-
1
-
-
0002739483
-
Derivations and genotypes of some mutant derivatives of Escherichia coli K-12
-
Neidhardt FC, Curtiss R III, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE, eds. Washington, DC: ASM Press
-
Bachmann BJ. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. In: Neidhardt FC, Curtiss R III, Ingraham JL, Lin ECC, Low KB, Magasanik B, Reznikoff WS, Riley M, Schaechter M, Umbarger HE, eds. Escherichia coli and Salmonella: Cellular and molecular biology, 2nd Ed. Washington, DC: ASM Press, pp. 2460-2488.
-
(1996)
Escherichia Coli and Salmonella: Cellular and Molecular Biology, 2nd Ed.
, pp. 2460-2488
-
-
Bachmann, B.J.1
-
2
-
-
0028088197
-
The single pseudouridine residue in Escherichia coli 16S RNA is located at position 516
-
Bakin A, Kowalak JA, McCloskey JA, Ofengand J. 1994a. The single pseudouridine residue in Escherichia coli 16S RNA is located at position 516. Nucleic Acids Res 22:3681-3684.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 3681-3684
-
-
Bakin, A.1
Kowalak, J.A.2
McCloskey, J.A.3
Ofengand, J.4
-
3
-
-
0028071999
-
Clustering of pseudouridine residues around the peptidyl transferase center of yeast cytoplasmic and mitochondrial ribosomes
-
Bakin A, Lane BG, Ofengand J. 1994b. Clustering of pseudouridine residues around the peptidyl transferase center of yeast cytoplasmic and mitochondrial ribosomes. Biochemistry 33:13475-13483.
-
(1994)
Biochemistry
, vol.33
, pp. 13475-13483
-
-
Bakin, A.1
Lane, B.G.2
Ofengand, J.3
-
4
-
-
0027438034
-
Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNa are all at the peptidyl transferase center: Analysis by the application of a new sequencing technique
-
Bakin A, Ofengand J. 1993. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyl transferase center: Analysis by the application of a new sequencing technique. Biochemistry 32:9754-9762.
-
(1993)
Biochemistry
, vol.32
, pp. 9754-9762
-
-
Bakin, A.1
Ofengand, J.2
-
5
-
-
0032245524
-
Mapping of pseudouridine residues in RNA to nucleotide resolution
-
Martin R, ed. Totowa, NJ: Humana Press, Inc.
-
Bakin A, Ofengand J. 1998. Mapping of pseudouridine residues in RNA to nucleotide resolution. In: Martin R, ed. Methods in molecular biology: Protein synthesis: Methods and protocols. Totowa, NJ: Humana Press, Inc. pp 297-309.
-
(1998)
Methods in Molecular Biology: Protein Synthesis: Methods and Protocols
, pp. 297-309
-
-
Bakin, A.1
Ofengand, J.2
-
6
-
-
0030772852
-
The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of Ψ55 in both mitochondrial and cytoplasmic tRNAs
-
Becker HF, Motorin Y, Planta RJ, Grosjean H. 1997. The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of Ψ55 in both mitochondrial and cytoplasmic tRNAs. Nucleic Acids Res 25:4493-4499.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4493-4499
-
-
Becker, H.F.1
Motorin, Y.2
Planta, R.J.3
Grosjean, H.4
-
7
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner FR, Plunkett G III, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew GF, Gregor J, Davis NW, Kirkpatrick HA, Goeden MA, Rose DJ, Mau B, Shao Y. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett G. III2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
8
-
-
0000661146
-
Pseudouridine, a carbon-carbon linked ribonucleoside in ribonucleic acids: Isolation, structure, and chemical characteristics
-
Cohn WE. 1960. Pseudouridine, a carbon-carbon linked ribonucleoside in ribonucleic acids: Isolation, structure, and chemical characteristics. J Biol Chem 235:1488-1498.
-
(1960)
J Biol Chem
, vol.235
, pp. 1488-1498
-
-
Cohn, W.E.1
-
9
-
-
0032540887
-
The rluC gene of Escherichia coli codes for a pseudouridine synthase which is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23S ribosomal RNA
-
Conrad J, Sun D, Englund N, Ofengand J. 1998. The rluC gene of Escherichia coli codes for a pseudouridine synthase which is solely responsible for synthesis of pseudouridine at positions 955, 2504, and 2580 in 23S ribosomal RNA. J Biol Chem 273:18562-18566.
-
(1998)
J Biol Chem
, vol.273
, pp. 18562-18566
-
-
Conrad, J.1
Sun, D.2
Englund, N.3
Ofengand, J.4
-
10
-
-
0030802234
-
Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: A review
-
Grosjean H, Szweykowska-Kulinska Z, Motorin Y, Fasiolo F, Simos G. 1997. Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: A review. Biochimie 79:293-302.
-
(1997)
Biochimie
, vol.79
, pp. 293-302
-
-
Grosjean, H.1
Szweykowska-Kulinska, Z.2
Motorin, Y.3
Fasiolo, F.4
Simos, G.5
-
12
-
-
0029832294
-
Identification of new RNA modifying enzymes by iterative genome search using known modifying enzymes as probes
-
Gustafsson C, Reid R, Greene PJ, Santi DV. 1996. Identification of new RNA modifying enzymes by iterative genome search using known modifying enzymes as probes. Nucleic Acids Res 24:3756-3762.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3756-3762
-
-
Gustafsson, C.1
Reid, R.2
Greene, P.J.3
Santi, D.V.4
-
13
-
-
0027225783
-
A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures
-
Gutell RR, Gray MW, Schnare MN. 1993. A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures. Nucleic Acids Res 21:3055-3074.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3055-3074
-
-
Gutell, R.R.1
Gray, M.W.2
Schnare, M.N.3
-
14
-
-
0032468235
-
Adaptive mutagenesis at ebgR is regulated by PhoPQ
-
Hall BG. 1998. Adaptive mutagenesis at ebgR is regulated by PhoPQ. J Bacteriol 180:2862-2864.
-
(1998)
J Bacteriol
, vol.180
, pp. 2862-2864
-
-
Hall, B.G.1
-
15
-
-
0031799895
-
X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions
-
Heiss NS, Knight SW, Vulliamy TJ, Klauck SM, Wiemann S, Mason PJ, Poustka A, Dokal I. 1998. X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions. Nature Genet 19:32-38.
-
(1998)
Nature Genet
, vol.19
, pp. 32-38
-
-
Heiss, N.S.1
Knight, S.W.2
Vulliamy, T.J.3
Klauck, S.M.4
Wiemann, S.5
Mason, P.J.6
Poustka, A.7
Dokal, I.8
-
16
-
-
0015243685
-
Reaction of pseudouridine and inosine with N-cyclohexyl-N′-β-(4-methylmorpholinium)ethylcarbodiimide
-
Ho NWY, Gilham PT. 1971. Reaction of pseudouridine and inosine with N-cyclohexyl-N′-β-(4-methylmorpholinium)ethylcarbodiimide. Biochemistry 10:3651-3657.
-
(1971)
Biochemistry
, vol.10
, pp. 3651-3657
-
-
Ho, N.W.Y.1
Gilham, P.T.2
-
17
-
-
0027251266
-
The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrEexpression levels
-
Jensen KJ. 1993. The Escherichia coli K-12 "wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrEexpression levels. J Bacteriol 175:3401-3407.
-
(1993)
J Bacteriol
, vol.175
, pp. 3401-3407
-
-
Jensen, K.J.1
-
18
-
-
0023851755
-
Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I
-
Kammen HO, Marvel CC, Hardy L, Penhoet EE. 1988. Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I. J Biol Chem 263:2255-2263.
-
(1988)
J Biol Chem
, vol.263
, pp. 2255-2263
-
-
Kammen, H.O.1
Marvel, C.C.2
Hardy, L.3
Penhoet, E.E.4
-
19
-
-
0021100156
-
S1 nuclease mapping analysis of ribosomal RNA processing in wild type and processing deficient Escherichia coli
-
King TC, Schlessinger D. 1983. S1 nuclease mapping analysis of ribosomal RNA processing in wild type and processing deficient Escherichia coli. J Biol Chem 258:12034-12042.
-
(1983)
J Biol Chem
, vol.258
, pp. 12034-12042
-
-
King, T.C.1
Schlessinger, D.2
-
20
-
-
0029945504
-
Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
-
Koonin EV. 1996. Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res 24:2411-2415.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 2411-2415
-
-
Koonin, E.V.1
-
21
-
-
0029883720
-
Structural characterization of 3-methylpseudouridine in Domain IV from E. coli 23S ribosomal RNA
-
Kowalak JA, Bruenger E, Hashizume T, Peltier JM, Ofengand J, Mc-Closkey JA. 1996. Structural characterization of 3-methylpseudouridine in Domain IV from E. coli 23S ribosomal RNA. Nucleic Acids Res 24:688-693.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 688-693
-
-
Kowalak, J.A.1
Bruenger, E.2
Hashizume, T.3
Peltier, J.M.4
Ofengand, J.5
Mc-Closkey, J.A.6
-
23
-
-
0031745970
-
Dyskeratosis and ribosomal rebellion
-
Luzzatto L, Karadimitris A. 1998. Dyskeratosis and ribosomal rebellion. Nature Genet 19:6-7.
-
(1998)
Nature Genet
, vol.19
, pp. 6-7
-
-
Luzzatto, L.1
Karadimitris, A.2
-
24
-
-
0025580878
-
The numerous modified nucleotides in eukaryotic ribosomal RNA
-
Maden BEH. 1990. The numerous modified nucleotides in eukaryotic ribosomal RNA. Prog Nucleic Acids Res Mol Biol 39:241-300.
-
(1990)
Prog Nucleic Acids Res Mol Biol
, vol.39
, pp. 241-300
-
-
Maden, B.E.H.1
-
25
-
-
0002425959
-
Posttranscriptional modifications in the U small nuclear RNAs
-
Grosjean H, Benne R, eds. Washington, DC: ASM Press.
-
Massenet S, Mougin A, Branlant S. 1998. Posttranscriptional modifications in the U small nuclear RNAs. In: Grosjean H, Benne R, eds. Modification and editing of RNA. Washington, DC: ASM Press. pp 201-227.
-
(1998)
Modification and Editing of RNA
, pp. 201-227
-
-
Massenet, S.1
Mougin, A.2
Branlant, S.3
-
27
-
-
0026529433
-
Identification of inter-molecular RNA cross-links at the subunit interface of the Escherichia coli ribosome
-
Mitchell P, Osswald M, Brimacombe R. 1992. Identification of inter-molecular RNA cross-links at the subunit interface of the Escherichia coli ribosome. Biochemistry 31:3004-3011.
-
(1992)
Biochemistry
, vol.31
, pp. 3004-3011
-
-
Mitchell, P.1
Osswald, M.2
Brimacombe, R.3
-
28
-
-
0027971869
-
A frequently amplified region in Leishmania contains a gene conserved in prokaryotes and eukaryotes
-
Myler PJ, Venkataraman GM, Lodes MJ, Stuart KD. 1994. A frequently amplified region in Leishmania contains a gene conserved in prokaryotes and eukaryotes. Gene 148:187-193.
-
(1994)
Gene
, vol.148
, pp. 187-193
-
-
Myler, P.J.1
Venkataraman, G.M.2
Lodes, M.J.3
Stuart, K.D.4
-
29
-
-
0029258983
-
Purification, cloning, and properties of the tRNA Ψ55 synthase from Escherichia coli
-
Nurse K, Wrzesinski J, Bakin A, Lane BG, Ofengand J. 1995. Purification, cloning, and properties of the tRNA Ψ55 synthase from Escherichia coli. RNA 1:102-112.
-
(1995)
RNA
, vol.1
, pp. 102-112
-
-
Nurse, K.1
Wrzesinski, J.2
Bakin, A.3
Lane, B.G.4
Ofengand, J.5
-
30
-
-
0029617892
-
The involvement of two distinct regions of 23S ribosomal RNA in tRNA selection
-
O'Connor M, Dahlberg AE 1995. The involvement of two distinct regions of 23S ribosomal RNA in tRNA selection. J Mol Biol 254:838-847.
-
(1995)
J Mol Biol
, vol.254
, pp. 838-847
-
-
O'Connor, M.1
Dahlberg, A.E.2
-
31
-
-
0031581856
-
Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria, and chloroplasts
-
Ofengand J, Bakin A. 1997. Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria, and chloroplasts. J Mol Biol 266:246-268.
-
(1997)
J Mol Biol
, vol.266
, pp. 246-268
-
-
Ofengand, J.1
Bakin, A.2
-
32
-
-
0002387035
-
The pseudouridine residues of rRNA: Number, location, biosynthesis, and function
-
Grosjean H, Benne R, eds. Washington, DC: ASM Press
-
Ofengand J, Fournier M. 1998. The pseudouridine residues of rRNA: Number, location, biosynthesis, and function. In: Grosjean H, Benne R, eds. Modification and editing of RNA. Washington, DC: ASM Press, pp 229-253.
-
(1998)
Modification and Editing of RNA
, pp. 229-253
-
-
Ofengand, J.1
Fournier, M.2
-
33
-
-
0040051584
-
Ribosomal RNA pseudouridine syntheses: Cloning and characterization
-
Ofengand J, Niu L, Sun D, Englund N, Conrad J, Nallaseth F, Lane B. 1997. Ribosomal RNA pseudouridine syntheses: Cloning and characterization. Fed Proc 11:A862.
-
(1997)
Fed Proc
, vol.11
-
-
Ofengand, J.1
Niu, L.2
Sun, D.3
Englund, N.4
Conrad, J.5
Nallaseth, F.6
Lane, B.7
-
34
-
-
0026516467
-
The gene for a tRNa modifying enzyme, m5U54-methyltransferase, is essential for viability in Escherichia coli
-
Persson BC, Gustafsson C, Berg DE, Björk GR. 1992. The gene for a tRNA modifying enzyme, m5U54-methyltransferase, is essential for viability in Escherichia coli. Proc Natl Acad Sci USA 89:3995-3998.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 3995-3998
-
-
Persson, B.C.1
Gustafsson, C.2
De Berg3
Björk, G.R.4
-
35
-
-
0027393081
-
Multiple exoribonucleases are required for the 3′ processing of Escherichia coli tRNA precursors in vivo
-
Reuven NB, Deutscher MP. 1993. Multiple exoribonucleases are required for the 3′ processing of Escherichia coli tRNA precursors in vivo. Fed Proc 7:143-148.
-
(1993)
Fed Proc
, vol.7
, pp. 143-148
-
-
Reuven, N.B.1
Deutscher, M.P.2
-
36
-
-
0031804156
-
Compilation of tRNA sequences and sequences of tRNA genes
-
Sprinzl M, Horn C, Brown M, loudovitch A, Steinberg S. 1998. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 26:148-153.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 148-153
-
-
Sprinzl, M.1
Horn, C.2
Brown, M.3
Loudovitch, A.4
Steinberg, S.5
-
37
-
-
0025838327
-
Absence of hisT-mediated tRNa pseudouridylation results in a uracil requirement that interferes with Escherichia coli K-12 cell division
-
Tsui H-CT, Arps PJ, Connolly DM, Winkler ME. 1991. Absence of hisT-mediated tRNA pseudouridylation results in a uracil requirement that interferes with Escherichia coli K-12 cell division. J Bacteriol 173:7395-7400.
-
(1991)
J Bacteriol
, vol.173
, pp. 7395-7400
-
-
Tsui, H.-C.T.1
Arps, P.J.2
Connolly, D.M.3
Winkler, M.E.4
-
38
-
-
0025314138
-
Cloning, in vitro transcription, and biological activity of Escherichia coli 23S ribosomal RNA
-
Weitzmann C, Cunningham PR, Ofengand J. 1990. Cloning, in vitro transcription, and biological activity of Escherichia coli 23S ribosomal RNA. Nucleic Acids Res 18:3515-3520.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 3515-3520
-
-
Weitzmann, C.1
Cunningham, P.R.2
Ofengand, J.3
-
39
-
-
0029017451
-
Purification, cloning, and properties of the 16S RNA Ψ516 synthase from Escherichia coli
-
Wrzesinski J, Bakin A, Nurse K, Lane B, Ofengand J. 1995a. Purification, cloning, and properties of the 16S RNA Ψ516 synthase from Escherichia coli. Biochemistry 34:8904-8913.
-
(1995)
Biochemistry
, vol.34
, pp. 8904-8913
-
-
Wrzesinski, J.1
Bakin, A.2
Nurse, K.3
Lane, B.4
Ofengand, J.5
|