Source Type: Journal    
DOI: 10.1021/cb200497q     Document Type: Article
Times cited : (19)

References (50)
  • 5
    • 33846038387 scopus 로고    scopus 로고
    • Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome
    • DOI 10.1038/nsmb1183, PII NSMB1183
    • Cochella, L., Brunelle, J. L., and Green, R. (2007) Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome Nat. Struct. Mol. Biol. 14, 30-36 (Pubitemid 46067420)
    • (2007) Nature Structural and Molecular Biology , vol.14 , Issue.1 , pp. 30-36
    • Cochella, L.1    Brunelle, J.L.2    Green, R.3
  • 6
    • 0026639881 scopus 로고
    • Unusual resistance of peptidyl transferase to protein extraction procedures
    • Noller, H. F., Hoffarth, V., and Zimniak, L. (1992) Unusual resistance of peptidyl transferase to protein extraction procedures Science 256, 1416-1419
    • (1992) Science , vol.256 , pp. 1416-1419
    • Noller, H.F.1    Hoffarth, V.2    Zimniak, L.3
  • 8
    • 0034637161 scopus 로고    scopus 로고
    • The structural basis of ribosome activity in peptide bond synthesis
    • DOI 10.1126/science.289.5481.920
    • Nissen, P., Hansen, J., Ban, N., Moore, P. B., and Steitz, T. A. (2000) The structural basis of ribosome activity in peptide bond synthesis Science 289, 920-930 (Pubitemid 30659940)
    • (2000) Science , vol.289 , Issue.5481 , pp. 920-930
    • Nissen, P.1    Hansen, J.2    Ban, N.3    Moore, P.B.4    Steitz, T.A.5
  • 9
    • 0024334898 scopus 로고
    • Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites
    • DOI 10.1016/0092-8674(89)90128-1
    • Moazed, D. and Noller, H. F. (1989) Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites Cell 57, 585-597 (Pubitemid 19140644)
    • (1989) Cell , vol.57 , Issue.4 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 10
    • 0142178293 scopus 로고    scopus 로고
    • Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit
    • DOI 10.1261/rna.5120503
    • Schmeing, T. M., Moore, P. B., and Steitz, T. A. (2003) Structures of deacylated tRNA mimics bound to the E site of the large ribosomal subunit RNA 9, 1345-1352 (Pubitemid 37310865)
    • (2003) RNA , vol.9 , Issue.11 , pp. 1345-1352
    • Schmeing, T.M.1    Moore, P.B.2    Steitz, T.A.3
  • 11
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique
    • Bakin, A. and Ofengand, J. (1993) Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique Biochemistry 32, 9754-9762 (Pubitemid 23296822)
    • (1993) Biochemistry , vol.32 , Issue.37 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 12
    • 0036629250 scopus 로고    scopus 로고
    • RRNA modifications and ribosome function
    • DOI 10.1016/S0968-0004(02)02109-6, PII S0968000402021096
    • Decatur, W. A. and Fournier, M. J. (2002) rRNA modifications and ribosome function Trends Biochem. Sci. 27, 344-351 (Pubitemid 34756517)
    • (2002) Trends in Biochemical Sciences , vol.27 , Issue.7 , pp. 344-351
    • Decatur, W.A.1    Fournier, M.J.2
  • 13
    • 35648960799 scopus 로고    scopus 로고
    • Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications
    • DOI 10.1021/cb7001494
    • Chow, C. S., Lamichhane, T. N., and Mahto, S. K. (2007) Expanding the nucleotide repertoire of the ribosome with post-transcriptional modifications ACS Chem. Biol. 2, 610-619 (Pubitemid 350019778)
    • (2007) ACS Chemical Biology , vol.2 , Issue.9 , pp. 610-619
    • Chow, C.S.1    Lamichhane, T.N.2    Mahto, S.K.3
  • 16
    • 0034691576 scopus 로고    scopus 로고
    • A ratchet-like inter-subunit reorganization of the ribosome during translocation
    • DOI 10.1038/35018597
    • Frank, J. and Agrawal, R. K. (2000) A ratchet-like inter-subunit reorganization of the ribosome during translocation Nature 406, 318-322 (Pubitemid 30604411)
    • (2000) Nature , vol.406 , Issue.6793 , pp. 318-322
    • Frank, J.1    Agrawal, R.K.2
  • 18
    • 0029617892 scopus 로고
    • The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection
    • DOI 10.1006/jmbi.1995.0659
    • O'Connor, M. and Dahlberg, A. E. (1995) The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection J. Mol. Biol. 254, 838-847 (Pubitemid 26006855)
    • (1995) Journal of Molecular Biology , vol.254 , Issue.5 , pp. 838-847
    • O'Connor, M.1    Dahlberg, A.E.2
  • 19
    • 58149094345 scopus 로고    scopus 로고
    • Ribosomal intersubunit bridge B2a is involved in factor-dependent translation initiation and translational processivity
    • Kipper, K., Hetényi, C., Sild, S., Remme, J., and Liiv, A. (2009) Ribosomal intersubunit bridge B2a is involved in factor-dependent translation initiation and translational processivity J. Mol. Biol. 385, 405-422
    • (2009) J. Mol. Biol. , vol.385 , pp. 405-422
    • Kipper, K.1    Hetényi, C.2    Sild, S.3    Remme, J.4    Liiv, A.5
  • 20
    • 70350074392 scopus 로고    scopus 로고
    • Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs
    • O'Connor, M. (2009) Helix 69 in 23S rRNA modulates decoding by wild type and suppressor tRNAs Mol. Genet. Genomics 282, 371-380
    • (2009) Mol. Genet. Genomics , vol.282 , pp. 371-380
    • O'Connor, M.1
  • 24
    • 77955431163 scopus 로고    scopus 로고
    • Recognition of the amber UAG stop codon by release factor RF1
    • Korostelev, A., Zhu, J., Asahara, H., and Noller, H. F. (2010) Recognition of the amber UAG stop codon by release factor RF1 EMBO J. 29, 2577-2585
    • (2010) EMBO J. , vol.29 , pp. 2577-2585
    • Korostelev, A.1    Zhu, J.2    Asahara, H.3    Noller, H.F.4
  • 26
    • 79960396249 scopus 로고    scopus 로고
    • Helix 69 is key for uniformity during substrate selection on the ribosome
    • Ortiz-Meoz, R. F. and Green, R. (2011) Helix 69 is key for uniformity during substrate selection on the ribosome J. Biol. Chem. 286, 25604-25610
    • (2011) J. Biol. Chem. , vol.286 , pp. 25604-25610
    • Ortiz-Meoz, R.F.1    Green, R.2
  • 27
    • 77957317859 scopus 로고    scopus 로고
    • Functional elucidation of a key contact between tRNA and the large ribosomal subunit rRNA during decoding
    • Ortiz-Meoz, R. F. and Green, R. (2010) Functional elucidation of a key contact between tRNA and the large ribosomal subunit rRNA during decoding RNA 16, 2002-2013
    • (2010) RNA , vol.16 , pp. 2002-2013
    • Ortiz-Meoz, R.F.1    Green, R.2
  • 28
    • 33748527208 scopus 로고    scopus 로고
    • Deletion of a Conserved, Central Ribosomal Intersubunit RNA Bridge
    • DOI 10.1016/j.molcel.2006.08.011, PII S1097276506005715
    • Ali, I. K., Lancaster, L., Feinberg, J., Joseph, S., and Noller, H. F. (2006) Deletion of a conserved, central ribosomal intersubunit RNA bridge Mol. Cell 23, 865-874 (Pubitemid 44363047)
    • (2006) Molecular Cell , vol.23 , Issue.6 , pp. 865-874
    • Ali, I.K.1    Lancaster, L.2    Feinberg, J.3    Joseph, S.4    Noller, H.F.5
  • 29
    • 79957974560 scopus 로고    scopus 로고
    • Probing conformational states of modified helix 69 in 50S ribosomes
    • Sakakibara, Y. and Chow, C. S. (2011) Probing conformational states of modified helix 69 in 50S ribosomes J. Am. Chem. Soc. 133, 8396-8399
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 8396-8399
    • Sakakibara, Y.1    Chow, C.S.2
  • 32
    • 16244412610 scopus 로고    scopus 로고
    • RNA structure analysis at single nucleotide resolution by Selective 2′-Hydroxyl Acylation and Primer Extension (SHAPE)
    • DOI 10.1021/ja043822v
    • Merino, E. J., Wilkinson, K. A., Coughlan, J. L., and Weeks, K. M. (2005) RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE) J. Am. Chem. Soc. 127, 4223-4231 (Pubitemid 40463047)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.12 , pp. 4223-4231
    • Merino, E.J.1    Wilkinson, K.A.2    Coughlan, J.L.3    Weeks, K.M.4
  • 33
    • 0019051754 scopus 로고
    • Chemical probes for higher-order structure in RNA
    • Peattie, D. A. and Gilbert, W. (1980) Chemical probes for higher-order structure in RNA Proc. Natl. Acad. Sci. U.S.A. 77, 4679-4682
    • (1980) Proc. Natl. Acad. Sci. U.S.A. , vol.77 , pp. 4679-4682
    • Peattie, D.A.1    Gilbert, W.2
  • 34
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes
    • Moazed, D. and Noller, H. F. (1986) Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes Cell 47, 985-994 (Pubitemid 17005071)
    • (1986) Cell , vol.47 , Issue.6 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 35
    • 0033534198 scopus 로고    scopus 로고
    • Nucleotides in 23 S rRNA protected by the association of 30 S and 50 S ribosomal subunits
    • DOI 10.1006/jmbi.1998.2243
    • Merryman, C., Moazed, D., Daubresse, G., and Noller, H. F. (1999) Nucleotides in 23S rRNA protected by the association of 30S and 50S ribosomal subunits J. Mol. Biol. 285, 107-113 (Pubitemid 29034030)
    • (1999) Journal of Molecular Biology , vol.285 , Issue.1 , pp. 107-113
    • Merryman, C.1    Moazed, D.2    Daubresse, G.3    Noller, H.F.4
  • 36
    • 77956340277 scopus 로고    scopus 로고
    • Structural rearrangements of the ribosome at the tRNA proofreading step
    • Jenner, L., Demeshkina, N., Yusupova, G., and Yusupov, M. (2010) Structural rearrangements of the ribosome at the tRNA proofreading step Nat. Struct. Mol. Biol. 17, 1072-1078
    • (2010) Nat. Struct. Mol. Biol. , vol.17 , pp. 1072-1078
    • Jenner, L.1    Demeshkina, N.2    Yusupova, G.3    Yusupov, M.4
  • 37
    • 0035805229 scopus 로고    scopus 로고
    • Recognition of cognate transfer RNA by the 30S ribosomal subunit
    • DOI 10.1126/science.1060612
    • Ogle, J. M., Brodersen, D. E., Clemons, W. M., Jr., Tarry, M. J., Carter, A. P., and Ramakrishnan, V. (2001) Recognition of cognate transfer RNA by the 30S ribosomal subunit Science 292, 897-902 (Pubitemid 32422480)
    • (2001) Science , vol.292 , Issue.5518 , pp. 897-902
    • Ogle, J.M.1    Brodersen, D.E.2    Clemons Jr., W.M.3    Tarry, M.J.4    Carter, A.P.5    Ramakrishnan, V.6
  • 38
    • 36248994061 scopus 로고    scopus 로고
    • Stop Codon Recognition by Release Factors Induces Structural Rearrangement of the Ribosomal Decoding Center that Is Productive for Peptide Release
    • DOI 10.1016/j.molcel.2007.09.015, PII S1097276507006272
    • Youngman, E. M., He, S. L., Nikstad, L. J., and Green, R. (2007) Stop codon recognition by release factors induces structural rearrangement of the ribosomal decoding center that is productive for peptide release Mol. Cell 28, 533-543 (Pubitemid 350137792)
    • (2007) Molecular Cell , vol.28 , Issue.4 , pp. 533-543
    • Youngman, E.M.1    He, S.L.2    Nikstad, L.J.3    Green, R.4
  • 39
    • 0842267211 scopus 로고    scopus 로고
    • Kinetic Determinants of High-Fidelity tRNA Discrimination on the Ribosome
    • DOI 10.1016/S1097-2765(04)00005-X
    • Gromadski, K. B. and Rodnina, M. V. (2004) Kinetic determinants of high-fidelity tRNA discrimination on the ribosome Mol. Cell 13, 191-200 (Pubitemid 38183266)
    • (2004) Molecular Cell , vol.13 , Issue.2 , pp. 191-200
    • Gromadski, K.B.1    Rodnina, M.V.2
  • 40
    • 0019786340 scopus 로고
    • Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs
    • Branlant, C., Krol, A., Machatt, M. A., Pouyet, J., Ebel, J. P., Edwards, K., and Kossel, H. (1981) Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs Nucleic Acids Res. 9, 4303-4324 (Pubitemid 12195771)
    • (1981) Nucleic Acids Research , vol.9 , Issue.17 , pp. 4303-4324
    • Branlant, C.1    Krol, A.2    Ali Machatt, M.3
  • 41
    • 0029883720 scopus 로고    scopus 로고
    • Structural characterization of U*-1915 in domain IV from Escherichia coli 23S ribosomal RNA as 3-methylpseudouridine
    • Kowalak, J. A., Bruenger, E., Hashizume, T., Peltier, J. M., Ofengand, J., and McCloskey, J. A. (1996) Structural characterization of U*-1915 in domain IV from Escherichia coli 23S ribosomal RNA as 3-methylpseudouridine Nucleic Acids Res. 24, 688-693
    • (1996) Nucleic Acids Res. , vol.24 , pp. 688-693
    • Kowalak, J.A.1    Bruenger, E.2    Hashizume, T.3    Peltier, J.M.4    Ofengand, J.5    McCloskey, J.A.6
  • 42
    • 0031787478 scopus 로고    scopus 로고
    • A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli
    • DOI 10.1017/S1355838298981146
    • Raychaudhuri, S., Conrad, J., Hall, B. G., and Ofengand, J. (1998) A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli RNA 4, 1407-1417 (Pubitemid 28503526)
    • (1998) RNA , vol.4 , Issue.11 , pp. 1407-1417
    • Raychaudhuri, S.1    Conrad, J.2    Hall, B.G.3    Ofengand, J.4
  • 43
    • 37649019612 scopus 로고    scopus 로고
    • Pseudouridylation of helix 69 of 23S rRNA is necessary for an effective translation termination
    • Ejby, M., Sørensen, M. A., and Pedersen, S. (2007) Pseudouridylation of helix 69 of 23S rRNA is necessary for an effective translation termination Proc. Natl. Acad. Sci. U.S.A. 104, 19410-19415
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 19410-19415
    • Ejby, M.1    Sørensen, M.A.2    Pedersen, S.3
  • 44
    • 78650105927 scopus 로고    scopus 로고
    • Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica
    • O'Connor, M. and Gregory, S. T. (2011) Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica J. Bacteriol. 193, 154-162
    • (2011) J. Bacteriol. , vol.193 , pp. 154-162
    • O'Connor, M.1    Gregory, S.T.2
  • 45
    • 41649116923 scopus 로고    scopus 로고
    • PH-dependent structural changes of helix 69 from Escherichia coli 23S ribosomal RNA
    • DOI 10.1261/rna.779908
    • Abeysirigunawardena, S. C. and Chow, C. S. (2008) pH-Dependent structural changes of helix 69 from Escherichia coli 23S ribosomal RNA RNA 14, 782-792 (Pubitemid 351480889)
    • (2008) RNA , vol.14 , Issue.4 , pp. 782-792
    • Abeysirigunawardena, S.C.1    Chow, C.S.2
  • 47
    • 34548726200 scopus 로고    scopus 로고
    • Identification of modified residues in RNAs by reverse transcription-based methods
    • Motorin, Y., Muller, S., Behm-Ansmant, I., and Branlant, C. (2007) Identification of modified residues in RNAs by reverse transcription-based methods Methods Enzymol. 425, 21-53
    • (2007) Methods Enzymol. , vol.425 , pp. 21-53
    • Motorin, Y.1    Muller, S.2    Behm-Ansmant, I.3    Branlant, C.4
  • 48
    • 33745205638 scopus 로고    scopus 로고
    • Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity
    • Hirabayashi, N., Sato, N. S., and Suzuki, T. (2006) Conserved loop sequence of helix 69 in Escherichia coli 23 S rRNA is involved in A-site tRNA binding and translational fidelity J. Biol. Chem. 281, 17203-17211
    • (2006) J. Biol. Chem. , vol.281 , pp. 17203-17211
    • Hirabayashi, N.1    Sato, N.S.2    Suzuki, T.3
  • 49
    • 80053155455 scopus 로고    scopus 로고
    • Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
    • Jin, H., Kelley, A. C., and Ramakrishnan, V. (2011) Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3 Proc. Natl. Acad. Sci. U.S.A. 108, 15798-15803
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 15798-15803
    • Jin, H.1    Kelley, A.C.2    Ramakrishnan, V.3
  • 50
    • 0034086680 scopus 로고    scopus 로고
    • Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy
    • Blaha, G., Stelzl, U., Spahn, C. M., Agrawal, R. K., Frank, J., and Nierhaus, K. H. (2000) Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy Methods Enzymol. 317, 292-309 (Pubitemid 30418092)
    • (2000) Methods in Enzymology , vol.317 , pp. 292-309
    • Blaha, G.1    Stelzl, U.2    Spahn, C.M.T.3    Agrawal, R.K.4    Frank, J.5    Nierhaus, K.H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.