-
1
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
DOI 10.1093/bioinformatics/bti263
-
Abascal F, Zardoya R, Posada D 2005. ProtTest:selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105 (Pubitemid 40668057)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
0027231255
-
Ionic interactions in the coiled-coil domain of laminin determine the specificity of chain assembly
-
DOI 10.1006/jmbi.1993.1284
-
Beck K, Dixon TW, Engel J, Parry DA 1993. Ionic interactions in the coiled-coil domain of laminin determine the specificity of chain assembly. J Mol Biol. 231:311-323 (Pubitemid 23188255)
-
(1993)
Journal of Molecular Biology
, vol.231
, Issue.2
, pp. 311-323
-
-
Beck, K.1
Dixon, T.W.2
Engel, J.3
Parry, D.A.D.4
-
4
-
-
0031452010
-
Self-assembly of laminin isoforms
-
DOI 10.1074/jbc.272.50.31525
-
Cheng YS, Champliaud MF, Burgeson RE, Marinkovich MP, Yurchenco PD 1997. Self-assembly of laminin isoforms. J Biol Chem. 272:31525-31532 (Pubitemid 28013294)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.50
, pp. 31525-31532
-
-
Cheng, Y.-S.1
Champliaud, M.-F.2
Burgeson, R.E.3
Marinkovich, M.P.4
Yurchenco, P.D.5
-
5
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
DOI 10.1038/nprot.2007.131, PII NPROT.2007.131
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H 2007. Locating proteins in the cell using TargetP, SignalP, and related tools. Nat Protoc. 2:953-971 (Pubitemid 46745592)
-
(2007)
Nature Protocols
, vol.2
, Issue.4
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
6
-
-
57649133947
-
Demosponge and sea anemone fibrillar collagen diversity reveals the early emergence of A/C clades and the maintenance of the modular structure of type V/XI collagens from sponge to human
-
Exposito JY, Larroux C, Cluzel C, Valcourt U, Lethias C, Degnan BM 2008. Demosponge and sea anemone fibrillar collagen diversity reveals the early emergence of A/C clades and the maintenance of the modular structure of type V/XI collagens from sponge to human. J Biol Chem. 283:28226-28235
-
(2008)
J Biol Chem
, vol.283
, pp. 28226-28235
-
-
Exposito, J.Y.1
Larroux, C.2
Cluzel, C.3
Valcourt, U.4
Lethias, C.5
Degnan, B.M.6
-
7
-
-
78049457828
-
Origin of animal epithelia:insights from the sponge genome
-
Fahey B, Degnan BM 2010. Origin of animal epithelia:insights from the sponge genome. Evol Dev. 12:601-617
-
(2010)
Evol Dev
, vol.12
, pp. 601-617
-
-
Fahey, B.1
Degnan, B.M.2
-
9
-
-
38549146894
-
The Pfam protein families database
-
DOI 10.1093/nar/gkm960
-
Finn RD, Tate J, Mistry J, et al. (11 co-authors). 2008. The Pfam protein families database. Nucleic Acids Res. 36:D281-D288 (Pubitemid 351149737)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.SUPPL. 1
-
-
Finn, R.D.1
Tate, J.2
Mistry, J.3
Coggill, P.C.4
Sammut, S.J.5
Hotz, H.-R.6
Ceric, G.7
Forslund, K.8
Eddy, S.R.9
Sonnhammer, E.L.L.10
Bateman, A.11
-
10
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
DOI 10.1080/10635150390235520
-
Guindon S, Gascuel O 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol. 52:696-704 (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
12
-
-
0142188562
-
Septate and paranodal junctions: Kissing cousins
-
DOI 10.1016/j.tcb.2003.09.004
-
Hortsch M, Margolis B. 2003. Septate and paranodal junctions:kissing cousins. Trends Cell Biol. 13:557-561. (Pubitemid 37311395)
-
(2003)
Trends in Cell Biology
, vol.13
, Issue.11
, pp. 557-561
-
-
Hortsch, M.1
Margolis, B.2
-
13
-
-
33751347857
-
The Scribble and Par complexes in polarity and migration: Friends or foes?
-
DOI 10.1016/j.tcb.2006.10.005, PII S0962892406002753
-
Humbert PO, Dow LE, Russell SM 2006. The Scribble and Par complexes in polarity and migration:friends or foes?. Trends Cell Biol. 16:622-630 (Pubitemid 44809887)
-
(2006)
Trends in Cell Biology
, vol.16
, Issue.12
, pp. 622-630
-
-
Humbert, P.O.1
Dow, L.E.2
Russell, S.M.3
-
14
-
-
58149203231
-
InterPro: The integrative protein signature database
-
Hunter S, Apweiler R, Attwood TK, et al (38 co-authors). 2009. InterPro:the integrative protein signature database. Nucleic Acids Res. 37:D211-D215
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
-
15
-
-
0034635465
-
Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes
-
Hutter H, Vogel BE, Plenefisch JD, et al (11 co-authors). 2000. Conservation and novelty in the evolution of cell adhesion and extracellular matrix genes. Science 287:989-994
-
(2000)
Science
, vol.287
, pp. 989-994
-
-
Hutter, H.1
Vogel, B.E.2
Plenefisch, J.D.3
-
17
-
-
39149110563
-
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
-
DOI 10.1038/nature06617, PII NATURE06617
-
King N, Westbrook MJ, Young SL, et al (36 co-authors). 2008. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 451:783-788 (Pubitemid 351253174)
-
(2008)
Nature
, vol.451
, Issue.7180
, pp. 783-788
-
-
King, N.1
Westbrook, M.J.2
Young, S.L.3
Kuo, A.4
Abedin, M.5
Chapman, J.6
Fairclough, S.7
Hellsten, U.8
Isogai, Y.9
Letunic, I.10
Marr, M.11
Pincus, D.12
Putnam, N.13
Rokas, A.14
Wright, K.J.15
Zuzow, R.16
Dirks, W.17
Good, M.18
Goodstein, D.19
Lemons, D.20
Li, W.21
Lyons, J.B.22
Morris, A.23
Nichols, S.24
Richter, D.J.25
Salamov, A.26
Bork, P.27
Lim, W.A.28
Manning, G.29
Miller, W.T.30
McGinnis, W.31
Shapiro, H.32
Tjian, R.33
Grigoriev, I.V.34
Rokhsar, D.35
more..
-
18
-
-
0037032804
-
Composition and formation of intercellular junctions in epithelial cells
-
DOI 10.1126/science.1072161
-
Knust E, Bossinger O 2002. Composition and formation of intercellular junctions in epithelial cells. Science 298:1955-1959 (Pubitemid 35425244)
-
(2002)
Science
, vol.298
, Issue.5600
, pp. 1955-1959
-
-
Knust, E.1
Bossinger, O.2
-
19
-
-
0034676061
-
A novel member of the netrin family, b-netrin, shares homology with the b chain of laminin:identification, expression, and functional characterization
-
Koch M, Murrell JR, Hunter DD, Olson PF, Jin W, Keene DR, Brunken WJ, Burgeson RE 2000. A novel member of the netrin family, b-netrin, shares homology with the b chain of laminin:identification, expression, and functional characterization. J Cell Biol. 151:221-234
-
(2000)
J Cell Biol
, vol.151
, pp. 221-234
-
-
Koch, M.1
Murrell, J.R.2
Hunter, D.D.3
Olson, P.F.4
Jin, W.5
Keene, D.R.6
Brunken, W.J.7
Burgeson, R.E.8
-
22
-
-
0036360602
-
Embryogenesis and metamorphosis in a haplosclerid demosponge: Gastrulation and transdifferentiation of larval ciliated cells to choanocytes
-
Leys SP, Degnan BM 2002. Embryogenesis and metamorphosis in a haplosclerid demosponge:gastrulation and transdifferentiation of larval ciliated cells to choanocytes. Invertebr Biol. 121:171-189 (Pubitemid 34978883)
-
(2002)
Invertebrate Biology
, vol.121
, Issue.3
, pp. 171-189
-
-
Leys, S.P.1
Degnan, B.M.2
-
24
-
-
0038330238
-
The role of laminin in embryonic cell polarization and tissue organization
-
DOI 10.1016/S1534-5807(03)00128-X, PII S153458070300128X
-
Li SH, Edgar D, Fassler R, Wadsworth W, Yurchenco PD 2003. The role of laminin in embryonic cell polarization and tissue organization. Dev CE.L.L. 4:613-624 (Pubitemid 36564893)
-
(2003)
Developmental Cell
, vol.4
, Issue.5
, pp. 613-624
-
-
Li, S.1
Edgar, D.2
Fassler, R.3
Wadsworth, W.4
Yurchenco, P.D.5
-
25
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas A, Vandyke M, Stock J 1991. Predicting coiled coils from protein sequences. Science 252:1162-1164 (Pubitemid 21917026)
-
(1991)
Science
, vol.252
, Issue.5009
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
27
-
-
79955766198
-
Complex networks govern coiled coil oligomerization-predicting and profiling by means of a machine learning approach
-
doi:10.1074/ mcp.M1110.004994
-
Mahrenholz CC, Abfalter IG, Bodenhofer U, Volkmer R, Hochreiter S. 2011. Complex networks govern coiled coil oligomerization-predicting and profiling by means of a machine learning approach. Mol Cell Proteomics. 10:doi:10.1074/ mcp.M1110.004994
-
(2011)
Mol Cell Proteomics.
, vol.10
-
-
Mahrenholz, C.C.1
Abfalter, I.G.2
Bodenhofer, U.3
Volkmer, R.4
Hochreiter, S.5
-
28
-
-
4344575287
-
Coiled coil domains: Stability, specificity, and biological implications
-
DOI 10.1002/cbic.200300781
-
Mason JM, Arndt KM 2004. Coiled coil domains:stability, specificity, and biological implications. Chembiochem 5:170-176 (Pubitemid 39256232)
-
(2004)
ChemBioChem
, vol.5
, Issue.2
, pp. 170-176
-
-
Mason, J.M.1
Arndt, K.M.2
-
29
-
-
32144456009
-
Paircoil2: Improved prediction of coiled coils from sequence
-
DOI 10.1093/bioinformatics/bti797
-
McDonnell AV, Jiang T, Keating AE, Berger B 2006. Paircoil2:improved prediction of coiled coils from sequence. Bioinformatics 22:356-358 (Pubitemid 43205384)
-
(2006)
Bioinformatics
, vol.22
, Issue.3
, pp. 356-358
-
-
McDonnell, A.V.1
Jiang, T.2
Keating, A.E.3
Berger, B.4
-
30
-
-
42949086409
-
Laminins and their roles in mammals
-
DOI 10.1002/jemt.20563
-
Miner JH 2008. Laminins and their roles in mammals. Microsc Res Tech. 71:349-356 (Pubitemid 351620857)
-
(2008)
Microscopy Research and Technique
, vol.71
, Issue.5
, pp. 349-356
-
-
Miner, J.H.1
-
32
-
-
14344250090
-
PAR proteins and the establishment of cell polarity during C. elegans development
-
DOI 10.1002/bies.20175
-
Nance J 2005. PAR proteins and the establishment of cell polarity during C. elegans development. Bioessays 27:126-135 (Pubitemid 40292384)
-
(2005)
BioEssays
, vol.27
, Issue.2
, pp. 126-135
-
-
Nance, J.1
-
33
-
-
65249099546
-
Phylogenomics revives traditional views on deep animal relationships
-
Philippe H, Derelle R, Lopez P, et al (20 co-authors). 2009. Phylogenomics revives traditional views on deep animal relationships. Curr Biol. 19:706-712
-
(2009)
Curr Biol
, vol.19
, pp. 706-712
-
-
Philippe, H.1
Derelle, R.2
Lopez, P.3
-
34
-
-
77955497041
-
Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships
-
Pick KS, Philippe H, Schreiber F, et al (11 co-authors). 2010. Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships. Mol Biol Evol. 27:1983-1987
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1983-1987
-
-
Pick, K.S.1
Philippe, H.2
Schreiber, F.3
-
35
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
DOI 10.1093/nar/gkl842
-
Pruitt KD, Tatusova T, Maglott DR 2007. NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 35:D61-D65 (Pubitemid 46056171)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
36
-
-
34447300950
-
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
-
DOI 10.1126/science.1139158
-
Putnam NH, Srivastava M, Hellsten U, et al (19 co-authors). 2007. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317:86-94 (Pubitemid 47056460)
-
(2007)
Science
, vol.317
, Issue.5834
, pp. 86-94
-
-
Putnam, N.H.1
Srivastava, M.2
Hellsten, U.3
Dirks, B.4
Chapman, J.5
Salamov, A.6
Terry, A.7
Shapiro, H.8
Lindquist, E.9
Kapitonov, V.V.10
Jurka, J.11
Genikhovich, G.12
Grigoriev, I.V.13
Lucas, S.M.14
Steele, R.E.15
Finnerty, J.R.16
Technau, U.17
Martindale, M.Q.18
Rokhsar, D.S.19
-
37
-
-
23144458473
-
InterProScan:protein domains identifier
-
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R 2005. InterProScan:protein domains identifier. Nucleic Acids Res. 33:W116-W120
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
Mulder, N.5
Apweiler, R.6
Lopez, R.7
-
38
-
-
0028144952
-
Cloning and biological function of laminin in Hydra vulgaris
-
DOI 10.1006/dbio.1994.1201
-
Sarras MPJ, Yan L, Grens A, Zhang X, Agbas A, Huff JK, St John PL, Abrahamson DR 1994. Cloning and biological function of laminin in Hydra vulgaris. Dev Biol. 164:312-324 (Pubitemid 24234356)
-
(1994)
Developmental Biology
, vol.164
, Issue.1
, pp. 312-324
-
-
Sarras Jr., M.P.1
Yan, L.2
Grens, A.3
Zhang, X.4
Agbas, A.5
Huff, J.K.6
St John, P.L.7
Abrahamson, D.R.8
-
39
-
-
0038303289
-
A genomewide survey of developmentally relevant genes in Ciona intestinalis. X. Genes for cell junctions and extracellular matrix
-
DOI 10.1007/s00427-003-0320-1
-
Sasakura Y, Shoguchi E, Takatori N, Wada S, Meinertzhagen IA, Satou Y, Satoh N 2003. A genomewide survey of developmentally relevant genes in Ciona intestinalis-X. Genes for cell junctions and extracellular matrix. Dev Genes Evol. 213:303-313 (Pubitemid 36833699)
-
(2003)
Development Genes and Evolution
, vol.213
, Issue.5-6
, pp. 303-313
-
-
Sasakura, Y.1
Shoguchi, E.2
Takatori, N.3
Wada, S.4
Meinertzhagen, I.A.5
Satou, Y.6
Satoh, N.7
-
40
-
-
75549087533
-
PROSITE, a protein domain database for functional characterization and annotation
-
Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N 2010. PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res. 38:D161-D166
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Sigrist, C.J.1
Cerutti, L.2
De Castro, E.3
Langendijk-Genevaux, P.S.4
Bulliard, V.5
Bairoch, A.6
Hulo, N.7
-
41
-
-
70349932469
-
Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa
-
Sperling EA, Peterson KJ, Pisani D 2009. Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa. Mol Biol Evol. 26:2261-2274
-
(2009)
Mol Biol Evol
, vol.26
, pp. 2261-2274
-
-
Sperling, E.A.1
Peterson, K.J.2
Pisani, D.3
-
42
-
-
50049092481
-
The Trichoplax genome and the nature of placozoans
-
Srivastava M, Begovic E, Chapman J, et al (21 co-authors). 2008. The Trichoplax genome and the nature of placozoans. Nature 454:955-960
-
(2008)
Nature
, vol.454
, pp. 955-960
-
-
Srivastava, M.1
Begovic, E.2
Chapman, J.3
-
43
-
-
77955490196
-
The Amphimedon queenslandica genome and the evolution of animal complexity
-
Srivastava M, Simakov O, Chapman J, et al (33 co-authors). 2010. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466:720-727
-
(2010)
Nature
, vol.466
, pp. 720-727
-
-
Srivastava, M.1
Simakov, O.2
Chapman, J.3
-
44
-
-
0030087944
-
Supramolecular assembly of basement membranes
-
Timpl R, Brown JC 1996. Supramolecular assembly of basement membranes. Bioessays 18:123-132
-
(1996)
Bioessays
, vol.18
, pp. 123-132
-
-
Timpl, R.1
Brown, J.C.2
-
45
-
-
0043204760
-
Epithelium - The primary building block for metazoan complexity
-
Tyler S 2003. Epithelium-the primary building block for metazoan complexity. Integr Comp Biol. 43:55-63 (Pubitemid 36953167)
-
(2003)
Integrative and Comparative Biology
, vol.43
, Issue.1
, pp. 55-63
-
-
Tyler, S.1
-
46
-
-
36249022091
-
Bridging structure with function: Structural, regulatory, and developmental role of laminins
-
DOI 10.1016/j.biocel.2007.07.015, PII S1357272507002476
-
Tzu J, Marinkovich MP 2008. Bridging structure with function:structural, regulatory, and developmental role of laminins. Int J Biochem Cell Biol. 40:199-214 (Pubitemid 350137873)
-
(2008)
International Journal of Biochemistry and Cell Biology
, vol.40
, Issue.2
, pp. 199-214
-
-
Tzu, J.1
Marinkovich, M.P.2
-
47
-
-
33751550350
-
The echinoderm adhesome
-
DOI 10.1016/j.ydbio.2006.07.044, PII S001216060601058X, Sea Urchin Genome: Implications and Insights
-
Whittaker CA, Bergeron K-F, Whittle J, Brandhorst BP, Burke RD, Hynes RO 2006. The echinoderm adhesome. Dev Biol. 300:252-266 (Pubitemid 44826987)
-
(2006)
Developmental Biology
, vol.300
, Issue.1
, pp. 252-266
-
-
Whittaker, C.A.1
Bergeron, K.-F.2
Whittle, J.3
Brandhorst, B.P.4
Burke, R.D.5
Hynes, R.O.6
-
48
-
-
0035002015
-
Computational inference of homologous gene structures in the human genome
-
DOI 10.1101/gr.175701
-
Yeh RF, Lim LP, Burge CB 2001. Computational inference of homologous gene structures in the human genome. Genome Res. 11:803-816 (Pubitemid 32447865)
-
(2001)
Genome Research
, vol.11
, Issue.5
, pp. 803-816
-
-
Yeh, R.-F.1
Lim, L.P.2
Burge, C.B.3
-
49
-
-
0036934521
-
Structure and function of an early divergent form of laminin in hydra: A structurally conserved ECM component that is essential for epithelial morphogenesis
-
DOI 10.1007/s00427-002-0225-4
-
Zhang X, Fei K, Agbas A, Yan L, Zhang J, O'Reilly B, Deutzmann R, Sarras MP Jr. 2002. Structure and function of an early divergent form of laminin in hydra: A structurally conserved ECM component that is essential for epithelial morphogenesis. Dev Genes Evol. 212:159-172. (Pubitemid 36075541)
-
(2002)
Development Genes and Evolution
, vol.212
, Issue.4
, pp. 159-172
-
-
Zhang, X.1
Fei, K.2
Agbas, A.3
Yan, L.4
Zhang, J.5
O'Reilly, B.6
Deutzmann, R.7
Sarras Jr., M.P.8
|