Does solution viscosity scale the rate of aggregation of folded proteins?

Journal of Physical Chemistry Letters

Volumn 3, Issue 10, 2012, Pages 1258-1263

  Sleutel, Mike ^a   Van Driessche, Alexander E S ^b   Pan, Weichun ^c   Reichel, Erwin K ^e   Maes, Dominique ^a   Vekilov, Peter G ^c,d  

^a VRIJE UNIVERSITEIT BRUSSEL   (Belgium)

^b INSTITUTO ANDALUZ DE CIENCIAS DE LA TIERRA   (Spain)

^c UNIVERSITY OF HOUSTON   (United States)

^d University of Houston   (United States)

^e UNIVERSITY OF LEUVEN   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION BARRIERS; COMPLEX SOLUTION; CRYSTALLIZATION THERMODYNAMICS; FOLDED PROTEINS; GLUCOSE ISOMERASE; MOLECULAR RESOLUTION; PROTEIN AGGREGATION; RHEOMETRY; SOLUTION CRYSTALLIZATION; SOLUTION VISCOSITY; SOLVENT VISCOSITY; STATIC LIGHT SCATTERING; VISCOSITY EFFECTS;

ATOMIC FORCE MICROSCOPY; CRYSTAL GROWTH; GLUCOSE; GLYCEROL; RATE CONSTANTS; THERMODYNAMICS;

PROTEINS;

EID: 84861871918     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz300459n     Document Type: Article

References (47)

1. McPherson, A. Introduction to Macromolecular Crystallography; John Wiley: Hoboken, NJ, 2009.
2. Eaton, W. A.; Hofrichter, J. Sickle Cell Hemoglobin Polymerization. In Advances in Protein Chemistry; Anfinsen, C. B., Edsal, J. T., Richards, F. M., Eisenberg, D. S., Eds.; Academic Press: San Diego, CA, 1990; Vol. 40; p 63.
3. Asherie, N.; Pande, J.; Pande, A.; Zarutskie, J. A.; Lomakin, J.; Lomakin, A.; Ogun, O.; Stern, L. J.; King, J.; Benedek, G. B. Enhanced Crystallization of the Cys18 to Ser Mutant of Bovine Gamma B Crystallin J. Mol. Biol. 2001, 314, 663
4. Leckband, D.; Israelachvili, J. Intermolecular Forces in Biology Q. Rev. Biophys. 2001, 34, 105
5. Ball, P. Water as an Active Constituent in Cell Biology Chem. Rev. 2008, 108, 74
6. Vekilov, P. G.; Feeling-Taylor, A. R.; Yau, S.-T.; Petsev, D. N. Solvent Entropy Contribution to the Free Energy of Protein Crystallization Acta Crystallogr., Sect. D 2002, 58, 1611
7. Landau, L. D.; Lifshitz, E. M. Fluid Mechanics (Course of Theoretical Physics Vol. 6), 2nd ed.; Translated from Russian by J. B. Sykes and W. H. Reid; Butterworth Heinemann: Boston, 1997.
8. Einstein, A. Zur Theorie der Brownschen Bewegung Annalen der Physik 1906, 19, 371
9. Kramers, H. A. Brownian Motion in a Field of Force and the Diffusion Model of Chemical Reactions Physica A 1940, 7, 284
10. Fleming, G. R.; Wolynes, P. G. Chemical Dynamics in Solution Phys. Today 1990, 43, 36
11. Frauenfelder, H.; Wolynes, P. G. Rate Theories and Puzzles of Hemeprotein Kinetics Science 1985, 229, 337
12. Ansari, A.; Jones, C. M.; Henry, E. R.; Hofrichter, J.; Eaton, W. A. The Role of Solvent Viscosity in the Dynamics of Protein Conformational Changes Science 1992, 256, 1796
13. Ballew, R. M.; Sabelko, J.; Gruebele, M. Direct Observation of Fast Protein Folding: The Initial Collapse of Apomyoglobin Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 5759
14. Loveridge, E. J.; Tey, L. H.; Allemann, R. K. Solvent Effects on Catalysis by Escherichia coli Dihydrofolate Reductase J. Am. Chem. Soc. 2010, 132, 1137
15. McPherson, A. Crystallization of Biological Macromolecules;; Cold Spring Harbor Laboratory Press: Cold Spring Harbor, NY, 1999.
16. Vekilov, P. G.; Chernov, A. A. The Physics of Protein Crystallization. In Solid State Physics; Ehrenreich, H.; Spaepen, F., Eds.; Academic Press: New York, 2002; Vol. 57; pp 1.
17. Vekilov, P. G. What Determines the Rate of Growth of Crystals from Solution? Cryst. Growth Des. 2007, 7, 2796
18. Durbin, S. D.; Feher, G. Studies of Crystal Growth Mechanims of Proteins by Electron Microscopy J. Mol. Biol. 1990, 212, 763
19. Malkin, A. J.; Kuznetsov, Y. G.; Land, T. A.; DeYoreo, J. J.; McPherson, A. Mechanisms of Growth of Protein and Virus Crystals Nat. Struct. Biol. 1996, 2, 956
20. Chernov, A. A.; Komatsu, H. Topics in Crystal Growth Kinetics. In Science and Technology of Crystal Growth; van der Eerden, J. P.; Bruinsma, O. S. L., Eds.; Kluwer Academic: Dordrecht, The Netherlands, 1995; p 67.
21. Petsev, D. N.; Chen, K.; Gliko, O.; Vekilov, P. G. Diffusion-Limited Kinetics of the Solution-Solid Phase Transition of Molecular Substances Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 792
22. Srivastava, P.; Shukla, S.; Choubey, S. K.; V.S., G. Isolation, Purification and Characterization of Glucose Isomerase Enzyme form Streptomyces Species Isolated from Parbhani Region J. Enzyme Res. 2010, 1, 1
23. Sleutel, M.; Maes, D.; Wyns, L.; Willaert, R. Kinetic Roughening of Glucose Isomerase Crystals Cryst. Growth Des. 2008, 8, 4409
24. Chernov, A. A. Modern Crystallography III, Crystal Growth; Springer: Berlin, 1984.
25. Crystallization of Nucleaic Acids and Proteins. A Practical Approach; Ducruix, A.; Giege, R., Eds.; IRL Press: Oxford, U.K., 1992.
26. Street, T. O.; Bolen, D. W.; Rose, G. D. A Molecular Mechanism for Osmolyte-Induced Protein Stability Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 13997
27. Sleutel, M.; Willaert, R.; Gillespie, C.; Evrard, C.; Wyns, L.; Maes, D. Kinetics and Thermodynamics of Glucose Isomerase Crystallization Cryst. Growth Des. 2009, 9, 497
28. Mason, T. G.; Weitz, D. A. Optical Measurements of Frequency-Dependent Linear Viscoelastic Moduli of Complex Fluids Phys. Rev. Lett. 1995, 74, 1250
29. Pan, W.; Filobelo, L.; Pham, N. D. Q.; Galkin, O.; Uzunova, V. V.; Vekilov, P. G. Viscoelasticity in Homogeneous Protein Solutions Phys. Rev. Lett. 2009, 102, 058101
30. Chernov, A. A. Protein Crystals and Their Growth J. Struct. Biol. 2003, 142, 3
31. Georgiou, D. K.; Vekilov, P. G. A Fast Response Mechanism for Insulin Storage in Crystals May Involve Kink Generation by Association of 2D Clusters Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 1681
32. Land, T. A.; DeYoreo, J. J.; Lee, J. D. An In-Situ AFM Investigation of Canavalin Crystallization Kinetics Surf. Sci. 1997, 384, 136
33. Sedgwick, H.; Cameron, J. E.; Poon, W. C. K.; Egelhaaf, S. U. Protein Phase Behavior and Crystallization: Effect of Glycerol J. Chem. Phys. 2007, 127, 6
34. Van Driessche, A. E. S.; Gavira, J. A.; Patiño Lopez, L. D.; Otalora, F. Precise Protein Solubility Determination by Laser Confocal Differential Interference Contrast Microscopy J. Cryst. Growth 2009, 311, 3479
35. Farnum, M.; Zukoski, C. Effect of Glycerol on the Interactions and Solubility of Bovine Pancreatic Trypsin Inhibitor Biophys. J. 1999, 76, 2716
36. Onuma, K.; Tsukamoto, K.; Nakadate, S. Application of Real Time Phase Shift Interferometer to the Meaurement of Concentration Field J. Cryst. Growth 1993, 123, 706
37. Pusey, M.; Witherow, W.; Naumann, R. Preliminary Investigation into Solutal Flow about Growing Tetragonal Lysozyme Crystals J. Cryst. Growth 1988, 90, 105
38. Lin, H.; Rosenberger, F.; Alexander, J. I. D.; Nadarajah, A. Convective-Diffusive Transport in Protein Crystal Growth J. Cryst. Growth 1995, 151, 153
39. Berry, P. S.; Rice, S. A.; Ross, J. Physical Chemistry, 2nd ed.; Oxford University Press: New York, 2000.
40. Katz, A. K.; Li, X.; Carrell, H. L.; Hanson, B. L.; Langan, P.; Coates, L.; Schoenborn, B. P.; Glusker, J. P.; Bunick, G. J. Locating Active-Site Hydrogen Atoms in d -Xylose Isomerase: Time-of-Flight Neutron Diffraction Proc. Natl. Acad. Sci. 2006, 103, 8342
41. Tarini, M.; Cignoni, P.; Montani, C. Ambient Occlusion and Edge Cueing to Enhance Real Time Molecular Visualization IEEE Trans. Visualization Comput. Graphics 2006, 12, 1237
42. Pettersen, E.; Goddard, T.; Huang, C.; Couch, G.; Greenblatt, D.; Meng, E.; Ferrin, T. UCSF Chimera-A Visualization System for Exploratory Research and Analysis J. Comput. Chem. 2004, 25, 1605
43. von Smoluchowski, M. Versuch einer Matematischen Theorie der Koagulationskinetik Kollpider Losungen Z. Phys. Chem. 1918, 92, 129
44. Yau, S.-T.; Petsev, D. N.; Thomas, B. R.; Vekilov, P. G. Molecular-Level Thermodynamic and Kinetic Parameters for the Self-Assembly of Apoferritin Molecules into Crystals J. Mol. Biol. 2000, 303, 667
45. Yau, S.-T.; Thomas, B. R.; Vekilov, P. G. Molecular Mechanisms of Crystallization and Defect Formation Phys. Rev. Lett. 2000, 85, 353
46. Vekilov, P. G.; Galkin, O.; Pettitt, B. M.; Choudhury, N.; Nagel, R. L. Determination of the Transition-State Entropy for Aggregation Suggests How the Growth of Sickle Cell Hemoglobin Polymers Can Be Slowed J. Mol. Biol. 2008, 377, 882
47. Yamada, S.; Wirtz, D.; Kuo, S. C. Mechanics of Living Cells Measured by Laser Tracking Microrheology Biophys. J. 2000, 78, 1736